Protein–RNA interactions for Protein: P52701

MSH6, DNA mismatch repair protein Msh6, humanhuman

Predictions only

Length 1,360 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
MSH6P52701 ASB6-203ENST00000450050 4535 ntTSL 1 (best) BASIC20.29■□□□□ 0.84
MSH6P52701 ARHGAP6-202ENST00000337414 5117 ntAPPRIS P4 TSL 1 (best) BASIC20.28■□□□□ 0.84
MSH6P52701 DGKZ-201ENST00000318201 3213 ntTSL 2 BASIC20.28■□□□□ 0.84
MSH6P52701 FBLIM1-202ENST00000375766 3695 ntAPPRIS P1 TSL 2 BASIC20.28■□□□□ 0.84
MSH6P52701 LRRFIP2-205ENST00000421276 2522 ntTSL 2 BASIC20.28■□□□□ 0.84
MSH6P52701 NSUN5P1-206ENST00000457988 1836 ntTSL 2 BASIC20.28■□□□□ 0.84
MSH6P52701 GSR-201ENST00000221130 3119 ntAPPRIS P3 TSL 1 (best) BASIC20.28■□□□□ 0.84
MSH6P52701 CLEC18A-209ENST00000615430 2215 ntAPPRIS P2 TSL 5 BASIC20.28■□□□□ 0.84
MSH6P52701 CLEC18C-211ENST00000618957 2215 ntAPPRIS P2 TSL 5 BASIC20.28■□□□□ 0.84
MSH6P52701 CLEC18B-205ENST00000619275 2215 ntAPPRIS ALT2 TSL 5 BASIC20.28■□□□□ 0.84
MSH6P52701 SLC1A5-201ENST00000412532 1750 ntTSL 2 BASIC20.28■□□□□ 0.84
MSH6P52701 SASH1-201ENST00000367467 7711 ntAPPRIS P1 TSL 1 (best) BASIC20.28■□□□□ 0.84
MSH6P52701 PRRT2-214ENST00000637064 2153 ntAPPRIS P1 TSL 5 BASIC20.28■□□□□ 0.84
MSH6P52701 ADCY9-201ENST00000294016 7725 ntAPPRIS P1 TSL 1 (best) BASIC20.28■□□□□ 0.84
MSH6P52701 IRS2-201ENST00000375856 8138 ntAPPRIS P1 TSL 1 (best) BASIC20.28■□□□□ 0.84
MSH6P52701 PTGER4P2-201ENST00000328411 252 ntBASIC20.28■□□□□ 0.84
MSH6P52701 MCM7-203ENST00000354230 2975 ntTSL 2 BASIC20.28■□□□□ 0.84
MSH6P52701 RASGRP2-206ENST00000377494 2983 ntAPPRIS ALT1 TSL 2 BASIC20.28■□□□□ 0.84
MSH6P52701 PPM1N-205ENST00000401705 771 ntTSL 3 BASIC20.28■□□□□ 0.84
MSH6P52701 KCNK16-204ENST00000437525 981 ntAPPRIS P1 TSL 1 (best) BASIC20.28■□□□□ 0.84
MSH6P52701 PTGER4P3-201ENST00000458150 252 ntBASIC20.28■□□□□ 0.84
MSH6P52701 LINC02171-201ENST00000508619 1033 ntTSL 1 (best) BASIC20.28■□□□□ 0.84
MSH6P52701 RNA5SP406-201ENST00000516106 112 ntBASIC20.28■□□□□ 0.84
MSH6P52701 AC037486.1-201ENST00000523792 790 ntTSL 1 (best) BASIC20.28■□□□□ 0.84
MSH6P52701 AP002387.1-201ENST00000529369 680 ntTSL 2 BASIC20.28■□□□□ 0.84
MSH6P52701 JKAMP-207ENST00000554271 2137 ntTSL 2 BASIC20.28■□□□□ 0.84
MSH6P52701 COL26A1-203ENST00000613501 2970 ntAPPRIS ALT2 TSL 1 (best) BASIC20.28■□□□□ 0.84
MSH6P52701 CRYL1-201ENST00000298248 1485 ntAPPRIS P1 TSL 1 (best) BASIC20.28■□□□□ 0.84
MSH6P52701 FEN1-201ENST00000305885 2296 ntAPPRIS P1 TSL 1 (best) BASIC20.28■□□□□ 0.84
MSH6P52701 MAEL-201ENST00000367870 1831 ntTSL 1 (best) BASIC20.28■□□□□ 0.84
MSH6P52701 GAS7-213ENST00000580865 2417 ntTSL 1 (best) BASIC20.28■□□□□ 0.84
MSH6P52701 CAAP1-201ENST00000333916 2791 ntAPPRIS P1 TSL 1 (best) BASIC20.28■□□□□ 0.84
