Protein–RNA interactions for Protein: P27658

COL8A1, Collagen alpha-1(VIII) chain, humanhuman

Predictions only

Length 744 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL8A1P27658 AC104809.1-201ENST00000425110 2345 ntTSL 2 BASIC13.05□□□□□ -0.32
COL8A1P27658 AMZ2P1-202ENST00000430983 3425 ntTSL 2 BASIC13.05□□□□□ -0.32
COL8A1P27658 SYBU-231ENST00000533065 2645 ntAPPRIS ALT2 TSL 2 BASIC13.05□□□□□ -0.32
COL8A1P27658 VCAN-204ENST00000502527 2087 ntAPPRIS ALT1 TSL 1 (best) BASIC13.05□□□□□ -0.32
COL8A1P27658 TMEM184C-204ENST00000508208 1528 ntTSL 1 (best) BASIC13.05□□□□□ -0.32
COL8A1P27658 NHP2-202ENST00000314397 599 ntTSL 2 BASIC13.05□□□□□ -0.32
COL8A1P27658 SUMO1-204ENST00000409181 784 ntTSL 3 BASIC13.05□□□□□ -0.32
COL8A1P27658 SUMO1-207ENST00000409498 779 ntTSL 3 BASIC13.05□□□□□ -0.32
COL8A1P27658 PRKAR2A-AS1-203ENST00000431705 592 ntTSL 4 BASIC13.05□□□□□ -0.32
COL8A1P27658 AL627422.1-201ENST00000434104 580 ntBASIC13.05□□□□□ -0.32
COL8A1P27658 ARL4AP4-201ENST00000434170 518 ntBASIC13.05□□□□□ -0.32
COL8A1P27658 MAATS1-203ENST00000463700 939 ntTSL 1 (best) BASIC13.05□□□□□ -0.32
COL8A1P27658 SLC12A8-207ENST00000469902 2989 ntAPPRIS P1 TSL 2 BASIC13.05□□□□□ -0.32
COL8A1P27658 RN7SL396P-201ENST00000471086 295 ntBASIC13.05□□□□□ -0.32
COL8A1P27658 SDR39U1-212ENST00000555365 976 ntTSL 3 BASIC13.05□□□□□ -0.32
COL8A1P27658 DUX4L46-201ENST00000566845 751 ntBASIC13.05□□□□□ -0.32
COL8A1P27658 FAM192A-218ENST00000567439 1086 ntAPPRIS P1 TSL 2 BASIC13.05□□□□□ -0.32
COL8A1P27658 MIR3908-201ENST00000579798 126 ntBASIC13.05□□□□□ -0.32
COL8A1P27658 MIR6769A-201ENST00000617340 73 ntBASIC13.05□□□□□ -0.32
COL8A1P27658 AC005618.3-201ENST00000624928 458 ntBASIC13.05□□□□□ -0.32
COL8A1P27658 AC092299.1-201ENST00000632679 757 ntBASIC13.05□□□□□ -0.32
COL8A1P27658 AL590644.3-201ENST00000635428 1228 ntTSL 5 BASIC13.05□□□□□ -0.32
COL8A1P27658 CYP1A1-203ENST00000395049 1594 ntTSL 1 (best) BASIC13.05□□□□□ -0.32
COL8A1P27658 SOX30-202ENST00000311371 2716 ntAPPRIS ALT2 TSL 1 (best) BASIC13.05□□□□□ -0.32
COL8A1P27658 GLI2-210ENST00000452319 6799 ntAPPRIS P1 TSL 5 BASIC13.05□□□□□ -0.32
COL8A1P27658 NWD2-201ENST00000309447 8325 ntAPPRIS P1 TSL 5 BASIC13.05□□□□□ -0.32
COL8A1P27658 PIKFYVE-202ENST00000308862 1640 ntTSL 1 (best) BASIC13.05□□□□□ -0.32
COL8A1P27658 IL9RP3-201ENST00000442856 1674 ntBASIC13.05□□□□□ -0.32
COL8A1P27658 NIT1-203ENST00000368009 1362 ntAPPRIS P3 TSL 1 (best) BASIC13.05□□□□□ -0.32
COL8A1P27658 GPAT4-201ENST00000396987 6298 ntAPPRIS P1 TSL 1 (best) BASIC13.05□□□□□ -0.32
COL8A1P27658 FAM83G-201ENST00000345041 2929 ntAPPRIS P1 TSL 5 BASIC13.05□□□□□ -0.32
COL8A1P27658 FAN1-207ENST00000565466 2304 ntTSL 2 BASIC13.05□□□□□ -0.32
COL8A1P27658 IL3RA-201ENST00000331035 1706 ntAPPRIS P1 TSL 1 (best) BASIC13.05□□□□□ -0.32
