Protein–RNA interactions for Protein: P0C091

FREM3, FRAS1-related extracellular matrix protein 3, humanhuman

Predictions only

Length 2,139 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
FREM3P0C091 AC090502.1-204ENST00000551210 469 ntTSL 2 BASIC13.56□□□□□ -0.24
FREM3P0C091 ZNF385A-213ENST00000551771 1111 ntTSL 1 (best) BASIC13.56□□□□□ -0.24
FREM3P0C091 AC013355.1-201ENST00000562625 723 ntBASIC13.56□□□□□ -0.24
FREM3P0C091 EDDM13-208ENST00000637802 854 ntAPPRIS P1 TSL 5 BASIC13.56□□□□□ -0.24
FREM3P0C091 AC002472.3-201ENST00000640124 621 ntBASIC13.56□□□□□ -0.24
FREM3P0C091 AC093326.2-201ENST00000640770 729 ntTSL 5 BASIC13.56□□□□□ -0.24
FREM3P0C091 OR4C6-202ENST00000641251 1058 ntAPPRIS P1 BASIC13.56□□□□□ -0.24
FREM3P0C091 PIK3IP1-201ENST00000215912 2467 ntAPPRIS P1 TSL 1 (best) BASIC13.56□□□□□ -0.24
FREM3P0C091 MAGEA2-209ENST00000623806 2025 ntAPPRIS P1 TSL 2 BASIC13.56□□□□□ -0.24
FREM3P0C091 ATP6AP2-213ENST00000636251 1877 ntAPPRIS ALT2 TSL 5 BASIC13.56□□□□□ -0.24
FREM3P0C091 DNAJA1-201ENST00000330899 2381 ntAPPRIS P1 TSL 1 (best) BASIC13.56□□□□□ -0.24
FREM3P0C091 MAGED4B-207ENST00000485287 2618 ntTSL 1 (best) BASIC13.56□□□□□ -0.24
FREM3P0C091 TNFRSF11A-206ENST00000617039 3756 ntAPPRIS ALT2 TSL 1 (best) BASIC13.56□□□□□ -0.24
FREM3P0C091 COL25A1-203ENST00000399132 2724 ntAPPRIS P4 TSL 5 BASIC13.56□□□□□ -0.24
FREM3P0C091 SEPT9-228ENST00000590294 2816 ntAPPRIS ALT2 TSL 5 BASIC13.56□□□□□ -0.24
FREM3P0C091 TMPRSS6-204ENST00000406856 3178 ntAPPRIS ALT2 TSL 1 (best) BASIC13.56□□□□□ -0.24
FREM3P0C091 EML1-201ENST00000262233 4535 ntAPPRIS P1 TSL 1 (best) BASIC13.56□□□□□ -0.24
FREM3P0C091 MRPS7-201ENST00000245539 1406 ntAPPRIS P1 TSL 1 (best) BASIC13.56□□□□□ -0.24
FREM3P0C091 PYROXD2-201ENST00000370575 2028 ntAPPRIS P1 TSL 1 (best) BASIC13.55□□□□□ -0.24
FREM3P0C091 B3GNTL1-211ENST00000576599 1787 ntTSL 2 BASIC13.55□□□□□ -0.24
FREM3P0C091 ADORA1-201ENST00000309502 2896 ntAPPRIS P1 TSL 1 (best) BASIC13.55□□□□□ -0.24
FREM3P0C091 SALL3-201ENST00000536229 3997 ntTSL 3 BASIC13.55□□□□□ -0.24
FREM3P0C091 CNBP-208ENST00000504813 1549 ntAPPRIS ALT1 TSL 2 BASIC13.55□□□□□ -0.24
FREM3P0C091 ENDOU-203ENST00000545824 1513 ntTSL 2 BASIC13.55□□□□□ -0.24
FREM3P0C091 AC117489.1-201ENST00000625169 3217 ntBASIC13.55□□□□□ -0.24
FREM3P0C091 AGER-203ENST00000375065 665 ntTSL 2 BASIC13.55□□□□□ -0.24
FREM3P0C091 KLK8-204ENST00000391806 1051 ntTSL 1 (best) BASIC13.55□□□□□ -0.24
FREM3P0C091 AC053503.1-201ENST00000429882 519 ntTSL 3 BASIC13.55□□□□□ -0.24
FREM3P0C091 GTF2H2C-215ENST00000514162 610 ntTSL 5 BASIC13.55□□□□□ -0.24
FREM3P0C091 MIR6787-201ENST00000616675 61 ntBASIC13.55□□□□□ -0.24
FREM3P0C091 LINC00665-203ENST00000438368 1863 ntTSL 5 BASIC13.55□□□□□ -0.24
FREM3P0C091 BCL10-201ENST00000370580 2819 ntAPPRIS P1 TSL 1 (best) BASIC13.55□□□□□ -0.24
