Protein–RNA interactions for Protein: Q9UI33

SCN11A, Sodium channel protein type 11 subunit alpha, humanhuman

Predictions only

Length 1,791 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SCN11AQ9UI33 STOML1-206ENST00000561656 1833 ntTSL 3 BASIC18.69■□□□□ 0.58
SCN11AQ9UI33 LILRB5-202ENST00000345866 1864 ntTSL 2 BASIC18.69■□□□□ 0.58
SCN11AQ9UI33 TBCE-202ENST00000406207 2012 ntAPPRIS P3 TSL 5 BASIC18.69■□□□□ 0.58
SCN11AQ9UI33 MRPS17-201ENST00000285298 1845 ntAPPRIS P1 TSL 1 (best) BASIC18.68■□□□□ 0.58
SCN11AQ9UI33 CACNB3-201ENST00000301050 2696 ntAPPRIS P1 TSL 1 (best) BASIC18.68■□□□□ 0.58
SCN11AQ9UI33 PYY2-201ENST00000315776 282 ntBASIC18.68■□□□□ 0.58
SCN11AQ9UI33 MIR22HG-201ENST00000334146 1383 ntTSL 1 (best) BASIC18.68■□□□□ 0.58
SCN11AQ9UI33 TPM3-208ENST00000341485 2063 ntTSL 1 (best) BASIC18.68■□□□□ 0.58
SCN11AQ9UI33 ALDH8A1-204ENST00000367847 1587 ntTSL 2 BASIC18.68■□□□□ 0.58
SCN11AQ9UI33 ZDHHC4-204ENST00000396709 1485 ntAPPRIS P1 TSL 5 BASIC18.68■□□□□ 0.58
SCN11AQ9UI33 Metazoa_SRP.9-201ENST00000415635 283 ntBASIC18.68■□□□□ 0.58
SCN11AQ9UI33 AL137058.1-201ENST00000418237 673 ntTSL 5 BASIC18.68■□□□□ 0.58
SCN11AQ9UI33 RPL13AP19-201ENST00000434320 584 ntBASIC18.68■□□□□ 0.58
SCN11AQ9UI33 LYPLA2P1-203ENST00000447689 696 ntBASIC18.68■□□□□ 0.58
SCN11AQ9UI33 RGS5-216ENST00000449680 788 ntTSL 3 BASIC18.68■□□□□ 0.58
SCN11AQ9UI33 TIMP1-205ENST00000456754 1095 ntTSL 1 (best) BASIC18.68■□□□□ 0.58
SCN11AQ9UI33 GABRB2-205ENST00000517901 1779 ntTSL 5 BASIC18.68■□□□□ 0.58
SCN11AQ9UI33 AP000439.3-201ENST00000545202 2376 ntTSL 2 BASIC18.68■□□□□ 0.58
SCN11AQ9UI33 LINC01629-201ENST00000553613 581 ntTSL 4 BASIC18.68■□□□□ 0.58
SCN11AQ9UI33 AC005586.2-201ENST00000563946 837 ntBASIC18.68■□□□□ 0.58
SCN11AQ9UI33 STRADA-221ENST00000582137 1238 ntTSL 2 BASIC18.68■□□□□ 0.58
SCN11AQ9UI33 SPINT2-204ENST00000587090 1246 ntAPPRIS ALT2 TSL 3 BASIC18.68■□□□□ 0.58
SCN11AQ9UI33 AC132872.4-202ENST00000622924 2756 ntBASIC18.68■□□□□ 0.58
SCN11AQ9UI33 AL121956.4-201ENST00000629925 581 ntTSL 5 BASIC18.68■□□□□ 0.58
