Protein–RNA interactions for Protein: P12004

PCNA, Proliferating cell nuclear antigen, humanhuman

Predictions only

Length 261 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PCNAP12004 MED12L-203ENST00000422248 2757 ntAPPRIS ALT2 TSL 2 BASIC14.68□□□□□ -0.06
PCNAP12004 SP140L-204ENST00000444636 1781 ntTSL 5 BASIC14.68□□□□□ -0.06
PCNAP12004 PRKD2-202ENST00000433867 3321 ntAPPRIS P3 TSL 5 BASIC14.68□□□□□ -0.06
PCNAP12004 OSMR-201ENST00000274276 5539 ntAPPRIS P1 TSL 1 (best) BASIC14.67□□□□□ -0.06
PCNAP12004 OPA1-202ENST00000361510 6492 ntAPPRIS ALT2 TSL 5 BASIC14.67□□□□□ -0.06
PCNAP12004 FGFR3-203ENST00000352904 3733 ntTSL 1 (best) BASIC14.67□□□□□ -0.06
PCNAP12004 SEZ6-201ENST00000317338 4471 ntAPPRIS P4 TSL 1 (best) BASIC14.67□□□□□ -0.06
PCNAP12004 CNKSR2-203ENST00000425654 5668 ntTSL 1 (best) BASIC14.67□□□□□ -0.06
PCNAP12004 AMT-204ENST00000427987 1646 ntTSL 5 BASIC14.67□□□□□ -0.06
PCNAP12004 PLAGL1-201ENST00000354765 3663 ntAPPRIS P1 TSL 1 (best) BASIC14.67□□□□□ -0.06
PCNAP12004 CACNA2D1-201ENST00000356253 3858 ntTSL 5 BASIC14.67□□□□□ -0.06
PCNAP12004 SIPA1-203ENST00000527525 3235 ntTSL 2 BASIC14.67□□□□□ -0.06
PCNAP12004 MRPS17-201ENST00000285298 1845 ntAPPRIS P1 TSL 1 (best) BASIC14.67□□□□□ -0.06
PCNAP12004 PIGG-202ENST00000383028 2787 ntTSL 1 (best) BASIC14.67□□□□□ -0.06
PCNAP12004 ANO10-213ENST00000451430 2019 ntTSL 2 BASIC14.67□□□□□ -0.06
PCNAP12004 MRPL16-201ENST00000300151 1182 ntAPPRIS P1 TSL 1 (best) BASIC14.67□□□□□ -0.06
PCNAP12004 MAP9-202ENST00000379248 1165 ntTSL 1 (best) BASIC14.67□□□□□ -0.06
PCNAP12004 MIR661-201ENST00000384842 89 ntBASIC14.67□□□□□ -0.06
PCNAP12004 NDUFA3-203ENST00000391763 338 ntTSL 2 BASIC14.67□□□□□ -0.06
PCNAP12004 AC087499.6-201ENST00000411576 835 ntBASIC14.67□□□□□ -0.06
PCNAP12004 DHDDS-206ENST00000427245 868 ntTSL 5 BASIC14.67□□□□□ -0.06
PCNAP12004 FAM207CP-201ENST00000443486 507 ntBASIC14.67□□□□□ -0.06
PCNAP12004 MYCLP2-201ENST00000449268 967 ntBASIC14.67□□□□□ -0.06
PCNAP12004 AC025442.1-201ENST00000521596 481 ntTSL 2 BASIC14.67□□□□□ -0.06
PCNAP12004 HBS1L-208ENST00000525067 582 ntTSL 3 BASIC14.67□□□□□ -0.06
PCNAP12004 AC067930.5-201ENST00000531730 1173 ntTSL 2 BASIC14.67□□□□□ -0.06
PCNAP12004 YEATS4-202ENST00000548020 1100 ntTSL 2 BASIC14.67□□□□□ -0.06
PCNAP12004 AC007569.1-201ENST00000550306 600 ntTSL 3 BASIC14.67□□□□□ -0.06
PCNAP12004 LINC01220-201ENST00000558575 715 ntTSL 1 (best) BASIC14.67□□□□□ -0.06
PCNAP12004 AC079336.2-201ENST00000578408 927 ntTSL 3 BASIC14.67□□□□□ -0.06
PCNAP12004 RN7SL204P-201ENST00000582831 262 ntBASIC14.67□□□□□ -0.06
PCNAP12004 AC008758.5-201ENST00000595562 617 ntAPPRIS P1 TSL 4 BASIC14.67□□□□□ -0.06
