Protein–RNA interactions for Protein: O43365

HOXA3, Homeobox protein Hox-A3, humanhuman

Predicted RBP Predictions only

Length 443 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HOXA3O43365 TNRC18-203ENST00000399537 10572 ntAPPRIS ALT2 TSL 5 BASIC12.07□□□□□ -0.48
HOXA3O43365 TNRC18-205ENST00000430969 10562 ntAPPRIS P2 TSL 5 BASIC12.07□□□□□ -0.48
HOXA3O43365 LINGO1-204ENST00000561030 2677 ntTSL 1 (best) BASIC12.07□□□□□ -0.48
HOXA3O43365 JRK-203ENST00000571961 2687 ntAPPRIS ALT2 TSL 1 (best) BASIC12.07□□□□□ -0.48
HOXA3O43365 COL9A1-204ENST00000370496 1372 ntTSL 1 (best) BASIC12.07□□□□□ -0.48
HOXA3O43365 FAM180B-201ENST00000538490 1388 ntAPPRIS P1 TSL 1 (best) BASIC12.07□□□□□ -0.48
HOXA3O43365 PTPRU-204ENST00000428026 5550 ntTSL 1 (best) BASIC12.07□□□□□ -0.48
HOXA3O43365 NTRK3-203ENST00000357724 2980 ntTSL 5 BASIC12.07□□□□□ -0.48
HOXA3O43365 PGA5-201ENST00000312403 1519 ntAPPRIS P1 TSL 1 (best) BASIC12.07□□□□□ -0.48
HOXA3O43365 AC018755.2-201ENST00000599649 1837 ntAPPRIS P1 TSL 1 (best) BASIC12.07□□□□□ -0.48
HOXA3O43365 NCAPH2-201ENST00000299821 1996 ntAPPRIS ALT2 TSL 1 (best) BASIC12.07□□□□□ -0.48
HOXA3O43365 COMP-203ENST00000542601 2707 ntTSL 1 (best) BASIC12.07□□□□□ -0.48
HOXA3O43365 NPNT-201ENST00000305572 3003 ntTSL 1 (best) BASIC12.07□□□□□ -0.48
HOXA3O43365 KCP-203ENST00000610776 5108 ntTSL 5 BASIC12.07□□□□□ -0.48
HOXA3O43365 ADAMTS14-201ENST00000373207 5260 ntAPPRIS ALT2 TSL 1 (best) BASIC12.07□□□□□ -0.48
HOXA3O43365 ASCL1-201ENST00000266744 2472 ntAPPRIS P1 TSL 1 (best) BASIC12.07□□□□□ -0.48
HOXA3O43365 TSPAN5-201ENST00000305798 3365 ntAPPRIS P1 TSL 1 (best) BASIC12.07□□□□□ -0.48
HOXA3O43365 CDR2L-201ENST00000337231 3536 ntAPPRIS P1 TSL 1 (best) BASIC12.07□□□□□ -0.48
HOXA3O43365 CCDC40-202ENST00000374876 2010 ntTSL 1 (best) BASIC12.07□□□□□ -0.48
HOXA3O43365 VLDLR-202ENST00000382099 3240 ntAPPRIS ALT1 TSL 1 (best) BASIC12.07□□□□□ -0.48
HOXA3O43365 LENEP-202ENST00000392487 555 ntAPPRIS P1 BASIC12.07□□□□□ -0.48
HOXA3O43365 DEF8-202ENST00000418391 852 ntTSL 2 BASIC12.07□□□□□ -0.48
HOXA3O43365 GHSR-202ENST00000427970 912 ntBASIC12.07□□□□□ -0.48
HOXA3O43365 NKAIN1P1-201ENST00000435754 582 ntBASIC12.07□□□□□ -0.48
HOXA3O43365 AL157392.3-216ENST00000437446 462 ntTSL 3 BASIC12.07□□□□□ -0.48
HOXA3O43365 AP000320.1-201ENST00000440403 471 ntTSL 3 BASIC12.07□□□□□ -0.48
HOXA3O43365 CHL1-AS2-203ENST00000452919 726 ntTSL 2 BASIC12.07□□□□□ -0.48
HOXA3O43365 CENPBD1P1-203ENST00000479047 569 ntTSL 3 BASIC12.07□□□□□ -0.48
HOXA3O43365 ARMC8-220ENST00000489213 1714 ntTSL 5 BASIC12.07□□□□□ -0.48
HOXA3O43365 MESTP3-201ENST00000503460 968 ntBASIC12.07□□□□□ -0.48