SCN11AQ9UI33 LZTS3-201ENST00000329152 5257 ntAPPRIS P1 TSL 1 (best) BASIC18.68■□□□□ 0.58
SCN11AQ9UI33 SNAP91-201ENST00000195649 4434 ntAPPRIS ALT2 TSL 5 BASIC18.68■□□□□ 0.58
SCN11AQ9UI33 SNAP91-204ENST00000369694 4449 ntAPPRIS P2 TSL 5 BASIC18.68■□□□□ 0.58
SCN11AQ9UI33 PTPN18-201ENST00000175756 3669 ntAPPRIS P1 TSL 1 (best) BASIC18.68■□□□□ 0.58
SCN11AQ9UI33 TNIP1-202ENST00000389378 2935 ntAPPRIS ALT2 TSL 2 BASIC18.68■□□□□ 0.58
SCN11AQ9UI33 AC005885.1-204ENST00000637885 2885 ntAPPRIS P1 TSL 5 BASIC18.68■□□□□ 0.58
SCN11AQ9UI33 MTFMT-201ENST00000220058 2734 ntAPPRIS P1 TSL 1 (best) BASIC18.68■□□□□ 0.58
SCN11AQ9UI33 CNTNAP3B-203ENST00000377561 5379 ntAPPRIS P2 TSL 1 (best) BASIC18.68■□□□□ 0.58
SCN11AQ9UI33 SAP130-202ENST00000259235 4065 ntTSL 1 (best) BASIC18.68■□□□□ 0.58
SCN11AQ9UI33 HOGA1-203ENST00000370647 1999 ntTSL 1 (best) BASIC18.68■□□□□ 0.58
SCN11AQ9UI33 GMPR2-204ENST00000420554 1864 ntTSL 1 (best) BASIC18.68■□□□□ 0.58
SCN11AQ9UI33 GMPR2-223ENST00000559836 1893 ntAPPRIS P1 TSL 1 (best) BASIC18.68■□□□□ 0.58
SCN11AQ9UI33 MICALL2-201ENST00000297508 3121 ntAPPRIS P1 TSL 1 (best) BASIC18.68■□□□□ 0.58
SCN11AQ9UI33 CSF3-201ENST00000225474 1509 ntAPPRIS P3 TSL 1 (best) BASIC18.68■□□□□ 0.58
SCN11AQ9UI33 ITGB5-201ENST00000296181 4372 ntAPPRIS P1 TSL 1 (best) BASIC18.68■□□□□ 0.58
SCN11AQ9UI33 DTX2-201ENST00000324432 2769 ntAPPRIS P3 TSL 1 (best) BASIC18.68■□□□□ 0.58
SCN11AQ9UI33 UBTF-204ENST00000436088 2738 ntAPPRIS P1 TSL 2 BASIC18.68■□□□□ 0.58
SCN11AQ9UI33 CREB3L3-201ENST00000078445 2618 ntAPPRIS P3 TSL 1 (best) BASIC18.68■□□□□ 0.58
SCN11AQ9UI33 ATP5H-201ENST00000301587 603 ntAPPRIS P1 TSL 1 (best) BASIC18.68■□□□□ 0.58
SCN11AQ9UI33 TMEM216-202ENST00000398979 908 ntTSL 1 (best) BASIC18.68■□□□□ 0.58
SCN11AQ9UI33 RN7SKP109-201ENST00000410592 316 ntBASIC18.68■□□□□ 0.58
SCN11AQ9UI33 PGAP2-208ENST00000464229 863 ntTSL 3 BASIC18.68■□□□□ 0.58
SCN11AQ9UI33 AL691482.3-201ENST00000504773 987 ntTSL 2 BASIC18.68■□□□□ 0.58
SCN11AQ9UI33 SNCB-203ENST00000506696 552 ntAPPRIS P1 TSL 5 BASIC18.68■□□□□ 0.58
SCN11AQ9UI33 RNA5SP417-201ENST00000516459 108 ntBASIC18.68■□□□□ 0.58