MSH6P52701 IL1RAP-209ENST00000422940 1957 ntTSL 1 (best) BASIC20.28■□□□□ 0.84
MSH6P52701 LILRP1-201ENST00000444199 1370 ntBASIC20.27■□□□□ 0.84
MSH6P52701 PDGFA-203ENST00000402802 2305 ntAPPRIS P1 TSL 1 (best) BASIC20.27■□□□□ 0.84
MSH6P52701 CELF4-223ENST00000603232 1906 ntAPPRIS ALT1 TSL 1 (best) BASIC20.27■□□□□ 0.84
MSH6P52701 GINS2-201ENST00000253462 2673 ntAPPRIS P1 TSL 1 (best) BASIC20.27■□□□□ 0.84
MSH6P52701 PHB-210ENST00000511832 1509 ntTSL 2 BASIC20.27■□□□□ 0.84
MSH6P52701 AC013726.1-201ENST00000563747 2285 ntBASIC20.27■□□□□ 0.84
MSH6P52701 ZNF423-206ENST00000563137 4911 ntAPPRIS ALT2 TSL 5 BASIC20.27■□□□□ 0.84
MSH6P52701 COQ3-201ENST00000254759 1335 ntAPPRIS P1 TSL 1 (best) BASIC20.27■□□□□ 0.84
MSH6P52701 STAG1-206ENST00000480733 1304 ntTSL 2 BASIC20.27■□□□□ 0.84
MSH6P52701 TIPRL-202ENST00000367833 3032 ntAPPRIS P1 TSL 1 (best) BASIC20.27■□□□□ 0.84
MSH6P52701 ZNF574-202ENST00000359044 2940 ntAPPRIS P1 TSL 1 (best) BASIC20.27■□□□□ 0.84
MSH6P52701 RRAGD-202ENST00000369415 4900 ntAPPRIS P1 TSL 1 (best) BASIC20.27■□□□□ 0.84
MSH6P52701 CRYGC-201ENST00000282141 629 ntAPPRIS P1 TSL 1 (best) BASIC20.27■□□□□ 0.84
MSH6P52701 OR2K2-201ENST00000302681 1078 ntAPPRIS P1 BASIC20.27■□□□□ 0.84
MSH6P52701 CXorf40A-205ENST00000423540 1208 ntAPPRIS P3 TSL 1 (best) BASIC20.27■□□□□ 0.84
MSH6P52701 AL583839.1-201ENST00000445280 691 ntTSL 3 BASIC20.27■□□□□ 0.84
MSH6P52701 AC112487.1-201ENST00000498032 1097 ntTSL 1 (best) BASIC20.27■□□□□ 0.84
MSH6P52701 NMNAT3-213ENST00000512391 794 ntTSL 3 BASIC20.27■□□□□ 0.84
MSH6P52701 ANAPC15-204ENST00000535234 848 ntAPPRIS P3 TSL 2 BASIC20.27■□□□□ 0.84
MSH6P52701 FAM32A-204ENST00000588367 798 ntTSL 2 BASIC20.27■□□□□ 0.84
MSH6P52701 BTBD1-201ENST00000261721 3297 ntAPPRIS P1 TSL 1 (best) BASIC20.27■□□□□ 0.84
MSH6P52701 IFT140-203ENST00000426508 5270 ntAPPRIS P1 TSL 5 BASIC20.27■□□□□ 0.84
MSH6P52701 ATF4-202ENST00000396680 1419 ntAPPRIS P1 TSL 1 (best) BASIC20.27■□□□□ 0.84
MSH6P52701 FP565260.6-203ENST00000620015 1435 ntTSL 3 BASIC20.27■□□□□ 0.84
MSH6P52701 CD83-201ENST00000379153 2471 ntAPPRIS P1 TSL 1 (best) BASIC20.27■□□□□ 0.84
MSH6P52701 LUC7L3-202ENST00000393227 2284 ntTSL 1 (best) BASIC20.27■□□□□ 0.84
MSH6P52701 RUBCNL-212ENST00000631139 1948 ntAPPRIS ALT2 TSL 2 BASIC20.27■□□□□ 0.84
MSH6P52701 EXTL3-201ENST00000220562 6483 ntAPPRIS P1 TSL 1 (best) BASIC20.27■□□□□ 0.83
MSH6P52701 SLC35G3-201ENST00000297307 2004 ntAPPRIS P1 BASIC20.27■□□□□ 0.83
MSH6P52701 GPR161-204ENST00000367838 2676 ntAPPRIS P1 TSL 1 (best) BASIC20.26■□□□□ 0.83
MSH6P52701 NIFK-AS1-203ENST00000419902 1316 ntTSL 2 BASIC20.26■□□□□ 0.83
MSH6P52701 GFM1-208ENST00000478576 2147 ntTSL 2 BASIC20.26■□□□□ 0.83
MSH6P52701 PTPA-203ENST00000348141 2737 ntTSL 5 BASIC20.26■□□□□ 0.83