HOXA3O43365 AC005833.2-201ENST00000527518 1249 ntTSL 1 (best) BASIC12.07□□□□□ -0.48
HOXA3O43365 CCKBR-204ENST00000531712 463 ntTSL 1 (best) BASIC12.07□□□□□ -0.48
HOXA3O43365 AC005865.1-202ENST00000543036 641 ntTSL 2 BASIC12.07□□□□□ -0.48
HOXA3O43365 AC110285.1-205ENST00000572301 559 ntTSL 3 BASIC12.07□□□□□ -0.48
HOXA3O43365 AP000229.1-202ENST00000609365 559 ntTSL 4 BASIC12.07□□□□□ -0.48
HOXA3O43365 NEFL-203ENST00000619417 1879 ntTSL 5 BASIC12.07□□□□□ -0.48
HOXA3O43365 ARHGAP23-221ENST00000620417 3663 ntAPPRIS ALT2 TSL 5 BASIC12.07□□□□□ -0.48
HOXA3O43365 POU5F1B-201ENST00000465342 5360 ntAPPRIS P1 TSL 3 BASIC12.07□□□□□ -0.48
HOXA3O43365 GSG1L-203ENST00000447459 4916 ntAPPRIS P3 TSL 2 BASIC12.07□□□□□ -0.48
HOXA3O43365 SRD5A2-201ENST00000622030 4648 ntAPPRIS P1 TSL 1 (best) BASIC12.07□□□□□ -0.48
HOXA3O43365 GRAMD1C-201ENST00000358160 4177 ntAPPRIS P1 TSL 1 (best) BASIC12.07□□□□□ -0.48
HOXA3O43365 UBE3A-224ENST00000635914 9352 ntTSL 5 BASIC12.07□□□□□ -0.48
HOXA3O43365 BCL11A-203ENST00000358510 2697 ntAPPRIS P1 TSL 1 (best) BASIC12.07□□□□□ -0.48
HOXA3O43365 EIF2S2-201ENST00000374980 2656 ntAPPRIS P1 TSL 1 (best) BASIC12.07□□□□□ -0.48
HOXA3O43365 LRRC57-202ENST00000397130 2384 ntAPPRIS P1 TSL 1 (best) BASIC12.07□□□□□ -0.48
HOXA3O43365 ADAM9-206ENST00000481513 2387 ntTSL 2 BASIC12.07□□□□□ -0.48
HOXA3O43365 GLUL-202ENST00000331872 4364 ntAPPRIS P1 TSL 1 (best) BASIC12.07□□□□□ -0.48
HOXA3O43365 LEKR1-209ENST00000491763 1940 ntTSL 1 (best) BASIC12.07□□□□□ -0.48
HOXA3O43365 DKFZP434H168-201ENST00000567381 1905 ntBASIC12.07□□□□□ -0.48
HOXA3O43365 COL26A1-201ENST00000313669 3033 ntAPPRIS P2 TSL 1 (best) BASIC12.07□□□□□ -0.48
HOXA3O43365 NFYC-205ENST00000372654 1455 ntAPPRIS P3 TSL 1 (best) BASIC12.07□□□□□ -0.48
HOXA3O43365 OSTF1-201ENST00000346234 1319 ntAPPRIS P1 TSL 1 (best) BASIC12.07□□□□□ -0.48
HOXA3O43365 NATD1-201ENST00000611551 4931 ntAPPRIS P1 TSL 1 (best) BASIC12.07□□□□□ -0.48
HOXA3O43365 LTBR-201ENST00000228918 2260 ntAPPRIS P3 TSL 1 (best) BASIC12.07□□□□□ -0.48
HOXA3O43365 KATNA1-203ENST00000367411 1984 ntAPPRIS P1 TSL 2 BASIC12.07□□□□□ -0.48
HOXA3O43365 AC020659.1-201ENST00000309874 2900 ntTSL 2 BASIC12.07□□□□□ -0.48
HOXA3O43365 ZNF574-202ENST00000359044 2940 ntAPPRIS P1 TSL 1 (best) BASIC12.07□□□□□ -0.48
HOXA3O43365 MAEL-201ENST00000367870 1831 ntTSL 1 (best) BASIC12.07□□□□□ -0.48
HOXA3O43365 TPD52L2-205ENST00000352482 2339 ntTSL 1 (best) BASIC12.06□□□□□ -0.48
HOXA3O43365 ALG9-201ENST00000398006 2345 ntTSL 1 (best) BASIC12.06□□□□□ -0.48
HOXA3O43365 TPD52L2-210ENST00000615907 2310 ntTSL 4 BASIC12.06□□□□□ -0.48
HOXA3O43365 PHAX-201ENST00000297540 4288 ntAPPRIS P1 TSL 1 (best) BASIC12.06□□□□□ -0.48
