Protein–RNA interactions for Protein: Q5VTR2

RNF20, E3 ubiquitin-protein ligase BRE1A, humanhuman

Predictions only

Length 975 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
RNF20Q5VTR2 FO681548.1-201ENST00000455617 1132 ntBASIC17.89■□□□□ 0.45
RNF20Q5VTR2 COG8-206ENST00000306875 4247 ntAPPRIS P1 TSL 1 (best) BASIC17.89■□□□□ 0.45
RNF20Q5VTR2 GABPB1-202ENST00000359031 1633 ntTSL 5 BASIC17.89■□□□□ 0.45
RNF20Q5VTR2 HOGA1-203ENST00000370647 1999 ntTSL 1 (best) BASIC17.89■□□□□ 0.45
RNF20Q5VTR2 AL354702.1-201ENST00000442006 1960 ntBASIC17.89■□□□□ 0.45
RNF20Q5VTR2 CYB561D1-204ENST00000420578 3326 ntAPPRIS P3 TSL 1 (best) BASIC17.89■□□□□ 0.45
RNF20Q5VTR2 KCNT1-208ENST00000488444 3696 ntAPPRIS ALT2 TSL 5 BASIC17.89■□□□□ 0.45
RNF20Q5VTR2 PLAT-205ENST00000519510 2030 ntTSL 5 BASIC17.89■□□□□ 0.45
RNF20Q5VTR2 DLGAP1-213ENST00000534970 2365 ntTSL 2 BASIC17.89■□□□□ 0.45
RNF20Q5VTR2 TPM3-208ENST00000341485 2063 ntTSL 1 (best) BASIC17.89■□□□□ 0.45
RNF20Q5VTR2 PPP1R27-202ENST00000570394 1443 ntTSL 2 BASIC17.89■□□□□ 0.45
RNF20Q5VTR2 ENO2-211ENST00000541477 2549 ntAPPRIS P1 TSL 2 BASIC17.89■□□□□ 0.45
RNF20Q5VTR2 RNF157-AS1-204ENST00000590137 1812 ntTSL 2 BASIC17.88■□□□□ 0.45
RNF20Q5VTR2 PCDHGB1-202ENST00000611598 2592 ntAPPRIS ALT2 BASIC17.88■□□□□ 0.45
RNF20Q5VTR2 AC003102.2-201ENST00000589195 1469 ntBASIC17.88■□□□□ 0.45
RNF20Q5VTR2 SLC12A8-207ENST00000469902 2989 ntAPPRIS P1 TSL 2 BASIC17.88■□□□□ 0.45
RNF20Q5VTR2 AL590132.1-202ENST00000638983 4184 ntTSL 5 BASIC17.88■□□□□ 0.45
RNF20Q5VTR2 DBR1-201ENST00000260803 2666 ntAPPRIS P1 TSL 1 (best) BASIC17.88■□□□□ 0.45
RNF20Q5VTR2 CYLD-202ENST00000398568 3536 ntAPPRIS P1 TSL 1 (best) BASIC17.88■□□□□ 0.45
RNF20Q5VTR2 TM4SF19-203ENST00000446879 1582 ntTSL 1 (best) BASIC17.88■□□□□ 0.45
RNF20Q5VTR2 STARD8-202ENST00000374597 4820 ntAPPRIS P3 TSL 1 (best) BASIC17.88■□□□□ 0.45
RNF20Q5VTR2 MSTO1-201ENST00000245564 2431 ntAPPRIS P1 TSL 1 (best) BASIC17.88■□□□□ 0.45
RNF20Q5VTR2 C20orf202-201ENST00000400633 1604 ntAPPRIS P1 TSL 1 (best) BASIC17.88■□□□□ 0.45
