Protein–RNA interactions for Protein: Q9UBQ0

VPS29, Vacuolar protein sorting-associated protein 29, humanhuman

Predictions only

Length 182 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VPS29Q9UBQ0 TNN-203ENST00000622870 3719 ntTSL 5 BASIC14.38□□□□□ -0.11
VPS29Q9UBQ0 PHF24-201ENST00000242315 5718 ntAPPRIS P1 TSL 1 (best) BASIC14.38□□□□□ -0.11
VPS29Q9UBQ0 EID3-201ENST00000527879 1467 ntAPPRIS P1 BASIC14.38□□□□□ -0.11
VPS29Q9UBQ0 PLEKHN1-203ENST00000379410 2404 ntAPPRIS P3 TSL 1 (best) BASIC14.37□□□□□ -0.11
VPS29Q9UBQ0 GPRC5C-202ENST00000392627 2988 ntAPPRIS P3 TSL 1 (best) BASIC14.37□□□□□ -0.11
VPS29Q9UBQ0 ZNF79-202ENST00000543471 2194 ntTSL 2 BASIC14.37□□□□□ -0.11
VPS29Q9UBQ0 ZNF79-203ENST00000612342 2192 ntTSL 2 BASIC14.37□□□□□ -0.11
VPS29Q9UBQ0 SALL4P5-201ENST00000419001 1760 ntBASIC14.37□□□□□ -0.11
VPS29Q9UBQ0 RET-201ENST00000340058 4149 ntAPPRIS ALT2 TSL 1 (best) BASIC14.37□□□□□ -0.11
VPS29Q9UBQ0 UBQLN1-202ENST00000376395 4118 ntAPPRIS P1 TSL 1 (best) BASIC14.37□□□□□ -0.11
VPS29Q9UBQ0 E2F6-201ENST00000307236 3317 ntTSL 1 (best) BASIC14.37□□□□□ -0.11
VPS29Q9UBQ0 TBX5-203ENST00000405440 2203 ntAPPRIS P1 TSL 1 (best) BASIC14.37□□□□□ -0.11
VPS29Q9UBQ0 SEZ6-203ENST00000360295 4306 ntAPPRIS ALT2 TSL 5 BASIC14.37□□□□□ -0.11
VPS29Q9UBQ0 RTN4IP1-201ENST00000369063 1682 ntAPPRIS P1 TSL 1 (best) BASIC14.37□□□□□ -0.11
VPS29Q9UBQ0 RNF157-AS1-204ENST00000590137 1812 ntTSL 2 BASIC14.37□□□□□ -0.11
VPS29Q9UBQ0 PRNP-201ENST00000379440 2657 ntAPPRIS P1 TSL 1 (best) BASIC14.37□□□□□ -0.11
VPS29Q9UBQ0 PES1-201ENST00000335214 1988 ntAPPRIS ALT1 TSL 1 (best) BASIC14.37□□□□□ -0.11
VPS29Q9UBQ0 SIGLEC9-202ENST00000440804 1960 ntAPPRIS ALT2 TSL 2 BASIC14.37□□□□□ -0.11
VPS29Q9UBQ0 SNPH-203ENST00000614659 5354 ntAPPRIS ALT2 TSL 1 (best) BASIC14.37□□□□□ -0.11
VPS29Q9UBQ0 RAC2-203ENST00000405484 842 ntAPPRIS ALT1 TSL 3 BASIC14.37□□□□□ -0.11
VPS29Q9UBQ0 DGCR6-202ENST00000413981 1039 ntTSL 1 (best) BASIC14.37□□□□□ -0.11
VPS29Q9UBQ0 GOLGA6L11P-201ENST00000417252 1298 ntBASIC14.37□□□□□ -0.11
VPS29Q9UBQ0 AC007969.1-201ENST00000433675 447 ntBASIC14.37□□□□□ -0.11