COL8A1P27658 SHC1P1-201ENST00000425230 1745 ntBASIC13.05□□□□□ -0.32
COL8A1P27658 DLX4-202ENST00000411890 1404 ntTSL 1 (best) BASIC13.05□□□□□ -0.32
COL8A1P27658 ABCA7-201ENST00000263094 6816 ntAPPRIS P2 TSL 5 BASIC13.05□□□□□ -0.32
COL8A1P27658 TICAM2-201ENST00000427199 3049 ntAPPRIS P1 TSL 1 (best) BASIC13.05□□□□□ -0.32
COL8A1P27658 COL11A2-203ENST00000374708 6209 ntAPPRIS P2 TSL 5 BASIC13.04□□□□□ -0.32
COL8A1P27658 NCOR2-203ENST00000404621 8520 ntAPPRIS ALT2 TSL 1 (best) BASIC13.04□□□□□ -0.32
COL8A1P27658 ANKRD35-202ENST00000544626 3093 ntTSL 5 BASIC13.04□□□□□ -0.32
COL8A1P27658 MYADM-202ENST00000391768 1492 ntAPPRIS P1 TSL 1 (best) BASIC13.04□□□□□ -0.32
COL8A1P27658 RAPSN-203ENST00000524487 1462 ntTSL 5 BASIC13.04□□□□□ -0.32
COL8A1P27658 MBOAT2-201ENST00000305997 7751 ntAPPRIS P1 TSL 1 (best) BASIC13.04□□□□□ -0.32
COL8A1P27658 DOLPP1-202ENST00000372546 2177 ntAPPRIS P1 TSL 1 (best) BASIC13.04□□□□□ -0.32
COL8A1P27658 CDKN2B-AS1-208ENST00000580576 2175 ntTSL 1 (best) BASIC13.04□□□□□ -0.32
COL8A1P27658 CLEC16A-203ENST00000409790 6891 ntAPPRIS P1 TSL 5 BASIC13.04□□□□□ -0.32
COL8A1P27658 CYP11A1-201ENST00000268053 1934 ntAPPRIS P1 TSL 1 (best) BASIC13.04□□□□□ -0.32
COL8A1P27658 F3-201ENST00000334047 2287 ntAPPRIS P1 TSL 1 (best) BASIC13.04□□□□□ -0.32
COL8A1P27658 CCP110-201ENST00000381396 5446 ntAPPRIS ALT1 TSL 1 (best) BASIC13.04□□□□□ -0.32
COL8A1P27658 NDUFA6-AS1-203ENST00000439129 2950 ntTSL 5 BASIC13.04□□□□□ -0.32
COL8A1P27658 DEF8-219ENST00000567874 1554 ntTSL 2 BASIC13.04□□□□□ -0.32
COL8A1P27658 ALOX12P2-203ENST00000570921 1945 ntBASIC13.04□□□□□ -0.32
COL8A1P27658 FYTTD1-201ENST00000241502 6866 ntAPPRIS P1 TSL 1 (best) BASIC13.04□□□□□ -0.32
COL8A1P27658 AC007950.2-201ENST00000615045 2347 ntBASIC13.04□□□□□ -0.32
COL8A1P27658 RBM4B-206ENST00000531036 1646 ntTSL 2 BASIC13.04□□□□□ -0.32
COL8A1P27658 TRIM11-201ENST00000284551 2715 ntAPPRIS P1 TSL 1 (best) BASIC13.04□□□□□ -0.32
COL8A1P27658 TMEM208-201ENST00000304800 793 ntAPPRIS P1 TSL 1 (best) BASIC13.04□□□□□ -0.32
COL8A1P27658 OR2J1-201ENST00000377171 1273 ntAPPRIS P1 BASIC13.04□□□□□ -0.32
COL8A1P27658 LY86-202ENST00000379953 1197 ntAPPRIS P1 TSL 5 BASIC13.04□□□□□ -0.32
COL8A1P27658 RBM14-204ENST00000409738 372 ntTSL 1 (best) BASIC13.04□□□□□ -0.32
COL8A1P27658 AC005392.1-201ENST00000419624 500 ntTSL 5 BASIC13.04□□□□□ -0.32
COL8A1P27658 SUMF2-210ENST00000437307 947 ntTSL 2 BASIC13.04□□□□□ -0.32
COL8A1P27658 IMPA1-203ENST00000449740 1180 ntTSL 1 (best) BASIC13.04□□□□□ -0.32
COL8A1P27658 MESTP3-201ENST00000503460 968 ntBASIC13.04□□□□□ -0.32
COL8A1P27658 APOC1P1-201ENST00000507983 630 ntTSL 4 BASIC13.04□□□□□ -0.32
COL8A1P27658 AC084346.1-201ENST00000520962 528 ntTSL 4 BASIC13.04□□□□□ -0.32
COL8A1P27658 PRB3-202ENST00000538488 1283 ntAPPRIS P5 TSL 5 BASIC13.04□□□□□ -0.32