RNF20Q5VTR2 TMPRSS6-202ENST00000381792 3260 ntAPPRIS ALT2 TSL 5 BASIC17.88■□□□□ 0.45
RNF20Q5VTR2 AC026748.1-201ENST00000624349 3251 ntBASIC17.88■□□□□ 0.45
RNF20Q5VTR2 LETMD1-206ENST00000547008 1665 ntTSL 2 BASIC17.88■□□□□ 0.45
RNF20Q5VTR2 SS18L2-201ENST00000011691 781 ntAPPRIS P1 TSL 1 (best) BASIC17.88■□□□□ 0.45
RNF20Q5VTR2 CMA1-202ENST00000250378 937 ntAPPRIS P1 TSL 1 (best) BASIC17.88■□□□□ 0.45
RNF20Q5VTR2 MGST3-203ENST00000367885 680 ntTSL 2 BASIC17.88■□□□□ 0.45
RNF20Q5VTR2 IFI27L1-201ENST00000393115 674 ntAPPRIS P1 TSL 1 (best) BASIC17.88■□□□□ 0.45
RNF20Q5VTR2 SZT2-AS1-201ENST00000396885 699 ntTSL 3 BASIC17.88■□□□□ 0.45
RNF20Q5VTR2 AC099552.2-201ENST00000418523 456 ntTSL 3 BASIC17.88■□□□□ 0.45
RNF20Q5VTR2 AC245100.3-201ENST00000441281 285 ntBASIC17.88■□□□□ 0.45
RNF20Q5VTR2 RN7SL752P-201ENST00000463779 287 ntBASIC17.88■□□□□ 0.45
RNF20Q5VTR2 AC136601.1-201ENST00000521803 666 ntTSL 3 BASIC17.88■□□□□ 0.45
RNF20Q5VTR2 EEF1D-207ENST00000524624 1084 ntAPPRIS ALT2 TSL 5 BASIC17.88■□□□□ 0.45
RNF20Q5VTR2 HIRIP3-204ENST00000564026 988 ntTSL 2 BASIC17.88■□□□□ 0.45
RNF20Q5VTR2 AC004233.1-201ENST00000570515 608 ntTSL 4 BASIC17.88■□□□□ 0.45
RNF20Q5VTR2 A1BG-AS1-204ENST00000595302 2130 ntTSL 2 BASIC17.88■□□□□ 0.45
RNF20Q5VTR2 AC145423.3-201ENST00000615987 467 ntBASIC17.88■□□□□ 0.45
RNF20Q5VTR2 SLC38A5-212ENST00000619100 2100 ntTSL 2 BASIC17.88■□□□□ 0.45
RNF20Q5VTR2 SLC38A5-214ENST00000622196 2100 ntTSL 5 BASIC17.88■□□□□ 0.45
RNF20Q5VTR2 MSTO2P-201ENST00000314835 1709 ntBASIC17.88■□□□□ 0.45
RNF20Q5VTR2 POU5F1-204ENST00000471529 1723 ntTSL 1 (best) BASIC17.88■□□□□ 0.45
RNF20Q5VTR2 ORMDL3-202ENST00000394169 2230 ntAPPRIS P1 TSL 2 BASIC17.88■□□□□ 0.45
RNF20Q5VTR2 SIGLEC5-201ENST00000534261 2360 ntAPPRIS P1 TSL 5 BASIC17.88■□□□□ 0.45
RNF20Q5VTR2 ADAM15-204ENST00000359280 2874 ntAPPRIS ALT2 TSL 1 (best) BASIC17.88■□□□□ 0.45
RNF20Q5VTR2 TSPAN14-210ENST00000616406 2436 ntTSL 2 BASIC17.88■□□□□ 0.45
RNF20Q5VTR2 PCDHA7-201ENST00000356878 2922 ntAPPRIS ALT2 BASIC17.88■□□□□ 0.45
RNF20Q5VTR2 JPH4-205ENST00000622501 3489 ntAPPRIS ALT1 TSL 5 BASIC17.88■□□□□ 0.45