VPS29Q9UBQ0 AC022447.6-201ENST00000515522 438 ntBASIC14.37□□□□□ -0.11
VPS29Q9UBQ0 CHCHD7-211ENST00000521831 573 ntTSL 2 BASIC14.37□□□□□ -0.11
VPS29Q9UBQ0 HAUS2-207ENST00000568846 709 ntTSL 3 BASIC14.37□□□□□ -0.11
VPS29Q9UBQ0 AC009486.1-201ENST00000569860 813 ntBASIC14.37□□□□□ -0.11
VPS29Q9UBQ0 PAM16-204ENST00000571941 674 ntTSL 3 BASIC14.37□□□□□ -0.11
VPS29Q9UBQ0 ZNF324B-203ENST00000594214 564 ntTSL 2 BASIC14.37□□□□□ -0.11
VPS29Q9UBQ0 WFDC1-204ENST00000613603 549 ntBASIC14.37□□□□□ -0.11
VPS29Q9UBQ0 BRD1-205ENST00000457780 4997 ntTSL 5 BASIC14.37□□□□□ -0.11
VPS29Q9UBQ0 MVK-214ENST00000629016 1591 ntTSL 5 BASIC14.37□□□□□ -0.11
VPS29Q9UBQ0 DLEU2-201ENST00000235290 1739 ntTSL 5 BASIC14.37□□□□□ -0.11
VPS29Q9UBQ0 LINC00163-201ENST00000434081 2155 ntTSL 1 (best) BASIC14.37□□□□□ -0.11
VPS29Q9UBQ0 THBS2-206ENST00000617924 5280 ntAPPRIS P1 TSL 1 (best) BASIC14.37□□□□□ -0.11
VPS29Q9UBQ0 KRT8P35-201ENST00000483942 1338 ntBASIC14.37□□□□□ -0.11
VPS29Q9UBQ0 CDC37-201ENST00000222005 1608 ntAPPRIS P1 TSL 1 (best) BASIC14.37□□□□□ -0.11
VPS29Q9UBQ0 EGFR-206ENST00000454757 5464 ntTSL 1 (best) BASIC14.37□□□□□ -0.11
VPS29Q9UBQ0 FAF1-202ENST00000396153 6817 ntAPPRIS P1 TSL 1 (best) BASIC14.37□□□□□ -0.11
VPS29Q9UBQ0 ZNF607-201ENST00000355202 4364 ntAPPRIS P3 TSL 2 BASIC14.36□□□□□ -0.11
VPS29Q9UBQ0 SLC26A11-201ENST00000361193 2885 ntAPPRIS P1 TSL 1 (best) BASIC14.36□□□□□ -0.11
VPS29Q9UBQ0 SPATA16-201ENST00000351008 2106 ntAPPRIS P1 TSL 1 (best) BASIC14.36□□□□□ -0.11
VPS29Q9UBQ0 TMEM258-207ENST00000543510 1692 ntTSL 2 BASIC14.36□□□□□ -0.11
VPS29Q9UBQ0 E2F3-201ENST00000346618 4749 ntAPPRIS P3 TSL 1 (best) BASIC14.36□□□□□ -0.11
VPS29Q9UBQ0 ENOSF1-209ENST00000580982 1397 ntTSL 5 BASIC14.36□□□□□ -0.11
VPS29Q9UBQ0 ASNA1-204ENST00000591090 1368 ntAPPRIS P1 TSL 5 BASIC14.36□□□□□ -0.11
VPS29Q9UBQ0 MAPKBP1-215ENST00000514566 5394 ntTSL 1 (best) BASIC14.36□□□□□ -0.11
VPS29Q9UBQ0 ADGRA1-AS1-202ENST00000444433 2646 ntTSL 3 BASIC14.36□□□□□ -0.11
VPS29Q9UBQ0 UBA1-201ENST00000335972 3559 ntAPPRIS P1 TSL 1 (best) BASIC14.36□□□□□ -0.11