PCNAP12004 AL355385.1-201ENST00000606123 409 ntBASIC14.67□□□□□ -0.06
PCNAP12004 BX539320.1-201ENST00000623759 877 ntBASIC14.67□□□□□ -0.06
PCNAP12004 AC008761.3-201ENST00000624803 892 ntBASIC14.67□□□□□ -0.06
PCNAP12004 RIMS1-214ENST00000518273 4116 ntTSL 5 BASIC14.67□□□□□ -0.06
PCNAP12004 FRMD5-209ENST00000484674 2319 ntTSL 2 BASIC14.67□□□□□ -0.06
PCNAP12004 ANKLE2-210ENST00000542657 2446 ntTSL 2 BASIC14.67□□□□□ -0.06
PCNAP12004 C7orf49-201ENST00000393114 1482 ntAPPRIS P1 TSL 1 (best) BASIC14.67□□□□□ -0.06
PCNAP12004 COPS7B-224ENST00000620578 2500 ntTSL 2 BASIC14.67□□□□□ -0.06
PCNAP12004 TMPRSS9-201ENST00000332578 3331 ntAPPRIS P1 TSL 1 (best) BASIC14.67□□□□□ -0.06
PCNAP12004 DNAJC22-201ENST00000395069 2059 ntAPPRIS P1 TSL 1 (best) BASIC14.67□□□□□ -0.06
PCNAP12004 MFSD11-211ENST00000588460 3612 ntAPPRIS P1 TSL 2 BASIC14.67□□□□□ -0.06
PCNAP12004 GPANK1-205ENST00000375906 2793 ntAPPRIS P1 TSL 2 BASIC14.67□□□□□ -0.06
PCNAP12004 TMBIM4-202ENST00000358230 2952 ntAPPRIS P1 TSL 1 (best) BASIC14.67□□□□□ -0.06
PCNAP12004 SPECC1-202ENST00000395522 2982 ntTSL 1 (best) BASIC14.67□□□□□ -0.06
PCNAP12004 MLXIPL-205ENST00000429400 3173 ntTSL 1 (best) BASIC14.67□□□□□ -0.06
PCNAP12004 AC093525.8-201ENST00000624099 1342 ntBASIC14.66□□□□□ -0.06
PCNAP12004 ECHDC2-203ENST00000371522 1509 ntAPPRIS P1 TSL 1 (best) BASIC14.66□□□□□ -0.06
PCNAP12004 AMT-232ENST00000636199 1546 ntTSL 5 BASIC14.66□□□□□ -0.06
PCNAP12004 FGF7P3-202ENST00000640245 1707 ntTSL 4 BASIC14.66□□□□□ -0.06
PCNAP12004 HDHD3-201ENST00000238379 1834 ntAPPRIS P1 TSL 1 (best) BASIC14.66□□□□□ -0.06
PCNAP12004 CTBP1-AS2-206ENST00000581398 5652 ntBASIC14.66□□□□□ -0.06
PCNAP12004 TRAK1-208ENST00000484786 2008 ntTSL 5 BASIC14.66□□□□□ -0.06
PCNAP12004 ADGRE2-208ENST00000595839 2046 ntTSL 5 BASIC14.66□□□□□ -0.06
PCNAP12004 DAAM2-201ENST00000274867 6194 ntAPPRIS ALT1 TSL 1 (best) BASIC14.66□□□□□ -0.06
PCNAP12004 USP31-203ENST00000567975 2142 ntTSL 2 BASIC14.66□□□□□ -0.06
PCNAP12004 PIGT-202ENST00000279036 2245 ntAPPRIS P1 TSL 1 (best) BASIC14.66□□□□□ -0.06
PCNAP12004 RTP1-201ENST00000312295 2217 ntAPPRIS P1 TSL 1 (best) BASIC14.66□□□□□ -0.06
PCNAP12004 SF1-209ENST00000433274 2317 ntTSL 2 BASIC14.66□□□□□ -0.06
PCNAP12004 F8-201ENST00000330287 2620 ntTSL 1 (best) BASIC14.66□□□□□ -0.06
PCNAP12004 RBPMS-202ENST00000320203 3110 ntAPPRIS P3 TSL 1 (best) BASIC14.66□□□□□ -0.06
PCNAP12004 OSBPL5-203ENST00000389989 3619 ntTSL 1 (best) BASIC14.66□□□□□ -0.06
PCNAP12004 AC097359.2-201ENST00000604992 2389 ntBASIC14.66□□□□□ -0.06
PCNAP12004 RNPS1-216ENST00000565678 2298 ntAPPRIS P1 TSL 1 (best) BASIC14.66□□□□□ -0.06
PCNAP12004 TOM1L2-205ENST00000478943 2098 ntTSL 2 BASIC14.66□□□□□ -0.06