FREM3P0C091 PLEKHG3-202ENST00000394691 4397 ntTSL 5 BASIC13.55□□□□□ -0.24
FREM3P0C091 TMEM19-201ENST00000266673 5656 ntAPPRIS P1 TSL 1 (best) BASIC13.55□□□□□ -0.24
FREM3P0C091 GPKOW-201ENST00000156109 1742 ntAPPRIS P1 TSL 1 (best) BASIC13.55□□□□□ -0.24
FREM3P0C091 KRT8P4-201ENST00000509735 1454 ntBASIC13.55□□□□□ -0.24
FREM3P0C091 HELZ2-202ENST00000427522 7827 ntTSL 1 (best) BASIC13.55□□□□□ -0.24
FREM3P0C091 PRKRIP1-201ENST00000397912 2159 ntAPPRIS P1 TSL 1 (best) BASIC13.55□□□□□ -0.24
FREM3P0C091 TAF11-201ENST00000361288 1580 ntAPPRIS P1 TSL 1 (best) BASIC13.55□□□□□ -0.24
FREM3P0C091 PDE8B-203ENST00000340978 3426 ntTSL 1 (best) BASIC13.55□□□□□ -0.24
FREM3P0C091 SLC52A3-202ENST00000381944 3060 ntTSL 2 BASIC13.55□□□□□ -0.24
FREM3P0C091 ATP6V1H-202ENST00000359530 2007 ntAPPRIS P1 TSL 1 (best) BASIC13.55□□□□□ -0.24
FREM3P0C091 TRAK1-208ENST00000484786 2008 ntTSL 5 BASIC13.55□□□□□ -0.24
FREM3P0C091 AHCYP2-201ENST00000430630 1300 ntBASIC13.55□□□□□ -0.24
FREM3P0C091 GCFC2-201ENST00000321027 4440 ntAPPRIS P1 TSL 1 (best) BASIC13.55□□□□□ -0.24
FREM3P0C091 PCDHA7-201ENST00000356878 2922 ntAPPRIS ALT2 BASIC13.55□□□□□ -0.24
FREM3P0C091 MALSU1-202ENST00000466681 3044 ntAPPRIS P1 TSL 1 (best) BASIC13.55□□□□□ -0.24
FREM3P0C091 SLC26A11-202ENST00000411502 2872 ntAPPRIS P1 TSL 2 BASIC13.55□□□□□ -0.24
FREM3P0C091 NFATC2-206ENST00000609943 5690 ntAPPRIS ALT2 TSL 1 (best) BASIC13.55□□□□□ -0.24
FREM3P0C091 PMS1-221ENST00000624204 3417 ntTSL 2 BASIC13.55□□□□□ -0.24
FREM3P0C091 ZNF384-202ENST00000355772 2514 ntTSL 1 (best) BASIC13.55□□□□□ -0.24
FREM3P0C091 AC099063.4-201ENST00000641099 1602 ntBASIC13.55□□□□□ -0.24
FREM3P0C091 CDCA2-201ENST00000330560 3731 ntAPPRIS P3 TSL 1 (best) BASIC13.55□□□□□ -0.24
FREM3P0C091 ZNF138-201ENST00000307355 1141 ntAPPRIS ALT2 TSL 4 BASIC13.55□□□□□ -0.24
FREM3P0C091 CFLAR-203ENST00000341222 1283 ntTSL 1 (best) BASIC13.55□□□□□ -0.24
FREM3P0C091 THAP4-202ENST00000402136 785 ntTSL 1 (best) BASIC13.55□□□□□ -0.24
FREM3P0C091 ERBB3-202ENST00000411731 1027 ntTSL 1 (best) BASIC13.55□□□□□ -0.24
FREM3P0C091 MIR663AHG-201ENST00000427348 1213 ntTSL 1 (best) BASIC13.55□□□□□ -0.24
FREM3P0C091 AL160290.2-201ENST00000448347 831 ntTSL 3 BASIC13.55□□□□□ -0.24
FREM3P0C091 CD74-212ENST00000524315 584 ntTSL 5 BASIC13.55□□□□□ -0.24
FREM3P0C091 AC113192.2-201ENST00000525320 308 ntTSL 3 BASIC13.55□□□□□ -0.24
FREM3P0C091 AC084859.1-201ENST00000533002 670 ntTSL 4 BASIC13.55□□□□□ -0.24
FREM3P0C091 COX14-203ENST00000550487 739 ntAPPRIS P1 TSL 1 (best) BASIC13.55□□□□□ -0.24
FREM3P0C091 IFT20-214ENST00000585089 1071 ntTSL 1 (best) BASIC13.55□□□□□ -0.24
FREM3P0C091 TNN-201ENST00000239462 5008 ntAPPRIS P1 TSL 2 BASIC13.55□□□□□ -0.24
FREM3P0C091 ITPK1-207ENST00000555495 3035 ntTSL 1 (best) BASIC13.55□□□□□ -0.24
FREM3P0C091 UNC13A-206ENST00000552293 5314 ntAPPRIS ALT2 TSL 5 BASIC13.55□□□□□ -0.24
