Protein–RNA interactions for Protein: Q9UFE4

CCDC39, Coiled-coil domain-containing protein 39, humanhuman

Predictions only

Length 941 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC39Q9UFE4 FAM219A-209ENST00000445726 3644 ntAPPRIS ALT1 TSL 2 BASIC17.41■□□□□ 0.38
CCDC39Q9UFE4 SRP54-202ENST00000546080 2187 ntTSL 2 BASIC17.41■□□□□ 0.38
CCDC39Q9UFE4 CBX2-201ENST00000269399 1061 ntTSL 1 (best) BASIC17.41■□□□□ 0.38
CCDC39Q9UFE4 SIVA1-202ENST00000347067 550 ntTSL 1 (best) BASIC17.41■□□□□ 0.38
CCDC39Q9UFE4 OSTC-201ENST00000361564 1077 ntAPPRIS P1 TSL 1 (best) BASIC17.41■□□□□ 0.38
CCDC39Q9UFE4 AL161638.1-201ENST00000420354 481 ntTSL 3 BASIC17.41■□□□□ 0.38
CCDC39Q9UFE4 AL022068.1-202ENST00000432171 794 ntTSL 3 BASIC17.41■□□□□ 0.38
CCDC39Q9UFE4 RASL12-203ENST00000434605 982 ntTSL 2 BASIC17.41■□□□□ 0.38
CCDC39Q9UFE4 OST4-202ENST00000447619 458 ntAPPRIS P1 TSL 2 BASIC17.41■□□□□ 0.38
CCDC39Q9UFE4 AC106897.1-201ENST00000512874 394 ntTSL 2 BASIC17.41■□□□□ 0.38
CCDC39Q9UFE4 TMEM63A-209ENST00000537914 1018 ntTSL 1 (best) BASIC17.41■□□□□ 0.38
CCDC39Q9UFE4 RNF24-204ENST00000545616 1128 ntTSL 1 (best) BASIC17.41■□□□□ 0.38
CCDC39Q9UFE4 GZMH-203ENST00000557220 520 ntTSL 1 (best) BASIC17.41■□□□□ 0.38
CCDC39Q9UFE4 SHBG-212ENST00000575314 1146 ntTSL 1 (best) BASIC17.41■□□□□ 0.38
CCDC39Q9UFE4 LITAF-218ENST00000576036 603 ntAPPRIS P1 TSL 4 BASIC17.41■□□□□ 0.38
CCDC39Q9UFE4 GPR39-203ENST00000622084 900 ntTSL 5 BASIC17.41■□□□□ 0.38
CCDC39Q9UFE4 SERPINA4-203ENST00000557004 2012 ntAPPRIS P1 TSL 1 (best) BASIC17.41■□□□□ 0.38
CCDC39Q9UFE4 MLLT11-201ENST00000368921 4075 ntAPPRIS P1 TSL 1 (best) BASIC17.41■□□□□ 0.38
CCDC39Q9UFE4 MAPKBP1-215ENST00000514566 5394 ntTSL 1 (best) BASIC17.41■□□□□ 0.38
CCDC39Q9UFE4 RHNO1-202ENST00000461997 1655 ntAPPRIS ALT2 TSL 2 BASIC17.41■□□□□ 0.38
CCDC39Q9UFE4 CHRNA7-201ENST00000306901 6181 ntAPPRIS P3 TSL 1 (best) BASIC17.41■□□□□ 0.38
CCDC39Q9UFE4 MAPT-215ENST00000574436 1326 ntAPPRIS ALT2 TSL 5 BASIC17.41■□□□□ 0.38
CCDC39Q9UFE4 SC5D-202ENST00000392789 2258 ntAPPRIS P1 TSL 1 (best) BASIC17.41■□□□□ 0.38
