Protein–RNA interactions for Protein: P28068

HLA-DMB, HLA class II histocompatibility antigen, DM beta chain, humanhuman

Predictions only

Length 263 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HLA-DMBP28068 SRC-202ENST00000373558 4304 ntTSL 5 BASIC11.46□□□□□ -0.57
HLA-DMBP28068 PCDHA5-201ENST00000529619 4157 ntTSL 1 (best) BASIC11.46□□□□□ -0.57
HLA-DMBP28068 POLR2E-211ENST00000612655 1749 ntAPPRIS P1 TSL 3 BASIC11.46□□□□□ -0.57
HLA-DMBP28068 CKM-201ENST00000221476 1657 ntAPPRIS P1 TSL 1 (best) BASIC11.46□□□□□ -0.57
HLA-DMBP28068 AL158070.2-201ENST00000623713 1621 ntBASIC11.46□□□□□ -0.57
HLA-DMBP28068 PTBP1-221ENST00000635647 3691 ntTSL 5 BASIC11.46□□□□□ -0.57
HLA-DMBP28068 DMTN-201ENST00000265800 2554 ntTSL 5 BASIC11.46□□□□□ -0.57
HLA-DMBP28068 DMTN-207ENST00000517305 2551 ntTSL 5 BASIC11.46□□□□□ -0.57
HLA-DMBP28068 GRK6-211ENST00000528793 2571 ntTSL 1 (best) BASIC11.46□□□□□ -0.57
HLA-DMBP28068 MPI-203ENST00000535694 1523 ntTSL 2 BASIC11.46□□□□□ -0.57
HLA-DMBP28068 NFATC1-218ENST00000592223 2531 ntAPPRIS ALT2 TSL 1 (best) BASIC11.46□□□□□ -0.57
HLA-DMBP28068 LAT-202ENST00000360872 1459 ntAPPRIS P3 TSL 2 BASIC11.46□□□□□ -0.57
HLA-DMBP28068 SNPH-203ENST00000614659 5354 ntAPPRIS ALT2 TSL 1 (best) BASIC11.46□□□□□ -0.57
HLA-DMBP28068 TMPRSS3-204ENST00000433957 2403 ntAPPRIS ALT1 TSL 1 (best) BASIC11.46□□□□□ -0.57
HLA-DMBP28068 PMM2-201ENST00000268261 2313 ntAPPRIS P1 TSL 1 (best) BASIC11.46□□□□□ -0.57
HLA-DMBP28068 NYNRIN-201ENST00000382554 7857 ntAPPRIS P1 TSL 5 BASIC11.46□□□□□ -0.57
HLA-DMBP28068 CLN8-205ENST00000520991 1305 ntTSL 5 BASIC11.46□□□□□ -0.57
HLA-DMBP28068 MTMR6-201ENST00000381801 5659 ntAPPRIS P1 TSL 1 (best) BASIC11.46□□□□□ -0.57
HLA-DMBP28068 IQCE-201ENST00000325979 2179 ntAPPRIS ALT2 TSL 5 BASIC11.46□□□□□ -0.57
HLA-DMBP28068 CDKL3-206ENST00000521118 2160 ntAPPRIS ALT2 TSL 5 BASIC11.46□□□□□ -0.57
HLA-DMBP28068 ERCC1-201ENST00000013807 1278 ntTSL 1 (best) BASIC11.46□□□□□ -0.57
HLA-DMBP28068 CCDC182-201ENST00000299415 832 ntAPPRIS P1 BASIC11.46□□□□□ -0.57
HLA-DMBP28068 CIDEA-201ENST00000320477 828 ntAPPRIS P1 TSL 1 (best) BASIC11.46□□□□□ -0.57
HLA-DMBP28068 PIN1P1-201ENST00000412108 996 ntBASIC11.46□□□□□ -0.57
HLA-DMBP28068 LINC01067-201ENST00000432575 664 ntTSL 3 BASIC11.46□□□□□ -0.57
HLA-DMBP28068 RASL12-203ENST00000434605 982 ntTSL 2 BASIC11.46□□□□□ -0.57
HLA-DMBP28068 SHBG-204ENST00000441599 973 ntAPPRIS ALT2 TSL 1 (best) BASIC11.46□□□□□ -0.57
HLA-DMBP28068 BMP7-AS1-201ENST00000445956 436 ntTSL 2 BASIC11.46□□□□□ -0.57
HLA-DMBP28068 AC147067.1-201ENST00000466692 579 ntTSL 2 BASIC11.46□□□□□ -0.57
HLA-DMBP28068 ARHGEF26-AS1-201ENST00000467912 628 ntTSL 3 BASIC11.46□□□□□ -0.57
HLA-DMBP28068 S100A6-205ENST00000496817 673 ntAPPRIS P1 TSL 2 BASIC11.46□□□□□ -0.57
HLA-DMBP28068 GAPDHP40-201ENST00000505218 1006 ntBASIC11.46□□□□□ -0.57