SCN11AQ9UI33 TMIGD2-204ENST00000600349 333 ntAPPRIS ALT2 TSL 1 (best) BASIC18.68■□□□□ 0.58
SCN11AQ9UI33 CYP4F22-202ENST00000601005 2445 ntAPPRIS P1 TSL 5 BASIC18.68■□□□□ 0.58
SCN11AQ9UI33 SLC29A1-209ENST00000427851 2171 ntAPPRIS P1 TSL 1 (best) BASIC18.67■□□□□ 0.58
SCN11AQ9UI33 NBPF3-205ENST00000454000 2133 ntAPPRIS ALT2 TSL 2 BASIC18.67■□□□□ 0.58
SCN11AQ9UI33 CLCN2-202ENST00000344937 3187 ntAPPRIS ALT2 TSL 1 (best) BASIC18.67■□□□□ 0.58
SCN11AQ9UI33 TLE3-223ENST00000560939 3021 ntTSL 5 BASIC18.67■□□□□ 0.58
SCN11AQ9UI33 LINC00554-201ENST00000564841 3011 ntBASIC18.67■□□□□ 0.58
SCN11AQ9UI33 ZNF587-203ENST00000423137 1974 ntAPPRIS ALT2 TSL 1 (best) BASIC18.67■□□□□ 0.58
SCN11AQ9UI33 TRMT2A-202ENST00000403707 2928 ntAPPRIS P3 TSL 1 (best) BASIC18.67■□□□□ 0.58
SCN11AQ9UI33 MEF2A-202ENST00000354410 5824 ntAPPRIS P3 TSL 1 (best) BASIC18.67■□□□□ 0.58
SCN11AQ9UI33 ATXN7-210ENST00000487717 3683 ntAPPRIS P3 TSL 5 BASIC18.67■□□□□ 0.58
SCN11AQ9UI33 ANXA6-211ENST00000521512 1793 ntTSL 5 BASIC18.67■□□□□ 0.58
SCN11AQ9UI33 TRPC4AP-201ENST00000252015 3226 ntAPPRIS P1 TSL 1 (best) BASIC18.67■□□□□ 0.58
SCN11AQ9UI33 RIMBP3C-202ENST00000433039 5784 ntAPPRIS P2 BASIC18.67■□□□□ 0.58
SCN11AQ9UI33 AP000866.1-201ENST00000499143 2886 ntTSL 1 (best) BASIC18.67■□□□□ 0.58
SCN11AQ9UI33 SERHL-201ENST00000359906 1346 ntTSL 1 (best) BASIC18.67■□□□□ 0.58
SCN11AQ9UI33 CALR3-201ENST00000269881 1292 ntAPPRIS P1 TSL 1 (best) BASIC18.67■□□□□ 0.58
SCN11AQ9UI33 FAM163B-201ENST00000356873 1131 ntAPPRIS P1 TSL 1 (best) BASIC18.67■□□□□ 0.58
SCN11AQ9UI33 CNR1-201ENST00000362094 1252 ntTSL 1 (best) BASIC18.67■□□□□ 0.58
SCN11AQ9UI33 TP53I3-203ENST00000407482 747 ntTSL 1 (best) BASIC18.67■□□□□ 0.58
SCN11AQ9UI33 Z97652.1-201ENST00000415176 329 ntTSL 5 BASIC18.67■□□□□ 0.58
SCN11AQ9UI33 AC012362.1-201ENST00000434906 739 ntBASIC18.67■□□□□ 0.58
SCN11AQ9UI33 NSD2-209ENST00000436793 835 ntTSL 1 (best) BASIC18.67■□□□□ 0.58
SCN11AQ9UI33 AC004837.1-201ENST00000446267 564 ntBASIC18.67■□□□□ 0.58
SCN11AQ9UI33 DPY19L2P5-201ENST00000456300 331 ntBASIC18.67■□□□□ 0.58