RNF20Q5VTR2 BLCAP-205ENST00000397137 2036 ntAPPRIS P1 TSL 1 (best) BASIC17.88■□□□□ 0.45
RNF20Q5VTR2 PDE3B-202ENST00000455098 3665 ntAPPRIS ALT2 TSL 1 (best) BASIC17.87■□□□□ 0.45
RNF20Q5VTR2 MSH5-203ENST00000375750 2775 ntAPPRIS P3 TSL 1 (best) BASIC17.87■□□□□ 0.45
RNF20Q5VTR2 BRF1-211ENST00000547530 3358 ntAPPRIS P1 TSL 1 (best) BASIC17.87■□□□□ 0.45
RNF20Q5VTR2 POLL-206ENST00000370172 2308 ntTSL 2 BASIC17.87■□□□□ 0.45
RNF20Q5VTR2 GPRASP1-205ENST00000537097 5980 ntAPPRIS P1 TSL 2 BASIC17.87■□□□□ 0.45
RNF20Q5VTR2 MYH11-201ENST00000300036 6029 ntAPPRIS P3 TSL 1 (best) BASIC17.87■□□□□ 0.45
RNF20Q5VTR2 DTX3-202ENST00000548198 3199 ntAPPRIS P3 TSL 2 BASIC17.87■□□□□ 0.45
RNF20Q5VTR2 MBP-203ENST00000359645 1255 ntTSL 1 (best) BASIC17.87■□□□□ 0.45
RNF20Q5VTR2 GATD1-203ENST00000397472 790 ntTSL 1 (best) BASIC17.87■□□□□ 0.45
RNF20Q5VTR2 ADAMTSL1-210ENST00000431052 824 ntTSL 2 BASIC17.87■□□□□ 0.45
RNF20Q5VTR2 PRSS42-202ENST00000447340 1280 ntTSL 2 BASIC17.87■□□□□ 0.45
RNF20Q5VTR2 SPDYE16-201ENST00000515340 858 ntAPPRIS ALT2 TSL 5 BASIC17.87■□□□□ 0.45
RNF20Q5VTR2 AC005865.1-202ENST00000543036 641 ntTSL 2 BASIC17.87■□□□□ 0.45
RNF20Q5VTR2 AC105339.1-202ENST00000559535 1283 ntTSL 5 BASIC17.87■□□□□ 0.45
RNF20Q5VTR2 AP000439.4-201ENST00000567742 664 ntTSL 3 BASIC17.87■□□□□ 0.45
RNF20Q5VTR2 DHRS7C-202ENST00000571134 984 ntAPPRIS ALT1 TSL 1 (best) BASIC17.87■□□□□ 0.45
RNF20Q5VTR2 AC005391.1-201ENST00000613285 341 ntTSL 3 BASIC17.87■□□□□ 0.45
RNF20Q5VTR2 AC010507.1-202ENST00000633286 381 ntTSL 3 BASIC17.87■□□□□ 0.45
RNF20Q5VTR2 AC025048.6-201ENST00000634326 1161 ntBASIC17.87■□□□□ 0.45
RNF20Q5VTR2 STIP1-207ENST00000538945 1900 ntTSL 2 BASIC17.87■□□□□ 0.45
RNF20Q5VTR2 BX640514.1-201ENST00000583223 1918 ntBASIC17.87■□□□□ 0.45
RNF20Q5VTR2 TRAPPC8-210ENST00000582513 3205 ntTSL 1 (best) BASIC17.87■□□□□ 0.45
RNF20Q5VTR2 TARS2-203ENST00000369054 1998 ntTSL 2 BASIC17.87■□□□□ 0.45
RNF20Q5VTR2 EFNB1-201ENST00000204961 3314 ntAPPRIS P1 TSL 1 (best) BASIC17.87■□□□□ 0.45
RNF20Q5VTR2 INHBA-205ENST00000638023 2002 ntAPPRIS P1 TSL 5 BASIC17.87■□□□□ 0.45