CCDC39Q9UFE4 COQ8A-203ENST00000366779 5523 ntAPPRIS P1 TSL 2 BASIC17.41■□□□□ 0.38
CCDC39Q9UFE4 MSC-AS1-208ENST00000522519 1537 ntTSL 2 BASIC17.41■□□□□ 0.38
CCDC39Q9UFE4 CAMSAP1-203ENST00000409386 5730 ntAPPRIS ALT2 TSL 5 BASIC17.41■□□□□ 0.38
CCDC39Q9UFE4 PEX5-207ENST00000455147 2689 ntAPPRIS P1 TSL 2 BASIC17.41■□□□□ 0.38
CCDC39Q9UFE4 PLAGL1-201ENST00000354765 3663 ntAPPRIS P1 TSL 1 (best) BASIC17.41■□□□□ 0.38
CCDC39Q9UFE4 XG-201ENST00000381174 2315 ntAPPRIS P3 TSL 1 (best) BASIC17.41■□□□□ 0.38
CCDC39Q9UFE4 C9orf152-201ENST00000400613 2717 ntAPPRIS P1 TSL 1 (best) BASIC17.41■□□□□ 0.38
CCDC39Q9UFE4 MARVELD3-201ENST00000268485 2912 ntAPPRIS P3 TSL 1 (best) BASIC17.41■□□□□ 0.38
CCDC39Q9UFE4 TCAF2-202ENST00000411935 2906 ntTSL 5 BASIC17.41■□□□□ 0.38
CCDC39Q9UFE4 ZFP30-201ENST00000351218 6090 ntAPPRIS P1 TSL 1 (best) BASIC17.41■□□□□ 0.38
CCDC39Q9UFE4 GDPD2-204ENST00000536730 2171 ntTSL 2 BASIC17.4■□□□□ 0.38
CCDC39Q9UFE4 PDE8A-201ENST00000310298 3984 ntAPPRIS P4 TSL 1 (best) BASIC17.4■□□□□ 0.38
CCDC39Q9UFE4 TRPV4-202ENST00000418703 3247 ntAPPRIS P1 TSL 1 (best) BASIC17.4■□□□□ 0.38
CCDC39Q9UFE4 ARHGEF1-202ENST00000347545 3091 ntTSL 1 (best) BASIC17.4■□□□□ 0.38
CCDC39Q9UFE4 AC018529.2-202ENST00000611482 3087 ntBASIC17.4■□□□□ 0.38
CCDC39Q9UFE4 PML-201ENST00000268058 4508 ntAPPRIS P4 TSL 1 (best) BASIC17.4■□□□□ 0.38
CCDC39Q9UFE4 EBLN3P-202ENST00000625445 4520 ntTSL 1 (best) BASIC17.4■□□□□ 0.38
CCDC39Q9UFE4 SLC39A9-209ENST00000556605 2065 ntTSL 1 (best) BASIC17.4■□□□□ 0.38
CCDC39Q9UFE4 GOLGA8H-201ENST00000566740 1899 ntAPPRIS P1 TSL 5 BASIC17.4■□□□□ 0.38
CCDC39Q9UFE4 GOLGA8J-201ENST00000567927 1899 ntAPPRIS P1 TSL 5 BASIC17.4■□□□□ 0.38
CCDC39Q9UFE4 ENDOV-206ENST00000518901 2549 ntTSL 2 BASIC17.4■□□□□ 0.38
CCDC39Q9UFE4 LHCGR-202ENST00000401907 1477 ntTSL 5 BASIC17.4■□□□□ 0.38
CCDC39Q9UFE4 FTH1-201ENST00000273550 1229 ntAPPRIS P1 TSL 1 (best) BASIC17.4■□□□□ 0.38
CCDC39Q9UFE4 SP6-201ENST00000342234 3800 ntAPPRIS P1 TSL 1 (best) BASIC17.4■□□□□ 0.38
CCDC39Q9UFE4 VAMP1-202ENST00000396308 1113 ntAPPRIS P1 TSL 2 BASIC17.4■□□□□ 0.38
CCDC39Q9UFE4 CYSRT1-201ENST00000409414 1297 ntAPPRIS P1 TSL 1 (best) BASIC17.4■□□□□ 0.38