VPS29Q9UBQ0 ATXN10-202ENST00000381061 3135 ntTSL 2 BASIC14.36□□□□□ -0.11
VPS29Q9UBQ0 BBS2-201ENST00000245157 2963 ntAPPRIS P1 TSL 1 (best) BASIC14.36□□□□□ -0.11
VPS29Q9UBQ0 GRK6P1-201ENST00000400595 1711 ntBASIC14.36□□□□□ -0.11
VPS29Q9UBQ0 KIAA1211L-201ENST00000397899 3907 ntAPPRIS P2 TSL 1 (best) BASIC14.36□□□□□ -0.11
VPS29Q9UBQ0 TRMT11-201ENST00000334379 1565 ntAPPRIS P2 TSL 1 (best) BASIC14.36□□□□□ -0.11
VPS29Q9UBQ0 ALDH8A1-204ENST00000367847 1587 ntTSL 2 BASIC14.36□□□□□ -0.11
VPS29Q9UBQ0 PSMD13-203ENST00000431206 1591 ntTSL 2 BASIC14.36□□□□□ -0.11
VPS29Q9UBQ0 TRIM50-202ENST00000453152 1599 ntAPPRIS P1 TSL 2 BASIC14.36□□□□□ -0.11
VPS29Q9UBQ0 RPARP-AS1-202ENST00000492465 1556 ntTSL 1 (best) BASIC14.36□□□□□ -0.11
VPS29Q9UBQ0 SUGP2-202ENST00000337018 3640 ntAPPRIS P3 TSL 1 (best) BASIC14.36□□□□□ -0.11
VPS29Q9UBQ0 PGPEP1-201ENST00000252813 1409 ntTSL 2 BASIC14.36□□□□□ -0.11
VPS29Q9UBQ0 RABL2B-202ENST00000395590 2380 ntTSL 2 BASIC14.36□□□□□ -0.11
VPS29Q9UBQ0 RPL39L-201ENST00000296277 756 ntAPPRIS P1 TSL 1 (best) BASIC14.36□□□□□ -0.11
VPS29Q9UBQ0 NDUFC1-201ENST00000394223 598 ntAPPRIS P1 TSL 3 BASIC14.36□□□□□ -0.11
VPS29Q9UBQ0 NDUFC1-203ENST00000394228 761 ntAPPRIS P1 TSL 2 BASIC14.36□□□□□ -0.11
VPS29Q9UBQ0 AC114730.3-201ENST00000435195 584 ntTSL 5 BASIC14.36□□□□□ -0.11
VPS29Q9UBQ0 AC093433.1-201ENST00000458048 571 ntBASIC14.36□□□□□ -0.11
VPS29Q9UBQ0 FAM104B-207ENST00000489298 712 ntAPPRIS ALT2 TSL 2 BASIC14.36□□□□□ -0.11
VPS29Q9UBQ0 AC022137.2-201ENST00000503482 481 ntBASIC14.36□□□□□ -0.11
VPS29Q9UBQ0 LCN10-206ENST00000527229 615 ntTSL 1 (best) BASIC14.36□□□□□ -0.11
VPS29Q9UBQ0 FAM212B-207ENST00000534365 1217 ntTSL 5 BASIC14.36□□□□□ -0.11
VPS29Q9UBQ0 AC006064.3-201ENST00000537921 477 ntTSL 4 BASIC14.36□□□□□ -0.11
VPS29Q9UBQ0 AC004846.2-201ENST00000556578 777 ntTSL 3 BASIC14.36□□□□□ -0.11
VPS29Q9UBQ0 IL32-235ENST00000613483 1033 ntAPPRIS ALT2 TSL 5 BASIC14.36□□□□□ -0.11
VPS29Q9UBQ0 EIF6-209ENST00000621148 1054 ntAPPRIS P1 TSL 3 BASIC14.36□□□□□ -0.11
VPS29Q9UBQ0 AL033527.5-201ENST00000641382 801 ntBASIC14.36□□□□□ -0.11
VPS29Q9UBQ0 AC117489.1-201ENST00000625169 3217 ntBASIC14.36□□□□□ -0.11