HLA-DMBP28068 AC123777.1-201ENST00000534827 1247 ntTSL 3 BASIC11.46□□□□□ -0.57
HLA-DMBP28068 PTHLH-206ENST00000538310 854 ntTSL 5 BASIC11.46□□□□□ -0.57
HLA-DMBP28068 AC104794.3-201ENST00000566840 1248 ntBASIC11.46□□□□□ -0.57
HLA-DMBP28068 ZNF226-211ENST00000588742 447 ntTSL 1 (best) BASIC11.46□□□□□ -0.57
HLA-DMBP28068 ZNF324B-203ENST00000594214 564 ntTSL 2 BASIC11.46□□□□□ -0.57
HLA-DMBP28068 AC107373.2-201ENST00000607735 490 ntBASIC11.46□□□□□ -0.57
HLA-DMBP28068 AL391069.4-201ENST00000609583 481 ntBASIC11.46□□□□□ -0.57
HLA-DMBP28068 BARD1-209ENST00000613192 703 ntTSL 1 (best) BASIC11.46□□□□□ -0.57
HLA-DMBP28068 AC092506.1-204ENST00000634888 1066 ntTSL 5 BASIC11.46□□□□□ -0.57
HLA-DMBP28068 AC105233.6-201ENST00000642093 218 ntBASIC11.46□□□□□ -0.57
HLA-DMBP28068 OS9-204ENST00000389146 2091 ntTSL 2 BASIC11.46□□□□□ -0.57
HLA-DMBP28068 GRAMD4-202ENST00000406902 4484 ntAPPRIS P1 TSL 1 (best) BASIC11.46□□□□□ -0.57
HLA-DMBP28068 MX1-218ENST00000619682 1980 ntTSL 5 BASIC11.46□□□□□ -0.58
HLA-DMBP28068 PPP1R26P4-201ENST00000619065 3527 ntBASIC11.46□□□□□ -0.58
HLA-DMBP28068 HSPA7-201ENST00000445535 1927 ntBASIC11.46□□□□□ -0.58
HLA-DMBP28068 KCP-206ENST00000613019 4853 ntAPPRIS P5 TSL 5 BASIC11.46□□□□□ -0.58
HLA-DMBP28068 UBAP1-202ENST00000359544 2535 ntAPPRIS P1 TSL 1 (best) BASIC11.46□□□□□ -0.58
HLA-DMBP28068 PBXIP1-202ENST00000368463 3212 ntAPPRIS P3 TSL 1 (best) BASIC11.46□□□□□ -0.58
HLA-DMBP28068 TPM3-205ENST00000328159 1771 ntTSL 2 BASIC11.46□□□□□ -0.58
HLA-DMBP28068 ADCYAP1R1-204ENST00000409489 1761 ntTSL 5 BASIC11.46□□□□□ -0.58
HLA-DMBP28068 ATXN7-201ENST00000295900 7224 ntAPPRIS P3 TSL 1 (best) BASIC11.46□□□□□ -0.58
HLA-DMBP28068 SMAD2-202ENST00000356825 10445 ntTSL 1 (best) BASIC11.46□□□□□ -0.58
HLA-DMBP28068 OTUD6A-201ENST00000338352 1689 ntAPPRIS P1 BASIC11.46□□□□□ -0.58
HLA-DMBP28068 NEK10-206ENST00000429845 4250 ntAPPRIS P1 TSL 5 BASIC11.46□□□□□ -0.58
HLA-DMBP28068 WWC2-201ENST00000403733 8826 ntAPPRIS P1 TSL 5 BASIC11.46□□□□□ -0.58
HLA-DMBP28068 GABPB1-202ENST00000359031 1633 ntTSL 5 BASIC11.46□□□□□ -0.58
HLA-DMBP28068 PRPF38B-202ENST00000370022 1591 ntTSL 1 (best) BASIC11.45□□□□□ -0.58
HLA-DMBP28068 STAC3-206ENST00000554578 1580 ntTSL 1 (best) BASIC11.45□□□□□ -0.58
HLA-DMBP28068 TBC1D26-206ENST00000579428 1583 ntTSL 2 BASIC11.45□□□□□ -0.58
HLA-DMBP28068 OR2C3-201ENST00000366487 8467 ntAPPRIS P1 BASIC11.45□□□□□ -0.58
HLA-DMBP28068 OSBPL7-211ENST00000613735 2836 ntTSL 1 (best) BASIC11.45□□□□□ -0.58
HLA-DMBP28068 CYB5R3-205ENST00000407623 2153 ntTSL 3 BASIC11.45□□□□□ -0.58
HLA-DMBP28068 ENAH-203ENST00000366843 2758 ntAPPRIS ALT2 TSL 1 (best) BASIC11.45□□□□□ -0.58
HLA-DMBP28068 LILRP2-201ENST00000413439 2127 ntTSL 1 (best) BASIC11.45□□□□□ -0.58
HLA-DMBP28068 MAX-219ENST00000618858 2141 ntTSL 1 (best) BASIC11.45□□□□□ -0.58