CCDC39Q9UFE4 AL691459.1-201ENST00000438589 407 ntTSL 3 BASIC17.4■□□□□ 0.38
CCDC39Q9UFE4 VCX3B-204ENST00000453306 868 ntAPPRIS ALT2 TSL 5 BASIC17.4■□□□□ 0.38
CCDC39Q9UFE4 SPDYE18-201ENST00000510091 1050 ntBASIC17.4■□□□□ 0.38
CCDC39Q9UFE4 C8orf88-201ENST00000517562 894 ntAPPRIS P1 TSL 2 BASIC17.4■□□□□ 0.38
CCDC39Q9UFE4 ERGIC1-212ENST00000523291 586 ntTSL 2 BASIC17.4■□□□□ 0.38
CCDC39Q9UFE4 FTH1-202ENST00000526640 786 ntTSL 2 BASIC17.4■□□□□ 0.38
CCDC39Q9UFE4 MIR210HG-203ENST00000533920 816 ntTSL 2 BASIC17.4■□□□□ 0.38
CCDC39Q9UFE4 PXN-AS1-201ENST00000535200 1170 ntTSL 2 BASIC17.4■□□□□ 0.38
CCDC39Q9UFE4 AC005498.2-205ENST00000593218 784 ntBASIC17.4■□□□□ 0.38
CCDC39Q9UFE4 CREB3L2-208ENST00000620715 1053 ntTSL 5 BASIC17.4■□□□□ 0.38
CCDC39Q9UFE4 LINC01002-214ENST00000632102 561 ntTSL 4 BASIC17.4■□□□□ 0.38
CCDC39Q9UFE4 AC004834.1-204ENST00000640670 1055 ntTSL 5 BASIC17.4■□□□□ 0.38
CCDC39Q9UFE4 IL1RN-203ENST00000361779 1922 ntTSL 1 (best) BASIC17.4■□□□□ 0.38
CCDC39Q9UFE4 VWA5B2-202ENST00000426955 4120 ntAPPRIS P1 TSL 1 (best) BASIC17.4■□□□□ 0.38
CCDC39Q9UFE4 RASGEF1A-202ENST00000374459 3264 ntAPPRIS ALT2 TSL 2 BASIC17.4■□□□□ 0.38
CCDC39Q9UFE4 GLIPR1L2-204ENST00000550916 2609 ntAPPRIS ALT2 TSL 1 (best) BASIC17.4■□□□□ 0.38
CCDC39Q9UFE4 FAM219A-203ENST00000379080 3591 ntTSL 2 BASIC17.4■□□□□ 0.38
CCDC39Q9UFE4 TUBBP5-201ENST00000290377 1563 ntTSL 1 (best) BASIC17.4■□□□□ 0.38
CCDC39Q9UFE4 NDUFC2-201ENST00000281031 2518 ntAPPRIS P1 TSL 1 (best) BASIC17.4■□□□□ 0.38
CCDC39Q9UFE4 OSBPL5-202ENST00000348039 2798 ntTSL 2 BASIC17.4■□□□□ 0.38
CCDC39Q9UFE4 SWAP70-201ENST00000318950 4882 ntAPPRIS P1 TSL 1 (best) BASIC17.39■□□□□ 0.38
CCDC39Q9UFE4 INTS11-204ENST00000421495 1868 ntTSL 2 BASIC17.39■□□□□ 0.38
CCDC39Q9UFE4 PNPLA3-201ENST00000216180 2805 ntAPPRIS P1 TSL 1 (best) BASIC17.39■□□□□ 0.38
CCDC39Q9UFE4 BIRC2-214ENST00000621637 3331 ntTSL 5 BASIC17.39■□□□□ 0.38
CCDC39Q9UFE4 KIAA0895L-201ENST00000290881 3550 ntAPPRIS P1 TSL 5 BASIC17.39■□□□□ 0.37
CCDC39Q9UFE4 AC068888.1-207ENST00000546793 2863 ntTSL 2 BASIC17.39■□□□□ 0.37