PCNAP12004 FARS2-202ENST00000324331 1692 ntAPPRIS P1 TSL 1 (best) BASIC14.66□□□□□ -0.06
PCNAP12004 GABPA-202ENST00000400075 4814 ntAPPRIS P1 TSL 1 (best) BASIC14.66□□□□□ -0.06
PCNAP12004 SPPL2A-201ENST00000261854 7372 ntAPPRIS P1 TSL 1 (best) BASIC14.66□□□□□ -0.06
PCNAP12004 AL391825.1-201ENST00000457671 1364 ntBASIC14.66□□□□□ -0.06
PCNAP12004 TM2D3-207ENST00000559107 1353 ntTSL 3 BASIC14.66□□□□□ -0.06
PCNAP12004 ERCC1-201ENST00000013807 1278 ntTSL 1 (best) BASIC14.66□□□□□ -0.06
PCNAP12004 LHB-201ENST00000221421 514 ntAPPRIS P1 TSL 1 (best) BASIC14.66□□□□□ -0.06
PCNAP12004 KCNK7-201ENST00000340313 1298 ntAPPRIS P1 TSL 1 (best) BASIC14.66□□□□□ -0.06
PCNAP12004 ACTA1-201ENST00000366683 1122 ntTSL 5 BASIC14.66□□□□□ -0.06
PCNAP12004 MRPL55-215ENST00000366742 630 ntAPPRIS P1 TSL 2 BASIC14.66□□□□□ -0.06
PCNAP12004 PRKN-203ENST00000366894 1157 ntTSL 5 BASIC14.66□□□□□ -0.06
PCNAP12004 BEX2-202ENST00000372677 899 ntAPPRIS P1 TSL 1 (best) BASIC14.66□□□□□ -0.06
PCNAP12004 GLIPR1L1-202ENST00000378695 885 ntAPPRIS ALT2 TSL 1 (best) BASIC14.66□□□□□ -0.06
PCNAP12004 DSCR3-204ENST00000399001 821 ntTSL 2 BASIC14.66□□□□□ -0.06
PCNAP12004 AC098850.1-201ENST00000419919 790 ntBASIC14.66□□□□□ -0.06
PCNAP12004 AL161785.3-201ENST00000435157 395 ntTSL 3 BASIC14.66□□□□□ -0.06
PCNAP12004 AC016735.2-201ENST00000438736 569 ntTSL 4 BASIC14.66□□□□□ -0.06
PCNAP12004 AC002472.2-201ENST00000442739 958 ntBASIC14.66□□□□□ -0.06
PCNAP12004 AC097717.1-202ENST00000457577 740 ntTSL 3 BASIC14.66□□□□□ -0.06
PCNAP12004 AJ271736.1-201ENST00000483543 773 ntTSL 5 BASIC14.66□□□□□ -0.06
PCNAP12004 AP001360.1-202ENST00000526934 479 ntTSL 3 BASIC14.66□□□□□ -0.06
PCNAP12004 CHMP4A-204ENST00000530996 967 ntTSL 3 BASIC14.66□□□□□ -0.06
PCNAP12004 AP001107.3-201ENST00000534065 544 ntTSL 4 BASIC14.66□□□□□ -0.06
PCNAP12004 AC092552.1-201ENST00000547243 906 ntBASIC14.66□□□□□ -0.06
PCNAP12004 CDK4-206ENST00000549606 558 ntTSL 2 BASIC14.66□□□□□ -0.06
PCNAP12004 C17orf49-209ENST00000552775 779 ntTSL 5 BASIC14.66□□□□□ -0.06
PCNAP12004 AL359711.2-201ENST00000563105 872 ntBASIC14.66□□□□□ -0.06
PCNAP12004 MIR4745-201ENST00000577608 62 ntBASIC14.66□□□□□ -0.06
PCNAP12004 CHCHD2P3-201ENST00000603038 451 ntBASIC14.66□□□□□ -0.06
PCNAP12004 FOLR3-204ENST00000611028 820 ntAPPRIS P1 TSL 1 (best) BASIC14.66□□□□□ -0.06
PCNAP12004 APOBEC3H-206ENST00000613677 730 ntAPPRIS ALT2 TSL 5 BASIC14.66□□□□□ -0.06
PCNAP12004 NOP16-209ENST00000618911 1087 ntTSL 1 (best) BASIC14.66□□□□□ -0.06
PCNAP12004 SAFB-201ENST00000292123 3042 ntAPPRIS P3 TSL 1 (best) BASIC14.66□□□□□ -0.06
PCNAP12004 KCP-206ENST00000613019 4853 ntAPPRIS P5 TSL 5 BASIC14.66□□□□□ -0.06
Retrieved 100 of 98,524 protein–RNA pairs in 81.5 ms