HLA-DMBP28068 ZNF663P-201ENST00000400371 2722 ntTSL 1 (best) BASIC11.45□□□□□ -0.58
HLA-DMBP28068 MROH1-209ENST00000534366 5092 ntAPPRIS ALT2 TSL 1 (best) BASIC11.45□□□□□ -0.58
HLA-DMBP28068 PIANP-202ENST00000534837 2695 ntAPPRIS ALT2 TSL 1 (best) BASIC11.45□□□□□ -0.58
HLA-DMBP28068 APOBEC3A-202ENST00000402255 1478 ntAPPRIS P1 TSL 5 BASIC11.45□□□□□ -0.58
HLA-DMBP28068 MPPED2-202ENST00000448418 5591 ntTSL 1 (best) BASIC11.45□□□□□ -0.58
HLA-DMBP28068 DRD5P1-201ENST00000456605 1438 ntBASIC11.45□□□□□ -0.58
HLA-DMBP28068 PPP1R27-202ENST00000570394 1443 ntTSL 2 BASIC11.45□□□□□ -0.58
HLA-DMBP28068 DDX20-201ENST00000369702 4212 ntAPPRIS P1 TSL 1 (best) BASIC11.45□□□□□ -0.58
HLA-DMBP28068 KIF3C-201ENST00000264712 5344 ntAPPRIS P1 TSL 1 (best) BASIC11.45□□□□□ -0.58
HLA-DMBP28068 AXL-201ENST00000301178 4737 ntAPPRIS P4 TSL 1 (best) BASIC11.45□□□□□ -0.58
HLA-DMBP28068 NCK1-201ENST00000288986 1937 ntAPPRIS P1 TSL 1 (best) BASIC11.45□□□□□ -0.58
HLA-DMBP28068 FAM174A-201ENST00000312637 1356 ntAPPRIS P1 TSL 1 (best) BASIC11.45□□□□□ -0.58
HLA-DMBP28068 RAD17-207ENST00000361732 3002 ntTSL 1 (best) BASIC11.45□□□□□ -0.58
HLA-DMBP28068 SCAF11-204ENST00000395454 1931 ntAPPRIS ALT2 TSL 1 (best) BASIC11.45□□□□□ -0.58
HLA-DMBP28068 CORO7-201ENST00000251166 3540 ntAPPRIS P1 TSL 1 (best) BASIC11.45□□□□□ -0.58
HLA-DMBP28068 PEX5L-215ENST00000485199 2992 ntAPPRIS ALT2 TSL 1 (best) BASIC11.45□□□□□ -0.58
HLA-DMBP28068 KAT5-216ENST00000534650 1875 ntTSL 1 (best) BASIC11.45□□□□□ -0.58
HLA-DMBP28068 PDGFA-201ENST00000354513 1308 ntTSL 1 (best) BASIC11.45□□□□□ -0.58
HLA-DMBP28068 IGHA1-202ENST00000641837 1310 ntAPPRIS P5 BASIC11.45□□□□□ -0.58
HLA-DMBP28068 FUK-202ENST00000378912 3925 ntTSL 2 BASIC11.45□□□□□ -0.58
HLA-DMBP28068 VCAN-211ENST00000513984 1825 ntTSL 1 (best) BASIC11.45□□□□□ -0.58
HLA-DMBP28068 PHLDB2-203ENST00000412622 5996 ntTSL 5 BASIC11.45□□□□□ -0.58
HLA-DMBP28068 ZKSCAN2-201ENST00000328086 7523 ntAPPRIS P1 TSL 1 (best) BASIC11.45□□□□□ -0.58
HLA-DMBP28068 LHB-201ENST00000221421 514 ntAPPRIS P1 TSL 1 (best) BASIC11.45□□□□□ -0.58
HLA-DMBP28068 FTH1-201ENST00000273550 1229 ntAPPRIS P1 TSL 1 (best) BASIC11.45□□□□□ -0.58
HLA-DMBP28068 LCE3E-201ENST00000368789 611 ntAPPRIS P1 TSL 1 (best) BASIC11.45□□□□□ -0.58
HLA-DMBP28068 ATP1A1-AS1-202ENST00000369492 1011 ntTSL 1 (best) BASIC11.45□□□□□ -0.58
HLA-DMBP28068 PKIG-202ENST00000372886 1180 ntAPPRIS P1 TSL 2 BASIC11.45□□□□□ -0.58
HLA-DMBP28068 ITIH1-202ENST00000405128 1122 ntTSL 2 BASIC11.45□□□□□ -0.58
HLA-DMBP28068 AL161638.1-201ENST00000420354 481 ntTSL 3 BASIC11.45□□□□□ -0.58
HLA-DMBP28068 AL845321.1-202ENST00000432011 786 ntTSL 5 BASIC11.45□□□□□ -0.58
HLA-DMBP28068 LINC01818-201ENST00000437118 368 ntTSL 2 BASIC11.45□□□□□ -0.58
HLA-DMBP28068 RNASEH1-AS1-202ENST00000438436 1218 ntTSL 1 (best) BASIC11.45□□□□□ -0.58
Retrieved 100 of 98,524 protein–RNA pairs in 43 ms