CCDC39Q9UFE4 NMNAT3-203ENST00000413939 1711 ntTSL 2 BASIC17.39■□□□□ 0.37
CCDC39Q9UFE4 RAP1GAP-211ENST00000495204 2489 ntAPPRIS ALT2 TSL 1 (best) BASIC17.39■□□□□ 0.37
CCDC39Q9UFE4 KDM1B-201ENST00000297792 3811 ntAPPRIS P1 TSL 2 BASIC17.39■□□□□ 0.37
CCDC39Q9UFE4 FKBP1B-201ENST00000380986 952 ntAPPRIS P1 TSL 1 (best) BASIC17.39■□□□□ 0.37
CCDC39Q9UFE4 RFX3-AS1-201ENST00000423112 552 ntTSL 3 BASIC17.39■□□□□ 0.37
CCDC39Q9UFE4 AL589987.1-201ENST00000453380 819 ntBASIC17.39■□□□□ 0.37
CCDC39Q9UFE4 AL606760.1-201ENST00000458151 1181 ntTSL 1 (best) BASIC17.39■□□□□ 0.37
CCDC39Q9UFE4 SLC35B4-204ENST00000470969 1033 ntTSL 1 (best) BASIC17.39■□□□□ 0.37
CCDC39Q9UFE4 AC002310.2-201ENST00000486926 950 ntTSL 2 BASIC17.39■□□□□ 0.37
CCDC39Q9UFE4 RNA5SP421-201ENST00000516864 134 ntBASIC17.39■□□□□ 0.37
CCDC39Q9UFE4 REEP4-207ENST00000523293 913 ntTSL 3 BASIC17.39■□□□□ 0.37
CCDC39Q9UFE4 TAPBPL-205ENST00000544021 772 ntTSL 3 BASIC17.39■□□□□ 0.37
CCDC39Q9UFE4 AC138304.1-201ENST00000563841 424 ntTSL 3 BASIC17.39■□□□□ 0.37
CCDC39Q9UFE4 AC011467.4-201ENST00000594891 528 ntBASIC17.39■□□□□ 0.37
CCDC39Q9UFE4 ELP1-201ENST00000374647 5905 ntAPPRIS P1 TSL 1 (best) BASIC17.39■□□□□ 0.37
CCDC39Q9UFE4 TLE1-203ENST00000376499 3893 ntAPPRIS P1 TSL 1 (best) BASIC17.39■□□□□ 0.37
CCDC39Q9UFE4 FERMT1-201ENST00000217289 5151 ntAPPRIS P1 TSL 1 (best) BASIC17.39■□□□□ 0.37
CCDC39Q9UFE4 KLHL13-207ENST00000540167 3396 ntTSL 2 BASIC17.39■□□□□ 0.37
CCDC39Q9UFE4 MINDY1-207ENST00000622754 2637 ntAPPRIS P1 TSL 1 (best) BASIC17.39■□□□□ 0.37
CCDC39Q9UFE4 DHX16-202ENST00000376442 3445 ntAPPRIS P1 TSL 1 (best) BASIC17.39■□□□□ 0.37
CCDC39Q9UFE4 MLXIPL-205ENST00000429400 3173 ntTSL 1 (best) BASIC17.39■□□□□ 0.37
CCDC39Q9UFE4 CDKN1A-208ENST00000615513 2102 ntAPPRIS P1 TSL 2 BASIC17.39■□□□□ 0.37
CCDC39Q9UFE4 DUSP28-202ENST00000405954 3461 ntAPPRIS P1 TSL 1 (best) BASIC17.39■□□□□ 0.37
CCDC39Q9UFE4 TAOK2-204ENST00000543033 4072 ntTSL 1 (best) BASIC17.39■□□□□ 0.37
CCDC39Q9UFE4 SNX30-201ENST00000374232 7622 ntAPPRIS P1 TSL 5 BASIC17.39■□□□□ 0.37
Retrieved 100 of 98,524 protein–RNA pairs in 36.4 ms