MSH6P52701 PTPA-207ENST00000393370 2737 ntAPPRIS P1 TSL 1 (best) BASIC20.26■□□□□ 0.83
MSH6P52701 AL365203.3-201ENST00000609742 2057 ntBASIC20.26■□□□□ 0.83
MSH6P52701 APOA1-203ENST00000375320 940 ntAPPRIS P1 TSL 3 BASIC20.26■□□□□ 0.83
MSH6P52701 GULP1-204ENST00000409637 1242 ntTSL 2 BASIC20.26■□□□□ 0.83
MSH6P52701 AC023141.7-201ENST00000430646 407 ntBASIC20.26■□□□□ 0.83
MSH6P52701 GNAT1-202ENST00000433068 1224 ntAPPRIS P1 TSL 5 BASIC20.26■□□□□ 0.83
MSH6P52701 LINC00686-201ENST00000435412 332 ntTSL 3 BASIC20.26■□□□□ 0.83
MSH6P52701 HVCN1-203ENST00000439744 1215 ntTSL 2 BASIC20.26■□□□□ 0.83
MSH6P52701 LRRC75A-AS1-213ENST00000484836 821 ntTSL 2 BASIC20.26■□□□□ 0.83
MSH6P52701 AC022858.1-202ENST00000521084 393 ntTSL 3 BASIC20.26■□□□□ 0.83
MSH6P52701 TMEM202-AS1-201ENST00000562573 723 ntTSL 3 BASIC20.26■□□□□ 0.83
MSH6P52701 C19orf70-203ENST00000587589 577 ntTSL 5 BASIC20.26■□□□□ 0.83
MSH6P52701 AQP7-213ENST00000624075 1270 ntTSL 2 BASIC20.26■□□□□ 0.83
MSH6P52701 TMED7-TICAM2-201ENST00000282382 3491 ntAPPRIS P1 TSL 2 BASIC20.26■□□□□ 0.83
MSH6P52701 CERS3-202ENST00000394113 2045 ntAPPRIS P1 TSL 1 (best) BASIC20.26■□□□□ 0.83
MSH6P52701 LAD1-201ENST00000367313 2336 ntTSL 1 (best) BASIC20.26■□□□□ 0.83
MSH6P52701 AC023090.2-201ENST00000625182 2110 ntBASIC20.26■□□□□ 0.83
MSH6P52701 CD34-202ENST00000356522 2874 ntTSL 1 (best) BASIC20.26■□□□□ 0.83
MSH6P52701 AC009237.3-202ENST00000608013 3042 ntTSL 1 (best) BASIC20.26■□□□□ 0.83
MSH6P52701 MAPK8IP3-201ENST00000250894 5661 ntAPPRIS P3 TSL 1 (best) BASIC20.26■□□□□ 0.83
MSH6P52701 AMMECR1-201ENST00000262844 5504 ntAPPRIS P3 TSL 1 (best) BASIC20.26■□□□□ 0.83
MSH6P52701 G6PD-201ENST00000369620 1799 ntTSL 5 BASIC20.26■□□□□ 0.83
MSH6P52701 PABPC4-203ENST00000372858 2753 ntTSL 1 (best) BASIC20.25■□□□□ 0.83
MSH6P52701 FAM151A-201ENST00000302250 2005 ntAPPRIS P2 TSL 1 (best) BASIC20.25■□□□□ 0.83
MSH6P52701 BBS1-203ENST00000455748 1552 ntTSL 2 BASIC20.25■□□□□ 0.83
MSH6P52701 COX14-201ENST00000317943 708 ntAPPRIS P1 TSL 2 BASIC20.25■□□□□ 0.83
MSH6P52701 CUTA-203ENST00000374500 937 ntTSL 1 (best) BASIC20.25■□□□□ 0.83
MSH6P52701 ADGRG2-208ENST00000379873 4698 ntTSL 1 (best) BASIC20.25■□□□□ 0.83
MSH6P52701 AL445931.1-201ENST00000412181 2112 ntTSL 2 BASIC20.25■□□□□ 0.83
MSH6P52701 ACYP2-204ENST00000422521 1115 ntTSL 5 BASIC20.25■□□□□ 0.83
MSH6P52701 CALCA-205ENST00000486207 851 ntAPPRIS P1 TSL 5 BASIC20.25■□□□□ 0.83
MSH6P52701 LINC02063-201ENST00000503415 566 ntTSL 4 BASIC20.25■□□□□ 0.83
MSH6P52701 NACA-221ENST00000552540 1074 ntAPPRIS P1 TSL 1 (best) BASIC20.25■□□□□ 0.83
MSH6P52701 MBP-238ENST00000580402 915 ntTSL 5 BASIC20.25■□□□□ 0.83
Retrieved 100 of 98,524 protein–RNA pairs in 32.2 ms