RNF20Q5VTR2 STX1A-201ENST00000222812 2095 ntAPPRIS P1 TSL 1 (best) BASIC17.87■□□□□ 0.45
RNF20Q5VTR2 STX1A-204ENST00000395156 2050 ntTSL 1 (best) BASIC17.87■□□□□ 0.45
RNF20Q5VTR2 GSTCD-206ENST00000507281 2091 ntTSL 5 BASIC17.87■□□□□ 0.45
RNF20Q5VTR2 SERINC2-206ENST00000536859 2072 ntTSL 2 BASIC17.87■□□□□ 0.45
RNF20Q5VTR2 ABR-205ENST00000544583 5595 ntTSL 2 BASIC17.87■□□□□ 0.45
RNF20Q5VTR2 LINC01225-202ENST00000562339 2113 ntTSL 1 (best) BASIC17.87■□□□□ 0.45
RNF20Q5VTR2 SLC25A2-201ENST00000239451 1417 ntAPPRIS P1 BASIC17.87■□□□□ 0.45
RNF20Q5VTR2 SULT2B1-202ENST00000323090 1447 ntAPPRIS ALT2 TSL 1 (best) BASIC17.87■□□□□ 0.45
RNF20Q5VTR2 UBA6-AS1-201ENST00000498917 1445 ntTSL 1 (best) BASIC17.87■□□□□ 0.45
RNF20Q5VTR2 SLC16A1-207ENST00000538576 4374 ntAPPRIS P1 TSL 2 BASIC17.87■□□□□ 0.45
RNF20Q5VTR2 SV2A-201ENST00000369145 2903 ntTSL 2 BASIC17.87■□□□□ 0.45
RNF20Q5VTR2 OPCML-IT1-201ENST00000533859 2936 ntTSL 2 BASIC17.87■□□□□ 0.45
RNF20Q5VTR2 KIAA1191-201ENST00000298569 2991 ntAPPRIS P1 TSL 1 (best) BASIC17.87■□□□□ 0.45
RNF20Q5VTR2 FECH-201ENST00000262093 3853 ntAPPRIS P3 TSL 1 (best) BASIC17.87■□□□□ 0.45
RNF20Q5VTR2 RABL2B-202ENST00000395590 2380 ntTSL 2 BASIC17.87■□□□□ 0.45
RNF20Q5VTR2 LGALS8-203ENST00000341872 2437 ntAPPRIS ALT2 TSL 1 (best) BASIC17.87■□□□□ 0.45
RNF20Q5VTR2 B4GALT3-213ENST00000622395 2414 ntAPPRIS P1 TSL 1 (best) BASIC17.87■□□□□ 0.45
RNF20Q5VTR2 WSCD1-201ENST00000317744 5819 ntAPPRIS P1 TSL 1 (best) BASIC17.87■□□□□ 0.45
RNF20Q5VTR2 CRISPLD2-203ENST00000564567 1651 ntTSL 1 (best) BASIC17.87■□□□□ 0.45
RNF20Q5VTR2 CCDC47-201ENST00000225726 3466 ntAPPRIS P1 TSL 1 (best) BASIC17.86■□□□□ 0.45
RNF20Q5VTR2 TTC39A-208ENST00000413473 2718 ntAPPRIS P4 TSL 1 (best) BASIC17.86■□□□□ 0.45
RNF20Q5VTR2 TSFM-207ENST00000540550 1935 ntTSL 2 BASIC17.86■□□□□ 0.45
RNF20Q5VTR2 PPP1CB-203ENST00000395366 4893 ntAPPRIS P1 TSL 1 (best) BASIC17.86■□□□□ 0.45
RNF20Q5VTR2 SCUBE1-202ENST00000360835 9808 ntAPPRIS P1 TSL 1 (best) BASIC17.86■□□□□ 0.45
Retrieved 100 of 98,524 protein–RNA pairs in 34.3 ms