VPS29Q9UBQ0 CACNA2D1-201ENST00000356253 3858 ntTSL 5 BASIC14.36□□□□□ -0.11
VPS29Q9UBQ0 PNPLA6-202ENST00000414982 4522 ntTSL 2 BASIC14.36□□□□□ -0.11
VPS29Q9UBQ0 ALDOA-203ENST00000395248 2447 ntTSL 5 BASIC14.36□□□□□ -0.11
VPS29Q9UBQ0 TTC13-201ENST00000366661 3253 ntAPPRIS P3 TSL 1 (best) BASIC14.36□□□□□ -0.11
VPS29Q9UBQ0 HGNC:18790-211ENST00000621129 1483 ntAPPRIS P1 TSL 1 (best) BASIC14.36□□□□□ -0.11
VPS29Q9UBQ0 FANCG-201ENST00000378643 2631 ntAPPRIS P2 TSL 1 (best) BASIC14.36□□□□□ -0.11
VPS29Q9UBQ0 PPIL2-212ENST00000626352 2625 ntTSL 1 (best) BASIC14.36□□□□□ -0.11
VPS29Q9UBQ0 AC027601.5-201ENST00000624065 2482 ntBASIC14.36□□□□□ -0.11
VPS29Q9UBQ0 CYB5R2-204ENST00000524790 1338 ntTSL 1 (best) BASIC14.36□□□□□ -0.11
VPS29Q9UBQ0 SNX14-202ENST00000346348 3348 ntAPPRIS ALT2 TSL 1 (best) BASIC14.36□□□□□ -0.11
VPS29Q9UBQ0 SEZ6L-209ENST00000529632 6534 ntAPPRIS ALT2 TSL 1 (best) BASIC14.36□□□□□ -0.11
VPS29Q9UBQ0 HTR7-203ENST00000371719 3033 ntAPPRIS ALT1 TSL 1 (best) BASIC14.36□□□□□ -0.11
VPS29Q9UBQ0 DIAPH2-204ENST00000373054 3376 ntAPPRIS ALT2 TSL 5 BASIC14.36□□□□□ -0.11
VPS29Q9UBQ0 P2RX5-208ENST00000552050 1536 ntTSL 2 BASIC14.36□□□□□ -0.11
VPS29Q9UBQ0 AC108134.1-201ENST00000382225 3061 ntTSL 2 BASIC14.35□□□□□ -0.11
VPS29Q9UBQ0 KLK15-201ENST00000326856 1389 ntAPPRIS ALT1 TSL 5 BASIC14.35□□□□□ -0.11
VPS29Q9UBQ0 STX1A-201ENST00000222812 2095 ntAPPRIS P1 TSL 1 (best) BASIC14.35□□□□□ -0.11
VPS29Q9UBQ0 STX1A-204ENST00000395156 2050 ntTSL 1 (best) BASIC14.35□□□□□ -0.11
VPS29Q9UBQ0 TKT-201ENST00000296289 1931 ntTSL 5 BASIC14.35□□□□□ -0.11
VPS29Q9UBQ0 MCRS1-211ENST00000550165 1936 ntAPPRIS P1 TSL 5 BASIC14.35□□□□□ -0.11
VPS29Q9UBQ0 POLR2E-213ENST00000615234 2831 ntAPPRIS P1 TSL 1 (best) BASIC14.35□□□□□ -0.11
VPS29Q9UBQ0 CALD1-206ENST00000424922 2124 ntTSL 1 (best) BASIC14.35□□□□□ -0.11
VPS29Q9UBQ0 HPGD-202ENST00000296522 3027 ntAPPRIS P1 TSL 1 (best) BASIC14.35□□□□□ -0.11
VPS29Q9UBQ0 SCUBE1-202ENST00000360835 9808 ntAPPRIS P1 TSL 1 (best) BASIC14.35□□□□□ -0.11
Retrieved 100 of 98,524 protein–RNA pairs in 32.2 ms