COL8A1P27658 SDHAF2-206ENST00000542074 835 ntTSL 2 BASIC13.04□□□□□ -0.32
COL8A1P27658 PLEKHA8P1-203ENST00000545609 277 ntTSL 3 BASIC13.04□□□□□ -0.32
COL8A1P27658 AC007569.1-201ENST00000550306 600 ntTSL 3 BASIC13.04□□□□□ -0.32
COL8A1P27658 SLC25A21-203ENST00000555449 1023 ntAPPRIS ALT1 TSL 2 BASIC13.04□□□□□ -0.32
COL8A1P27658 SMIM6-201ENST00000556126 866 ntAPPRIS P1 TSL 2 BASIC13.04□□□□□ -0.32
COL8A1P27658 AC051619.5-201ENST00000559003 736 ntTSL 2 BASIC13.04□□□□□ -0.32
COL8A1P27658 AC145207.8-201ENST00000580897 563 ntTSL 4 BASIC13.04□□□□□ -0.32
COL8A1P27658 MEG3_2.1-201ENST00000611456 105 ntBASIC13.04□□□□□ -0.32
COL8A1P27658 AC087392.5-201ENST00000612517 489 ntBASIC13.04□□□□□ -0.32
COL8A1P27658 HIST1H2BE-201ENST00000614097 497 ntAPPRIS P1 BASIC13.04□□□□□ -0.32
COL8A1P27658 UPK1A-204ENST00000617999 1268 ntAPPRIS P1 TSL 5 BASIC13.04□□□□□ -0.32
COL8A1P27658 AC244250.3-201ENST00000620749 366 ntBASIC13.04□□□□□ -0.32
COL8A1P27658 MME-218ENST00000625667 363 ntTSL 5 BASIC13.04□□□□□ -0.32
COL8A1P27658 UPK3B-202ENST00000334348 2373 ntAPPRIS ALT2 TSL 2 BASIC13.04□□□□□ -0.32
COL8A1P27658 LINC02370-201ENST00000428272 2009 ntTSL 5 BASIC13.04□□□□□ -0.32
COL8A1P27658 GGT5-203ENST00000398292 2408 ntAPPRIS ALT2 TSL 1 (best) BASIC13.04□□□□□ -0.32
COL8A1P27658 SYNDIG1L-202ENST00000554823 2420 ntAPPRIS P1 TSL 3 BASIC13.04□□□□□ -0.32
COL8A1P27658 AC009093.2-202ENST00000620513 2079 ntBASIC13.04□□□□□ -0.32
COL8A1P27658 MTA3-203ENST00000406652 5484 ntTSL 1 (best) BASIC13.04□□□□□ -0.32
COL8A1P27658 TMED1-201ENST00000214869 1340 ntAPPRIS P1 TSL 1 (best) BASIC13.04□□□□□ -0.32
COL8A1P27658 INHBB-201ENST00000295228 3204 ntAPPRIS P1 TSL 1 (best) BASIC13.04□□□□□ -0.32
COL8A1P27658 FAM104A-202ENST00000405159 2865 ntTSL 1 (best) BASIC13.04□□□□□ -0.32
COL8A1P27658 GNAO1-205ENST00000563661 1351 ntTSL 2 BASIC13.04□□□□□ -0.32
COL8A1P27658 C6orf106-203ENST00000374026 4232 ntAPPRIS ALT2 TSL 2 BASIC13.04□□□□□ -0.32
COL8A1P27658 CAMLG-201ENST00000297156 2221 ntAPPRIS P1 TSL 1 (best) BASIC13.04□□□□□ -0.32
COL8A1P27658 ESRRB-207ENST00000556177 1427 ntAPPRIS P1 TSL 1 (best) BASIC13.04□□□□□ -0.32
COL8A1P27658 ZFPM2-201ENST00000407775 4700 ntAPPRIS P1 TSL 1 (best) BASIC13.04□□□□□ -0.32
COL8A1P27658 SLC39A13-201ENST00000354884 2289 ntAPPRIS P1 TSL 1 (best) BASIC13.04□□□□□ -0.32
COL8A1P27658 SLC25A45-202ENST00000398802 2286 ntAPPRIS P1 TSL 5 BASIC13.04□□□□□ -0.32
COL8A1P27658 INE2-201ENST00000630399 1874 ntBASIC13.04□□□□□ -0.32
COL8A1P27658 ELN-206ENST00000380553 2703 ntAPPRIS ALT2 TSL 2 BASIC13.04□□□□□ -0.32
COL8A1P27658 CRY2-211ENST00000616080 1936 ntAPPRIS ALT2 TSL 1 (best) BASIC13.03□□□□□ -0.32
COL8A1P27658 KLC4-202ENST00000347162 2404 ntAPPRIS ALT2 TSL 1 (best) BASIC13.03□□□□□ -0.32
Retrieved 100 of 98,524 protein–RNA pairs in 52.4 ms