Protein–RNA interactions for Protein: P58418

CLRN1, Clarin-1, humanhuman

Predictions only

Length 232 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CLRN1P58418 GPR17-201ENST00000272644 2062 ntAPPRIS P1 TSL 1 (best) BASIC13.43□□□□□ -0.26
CLRN1P58418 CNOT9-201ENST00000273064 4079 ntAPPRIS P1 TSL 1 (best) BASIC13.43□□□□□ -0.26
CLRN1P58418 ACIN1-201ENST00000262710 4935 ntAPPRIS P3 TSL 1 (best) BASIC13.43□□□□□ -0.26
CLRN1P58418 MAGED4B-207ENST00000485287 2618 ntTSL 1 (best) BASIC13.43□□□□□ -0.26
CLRN1P58418 DIO3OS-208ENST00000556120 2473 ntTSL 1 (best) BASIC13.42□□□□□ -0.26
CLRN1P58418 KLHDC3-203ENST00000332245 1494 ntTSL 2 BASIC13.42□□□□□ -0.26
CLRN1P58418 AC020915.1-201ENST00000413518 1469 ntAPPRIS ALT2 TSL 2 BASIC13.42□□□□□ -0.26
CLRN1P58418 AMPD2-218ENST00000528454 2728 ntTSL 2 BASIC13.42□□□□□ -0.26
CLRN1P58418 KRT8P35-201ENST00000483942 1338 ntBASIC13.42□□□□□ -0.26
CLRN1P58418 ALDOA-228ENST00000627059 2402 ntAPPRIS ALT1 TSL 5 BASIC13.42□□□□□ -0.26
CLRN1P58418 SLC25A27-201ENST00000371347 2963 ntAPPRIS P1 TSL 1 (best) BASIC13.42□□□□□ -0.26
CLRN1P58418 HMBOX1-210ENST00000523613 1730 ntTSL 1 (best) BASIC13.42□□□□□ -0.26
CLRN1P58418 ANO1-201ENST00000316296 2118 ntTSL 2 BASIC13.42□□□□□ -0.26
CLRN1P58418 SRRD-201ENST00000215917 4020 ntAPPRIS P1 TSL 1 (best) BASIC13.42□□□□□ -0.26
CLRN1P58418 BTBD11-204ENST00000420571 3478 ntTSL 5 BASIC13.42□□□□□ -0.26
CLRN1P58418 NEDD4L-238ENST00000635997 4402 ntTSL 5 BASIC13.42□□□□□ -0.26
CLRN1P58418 GPC3-202ENST00000394299 2379 ntTSL 1 (best) BASIC13.42□□□□□ -0.26
CLRN1P58418 PXDN-201ENST00000252804 6808 ntAPPRIS P1 TSL 1 (best) BASIC13.42□□□□□ -0.26
CLRN1P58418 BUD31-201ENST00000222969 1035 ntAPPRIS P1 TSL 1 (best) BASIC13.42□□□□□ -0.26
CLRN1P58418 APOA1-201ENST00000236850 1227 ntAPPRIS P1 TSL 1 (best) BASIC13.42□□□□□ -0.26
CLRN1P58418 RAB41-201ENST00000276066 1071 ntAPPRIS P2 TSL 1 (best) BASIC13.42□□□□□ -0.26
CLRN1P58418 LINC00266-1-201ENST00000279067 928 ntTSL 1 (best) BASIC13.42□□□□□ -0.26
CLRN1P58418 CACNG5-201ENST00000307139 926 ntAPPRIS P1 TSL 1 (best) BASIC13.42□□□□□ -0.26
CLRN1P58418 BANF1-201ENST00000312175 1155 ntAPPRIS P1 TSL 1 (best) BASIC13.42□□□□□ -0.26
CLRN1P58418 ACKR1-201ENST00000368121 1240 ntBASIC13.42□□□□□ -0.26
CLRN1P58418 C10orf62-201ENST00000370640 1208 ntAPPRIS P1 BASIC13.42□□□□□ -0.26
CLRN1P58418 RAB41-202ENST00000374473 1074 ntAPPRIS ALT2 TSL 5 BASIC13.42□□□□□ -0.26
CLRN1P58418 APOA1-205ENST00000375329 927 ntTSL 2 BASIC13.42□□□□□ -0.26
CLRN1P58418 KRTAP10-2-201ENST00000391621 1149 ntAPPRIS P1 BASIC13.42□□□□□ -0.26
CLRN1P58418 PGGT1BP2-201ENST00000398621 1028 ntBASIC13.42□□□□□ -0.26
CLRN1P58418 DGCR5-201ENST00000399539 862 ntBASIC13.42□□□□□ -0.26
CLRN1P58418 LSM5-207ENST00000410044 687 ntTSL 3 BASIC13.42□□□□□ -0.26