SCN11AQ9UI33 AC010285.2-201ENST00000510240 569 ntTSL 4 BASIC18.67■□□□□ 0.58
SCN11AQ9UI33 MPZL3-203ENST00000525386 973 ntTSL 1 (best) BASIC18.67■□□□□ 0.58
SCN11AQ9UI33 LINC01500-204ENST00000556815 752 ntTSL 3 BASIC18.67■□□□□ 0.58
SCN11AQ9UI33 MIR5196-201ENST00000578146 115 ntBASIC18.67■□□□□ 0.58
SCN11AQ9UI33 AP005901.3-201ENST00000581666 415 ntTSL 3 BASIC18.67■□□□□ 0.58
SCN11AQ9UI33 AC010335.1-201ENST00000594590 599 ntTSL 3 BASIC18.67■□□□□ 0.58
SCN11AQ9UI33 AC242426.4-201ENST00000606856 573 ntTSL 5 BASIC18.67■□□□□ 0.58
SCN11AQ9UI33 AC104506.1-201ENST00000609247 429 ntBASIC18.67■□□□□ 0.58
SCN11AQ9UI33 MLKL-202ENST00000308807 2523 ntAPPRIS P1 TSL 2 BASIC18.67■□□□□ 0.58
SCN11AQ9UI33 GLUD1-201ENST00000277865 3039 ntAPPRIS P1 TSL 1 (best) BASIC18.67■□□□□ 0.58
SCN11AQ9UI33 AC010096.1-201ENST00000443897 1709 ntTSL 1 (best) BASIC18.67■□□□□ 0.58
SCN11AQ9UI33 HIF3A-206ENST00000472815 1709 ntTSL 2 BASIC18.67■□□□□ 0.58
SCN11AQ9UI33 LINC01864-201ENST00000587218 1661 ntTSL 1 (best) BASIC18.67■□□□□ 0.58
SCN11AQ9UI33 ALDOA-209ENST00000563060 1550 ntAPPRIS P2 TSL 1 (best) BASIC18.67■□□□□ 0.58
SCN11AQ9UI33 SCUBE2-207ENST00000520467 3148 ntAPPRIS P1 TSL 2 BASIC18.67■□□□□ 0.58
SCN11AQ9UI33 MAGEA2-208ENST00000623438 2009 ntAPPRIS P1 TSL 2 BASIC18.67■□□□□ 0.58
SCN11AQ9UI33 DUOXA1-210ENST00000559014 1965 ntTSL 2 BASIC18.66■□□□□ 0.58
SCN11AQ9UI33 PARD3-206ENST00000374776 3389 ntTSL 1 (best) BASIC18.66■□□□□ 0.58
SCN11AQ9UI33 AC092384.3-202ENST00000564646 2873 ntBASIC18.66■□□□□ 0.58
SCN11AQ9UI33 DLGAP1-213ENST00000534970 2365 ntTSL 2 BASIC18.66■□□□□ 0.58
SCN11AQ9UI33 MGAT1-201ENST00000307826 2761 ntAPPRIS P1 TSL 1 (best) BASIC18.66■□□□□ 0.58
SCN11AQ9UI33 FHL2-206ENST00000408995 1367 ntAPPRIS P1 TSL 2 BASIC18.66■□□□□ 0.58
SCN11AQ9UI33 SLC29A1-204ENST00000371731 2258 ntAPPRIS P1 TSL 5 BASIC18.66■□□□□ 0.58
SCN11AQ9UI33 TSKU-205ENST00000612930 2666 ntAPPRIS P1 TSL 4 BASIC18.66■□□□□ 0.58
SCN11AQ9UI33 DUS4L-201ENST00000265720 2220 ntAPPRIS P1 TSL 2 BASIC18.66■□□□□ 0.58
SCN11AQ9UI33 GNPNAT1-203ENST00000554230 2238 ntTSL 5 BASIC18.66■□□□□ 0.58
Retrieved 100 of 98,524 protein–RNA pairs in 34.9 ms