FREM3P0C091 HIC2-201ENST00000407464 6798 ntAPPRIS P1 TSL 1 (best) BASIC13.55□□□□□ -0.24
FREM3P0C091 TARSL2-201ENST00000335968 3610 ntAPPRIS P2 TSL 1 (best) BASIC13.55□□□□□ -0.24
FREM3P0C091 FAM189A2-201ENST00000257515 2423 ntAPPRIS P1 TSL 1 (best) BASIC13.55□□□□□ -0.24
FREM3P0C091 PODN-202ENST00000371500 3287 ntAPPRIS ALT2 TSL 1 (best) BASIC13.55□□□□□ -0.24
FREM3P0C091 CLCN7-202ENST00000382745 4720 ntAPPRIS P1 TSL 1 (best) BASIC13.55□□□□□ -0.24
FREM3P0C091 USP10-201ENST00000219473 3009 ntAPPRIS P1 TSL 1 (best) BASIC13.54□□□□□ -0.24
FREM3P0C091 ZBTB7C-201ENST00000535628 4818 ntAPPRIS P1 TSL 1 (best) BASIC13.54□□□□□ -0.24
FREM3P0C091 SLC35G5-201ENST00000382435 1321 ntAPPRIS P1 BASIC13.54□□□□□ -0.24
FREM3P0C091 CHIA-206ENST00000430615 1320 ntTSL 1 (best) BASIC13.54□□□□□ -0.24
FREM3P0C091 LINC01285-201ENST00000412422 2289 ntTSL 2 BASIC13.54□□□□□ -0.24
FREM3P0C091 PWWP2A-201ENST00000307063 3346 ntAPPRIS P1 TSL 1 (best) BASIC13.54□□□□□ -0.24
FREM3P0C091 GPC3-202ENST00000394299 2379 ntTSL 1 (best) BASIC13.54□□□□□ -0.24
FREM3P0C091 CHAT-212ENST00000640822 1412 ntTSL 5 BASIC13.54□□□□□ -0.24
FREM3P0C091 KRT20-201ENST00000167588 1737 ntAPPRIS P1 TSL 1 (best) BASIC13.54□□□□□ -0.24
FREM3P0C091 NMNAT3-203ENST00000413939 1711 ntTSL 2 BASIC13.54□□□□□ -0.24
FREM3P0C091 AC245123.1-202ENST00000612422 1719 ntTSL 5 BASIC13.54□□□□□ -0.24
FREM3P0C091 ARHGEF16-201ENST00000378371 2219 ntTSL 1 (best) BASIC13.54□□□□□ -0.24
FREM3P0C091 HDAC5-201ENST00000225983 5326 ntAPPRIS P3 TSL 5 BASIC13.54□□□□□ -0.24
FREM3P0C091 TBC1D2-201ENST00000342112 3046 ntTSL 2 BASIC13.54□□□□□ -0.24
FREM3P0C091 PPP1R13L-202ENST00000418234 3118 ntAPPRIS P1 TSL 1 (best) BASIC13.54□□□□□ -0.24
FREM3P0C091 FZR1-201ENST00000313639 1215 ntTSL 1 (best) BASIC13.54□□□□□ -0.24
FREM3P0C091 RAB36-202ENST00000341989 936 ntTSL 1 (best) BASIC13.54□□□□□ -0.24
FREM3P0C091 LINC01694-201ENST00000424569 821 ntTSL 5 BASIC13.54□□□□□ -0.24
FREM3P0C091 DNAJC27-AS1-207ENST00000451291 488 ntTSL 3 BASIC13.54□□□□□ -0.24
FREM3P0C091 APOA2-204ENST00000464492 530 ntTSL 3 BASIC13.54□□□□□ -0.24
FREM3P0C091 CDKN2AIP-205ENST00000510928 860 ntTSL 2 BASIC13.54□□□□□ -0.24
FREM3P0C091 AC009134.1-201ENST00000571939 443 ntTSL 3 BASIC13.54□□□□□ -0.24
FREM3P0C091 AL121944.1-201ENST00000605945 686 ntTSL 2 BASIC13.54□□□□□ -0.24
FREM3P0C091 PSMC3-212ENST00000602866 1373 ntAPPRIS ALT1 TSL 1 (best) BASIC13.54□□□□□ -0.24
FREM3P0C091 TMPRSS4-214ENST00000523251 1689 ntAPPRIS ALT2 TSL 2 BASIC13.54□□□□□ -0.24
FREM3P0C091 TSC2-222ENST00000568454 5434 ntAPPRIS ALT2 TSL 2 BASIC13.54□□□□□ -0.24
FREM3P0C091 GRB7-203ENST00000394209 1955 ntAPPRIS P1 TSL 2 BASIC13.54□□□□□ -0.24
FREM3P0C091 TCP10-210ENST00000617120 2182 ntAPPRIS ALT2 TSL 5 BASIC13.54□□□□□ -0.24
Retrieved 100 of 98,524 protein–RNA pairs in 31.8 ms