CLRN1P58418 TEX26-AS1-201ENST00000411835 1203 ntTSL 1 (best) BASIC13.42□□□□□ -0.26
CLRN1P58418 AP006294.1-201ENST00000415407 339 ntBASIC13.42□□□□□ -0.26
CLRN1P58418 AL589986.1-201ENST00000429230 789 ntTSL 5 BASIC13.42□□□□□ -0.26
CLRN1P58418 HMGB2-203ENST00000446922 1175 ntAPPRIS P1 TSL 1 (best) BASIC13.42□□□□□ -0.26
CLRN1P58418 AC140481.1-201ENST00000448777 706 ntTSL 3 BASIC13.42□□□□□ -0.26
CLRN1P58418 CRB3P1-201ENST00000449338 276 ntBASIC13.42□□□□□ -0.26
CLRN1P58418 GIMAP3P-201ENST00000495150 836 ntBASIC13.42□□□□□ -0.26
CLRN1P58418 LCN10-206ENST00000527229 615 ntTSL 1 (best) BASIC13.42□□□□□ -0.26
CLRN1P58418 AC006064.3-201ENST00000537921 477 ntTSL 4 BASIC13.42□□□□□ -0.26
CLRN1P58418 KSR1-207ENST00000578981 748 ntTSL 4 BASIC13.42□□□□□ -0.26
CLRN1P58418 ZNF180-204ENST00000586637 1023 ntTSL 5 BASIC13.42□□□□□ -0.26
CLRN1P58418 AC027307.3-201ENST00000594262 1100 ntBASIC13.42□□□□□ -0.26
CLRN1P58418 TPTE2P2-205ENST00000606711 505 ntTSL 5 BASIC13.42□□□□□ -0.26
CLRN1P58418 NDUFB1-207ENST00000617122 417 ntTSL 1 (best) BASIC13.42□□□□□ -0.26
CLRN1P58418 DACH1-204ENST00000620444 4627 ntAPPRIS ALT2 TSL 5 BASIC13.42□□□□□ -0.26
CLRN1P58418 OTUD6A-201ENST00000338352 1689 ntAPPRIS P1 BASIC13.42□□□□□ -0.26
CLRN1P58418 PAF1-201ENST00000221265 2066 ntAPPRIS P3 TSL 1 (best) BASIC13.42□□□□□ -0.26
CLRN1P58418 CDC42EP4-202ENST00000439510 2879 ntTSL 2 BASIC13.42□□□□□ -0.26
CLRN1P58418 SLC39A1-204ENST00000368623 2723 ntAPPRIS P1 TSL 1 (best) BASIC13.42□□□□□ -0.26
CLRN1P58418 TNIK-204ENST00000436636 6970 ntAPPRIS P3 TSL 1 (best) BASIC13.42□□□□□ -0.26
CLRN1P58418 IMPDH1-203ENST00000354269 2580 ntTSL 2 BASIC13.42□□□□□ -0.26
CLRN1P58418 EXTL1-201ENST00000374280 4015 ntAPPRIS P1 TSL 1 (best) BASIC13.42□□□□□ -0.26
CLRN1P58418 PUDP-202ENST00000412827 1376 ntTSL 2 BASIC13.42□□□□□ -0.26
CLRN1P58418 MAPK7-203ENST00000395602 3059 ntAPPRIS P1 TSL 1 (best) BASIC13.42□□□□□ -0.26
CLRN1P58418 FSTL4-201ENST00000265342 5419 ntAPPRIS P1 TSL 5 BASIC13.42□□□□□ -0.26
CLRN1P58418 PARVB-201ENST00000338758 5429 ntAPPRIS P1 TSL 1 (best) BASIC13.42□□□□□ -0.26
CLRN1P58418 OAS3-201ENST00000228928 6719 ntAPPRIS P1 TSL 1 (best) BASIC13.42□□□□□ -0.26
CLRN1P58418 LYSMD4-204ENST00000409796 2672 ntAPPRIS P1 TSL 1 (best) BASIC13.42□□□□□ -0.26
CLRN1P58418 AFDN-211ENST00000447894 5475 ntAPPRIS P1 TSL 5 BASIC13.42□□□□□ -0.26
CLRN1P58418 PLEKHB2-207ENST00000438882 1460 ntTSL 2 BASIC13.42□□□□□ -0.26
CLRN1P58418 OR2V1-205ENST00000642036 2609 ntAPPRIS P1 BASIC13.42□□□□□ -0.26
CLRN1P58418 NPFFR1-201ENST00000277942 8921 ntAPPRIS P1 TSL 5 BASIC13.41□□□□□ -0.26
CLRN1P58418 RIC8B-202ENST00000392837 5135 ntAPPRIS ALT2 TSL 5 BASIC13.41□□□□□ -0.26
CLRN1P58418 JAKMIP3-201ENST00000298622 6626 ntAPPRIS P1 TSL 5 BASIC13.41□□□□□ -0.26
CLRN1P58418 AC006504.5-203ENST00000590628 1335 ntTSL 1 (best) BASIC13.41□□□□□ -0.26
CLRN1P58418 TRIM50-202ENST00000453152 1599 ntAPPRIS P1 TSL 2 BASIC13.41□□□□□ -0.26
CLRN1P58418 PSMD13-215ENST00000621534 1572 ntTSL 5 BASIC13.41□□□□□ -0.26
CLRN1P58418 TLL1-206ENST00000513213 1829 ntTSL 1 (best) BASIC13.41□□□□□ -0.26
CLRN1P58418 LDLR-202ENST00000455727 2333 ntTSL 2 BASIC13.41□□□□□ -0.26
CLRN1P58418 TFAM-204ENST00000487519 5414 ntAPPRIS P1 TSL 1 (best) BASIC13.41□□□□□ -0.26
CLRN1P58418 PDGFRL-201ENST00000251630 1901 ntAPPRIS P1 TSL 5 BASIC13.41□□□□□ -0.26
CLRN1P58418 GPANK1-203ENST00000375896 1910 ntAPPRIS P1 TSL 1 (best) BASIC13.41□□□□□ -0.26
CLRN1P58418 COQ8A-203ENST00000366779 5523 ntAPPRIS P1 TSL 2 BASIC13.41□□□□□ -0.26
CLRN1P58418 ESRRB-207ENST00000556177 1427 ntAPPRIS P1 TSL 1 (best) BASIC13.41□□□□□ -0.26
CLRN1P58418 TCHH-202ENST00000614923 6995 ntAPPRIS P1 TSL 5 BASIC13.41□□□□□ -0.26
CLRN1P58418 CSDC2-201ENST00000306149 2777 ntAPPRIS P1 TSL 1 (best) BASIC13.41□□□□□ -0.26
CLRN1P58418 ZNF557-201ENST00000252840 2268 ntAPPRIS P3 TSL 1 (best) BASIC13.41□□□□□ -0.26
CLRN1P58418 POM121-201ENST00000358357 5320 ntAPPRIS P3 TSL 1 (best) BASIC13.41□□□□□ -0.26
CLRN1P58418 TDRD10-201ENST00000368480 1776 ntAPPRIS ALT2 TSL 2 BASIC13.41□□□□□ -0.26
CLRN1P58418 AC023632.2-201ENST00000523011 1789 ntTSL 2 BASIC13.41□□□□□ -0.26
CLRN1P58418 USE1-206ENST00000595101 1776 ntTSL 2 BASIC13.41□□□□□ -0.26
CLRN1P58418 PDLIM2-201ENST00000265810 4592 ntTSL 1 (best) BASIC13.41□□□□□ -0.26
CLRN1P58418 ENDOU-203ENST00000545824 1513 ntTSL 2 BASIC13.41□□□□□ -0.26
CLRN1P58418 ACVR1B-206ENST00000542485 2362 ntTSL 2 BASIC13.41□□□□□ -0.26
CLRN1P58418 B9D1-201ENST00000261499 908 ntAPPRIS P1 TSL 1 (best) BASIC13.41□□□□□ -0.26
CLRN1P58418 TCEAL3-202ENST00000372627 1113 ntAPPRIS P1 TSL 1 (best) BASIC13.41□□□□□ -0.26
CLRN1P58418 B9D1-203ENST00000395615 805 ntTSL 3 BASIC13.41□□□□□ -0.26
CLRN1P58418 ACTBP8-201ENST00000403258 1108 ntBASIC13.41□□□□□ -0.26
CLRN1P58418 METTL21A-202ENST00000406927 1103 ntAPPRIS P1 TSL 1 (best) BASIC13.41□□□□□ -0.26
CLRN1P58418 HMGN1P19-201ENST00000436976 333 ntBASIC13.41□□□□□ -0.26
CLRN1P58418 ZNF707-203ENST00000442058 562 ntTSL 4 BASIC13.41□□□□□ -0.26
CLRN1P58418 TMEM191A-209ENST00000452055 788 ntTSL 2 BASIC13.41□□□□□ -0.26
CLRN1P58418 FAM104B-207ENST00000489298 712 ntAPPRIS ALT2 TSL 2 BASIC13.41□□□□□ -0.26
CLRN1P58418 AC005342.2-201ENST00000544163 315 ntTSL 3 BASIC13.41□□□□□ -0.26
CLRN1P58418 DUX4L47-201ENST00000566374 394 ntBASIC13.41□□□□□ -0.26
CLRN1P58418 CLUHP6-201ENST00000580789 941 ntBASIC13.41□□□□□ -0.26
CLRN1P58418 AC004477.1-202ENST00000584428 539 ntTSL 2 BASIC13.41□□□□□ -0.26
CLRN1P58418 AC008805.2-201ENST00000590069 435 ntTSL 5 BASIC13.41□□□□□ -0.26
Retrieved 100 of 98,524 protein–RNA pairs in 64.8 ms