HOXA3O43365 HS1BP3-203ENST00000406618 1375 ntTSL 2 BASIC12.06□□□□□ -0.48
HOXA3O43365 TMEM139-201ENST00000359333 2383 ntAPPRIS P1 TSL 1 (best) BASIC12.06□□□□□ -0.48
HOXA3O43365 RPS19-206ENST00000598742 2359 ntAPPRIS P1 TSL 1 (best) BASIC12.06□□□□□ -0.48
HOXA3O43365 MMADHC-203ENST00000428879 1726 ntAPPRIS P1 TSL 2 BASIC12.06□□□□□ -0.48
HOXA3O43365 PCCB-204ENST00000462637 1715 ntAPPRIS ALT2 TSL 3 BASIC12.06□□□□□ -0.48
HOXA3O43365 WWC2-201ENST00000403733 8826 ntAPPRIS P1 TSL 5 BASIC12.06□□□□□ -0.48
HOXA3O43365 SYT17-201ENST00000355377 3081 ntAPPRIS P3 TSL 1 (best) BASIC12.06□□□□□ -0.48
HOXA3O43365 IL9R-201ENST00000244174 1944 ntAPPRIS P3 TSL 1 (best) BASIC12.06□□□□□ -0.48
HOXA3O43365 LSM6-201ENST00000296581 2259 ntAPPRIS P1 TSL 1 (best) BASIC12.06□□□□□ -0.48
HOXA3O43365 MEF2C-AS1-210ENST00000514011 1754 ntTSL 1 (best) BASIC12.06□□□□□ -0.48
HOXA3O43365 KMT2E-202ENST00000311117 6874 ntAPPRIS P1 TSL 1 (best) BASIC12.06□□□□□ -0.48
HOXA3O43365 C9orf24-201ENST00000297623 1151 ntAPPRIS P1 TSL 1 (best) BASIC12.06□□□□□ -0.48
HOXA3O43365 C9orf24-205ENST00000379133 712 ntTSL 1 (best) BASIC12.06□□□□□ -0.48
HOXA3O43365 SMS-201ENST00000379404 1174 ntTSL 3 BASIC12.06□□□□□ -0.48
HOXA3O43365 KNCN-202ENST00000396314 608 ntAPPRIS P3 TSL 4 BASIC12.06□□□□□ -0.48
HOXA3O43365 MRPL23-204ENST00000397297 613 ntTSL 2 BASIC12.06□□□□□ -0.48
HOXA3O43365 AC080129.2-201ENST00000418353 430 ntTSL 3 BASIC12.06□□□□□ -0.48
HOXA3O43365 AL354877.1-201ENST00000424412 413 ntBASIC12.06□□□□□ -0.48
HOXA3O43365 MAATS1-203ENST00000463700 939 ntTSL 1 (best) BASIC12.06□□□□□ -0.48
HOXA3O43365 LILRA5-204ENST00000486742 1078 ntAPPRIS ALT2 TSL 1 (best) BASIC12.06□□□□□ -0.48
HOXA3O43365 AC005740.2-201ENST00000511085 419 ntBASIC12.06□□□□□ -0.48
HOXA3O43365 AC005920.3-202ENST00000512717 789 ntTSL 3 BASIC12.06□□□□□ -0.48
HOXA3O43365 AC090502.1-202ENST00000515416 966 ntTSL 1 (best) BASIC12.06□□□□□ -0.48
HOXA3O43365 AL136309.4-201ENST00000527831 640 ntTSL 1 (best) BASIC12.06□□□□□ -0.48
HOXA3O43365 AC126696.1-201ENST00000561567 756 ntTSL 3 BASIC12.06□□□□□ -0.48
HOXA3O43365 FBXL12-204ENST00000586469 544 ntTSL 2 BASIC12.06□□□□□ -0.48
HOXA3O43365 AL137026.1-201ENST00000624407 503 ntTSL 4 BASIC12.06□□□□□ -0.48
HOXA3O43365 LINC00854-216ENST00000636331 718 ntAPPRIS P5 TSL 5 BASIC12.06□□□□□ -0.48
HOXA3O43365 RBM14-201ENST00000310137 2828 ntAPPRIS P1 TSL 1 (best) BASIC12.06□□□□□ -0.48
HOXA3O43365 HAUS3-204ENST00000506763 3166 ntTSL 2 BASIC12.06□□□□□ -0.48
HOXA3O43365 AL359258.3-201ENST00000622910 2331 ntBASIC12.06□□□□□ -0.48
HOXA3O43365 TGFB1I1-202ENST00000394858 1803 ntAPPRIS P3 TSL 1 (best) BASIC12.06□□□□□ -0.48
HOXA3O43365 DNAJC2-203ENST00000379263 2167 ntAPPRIS P1 TSL 1 (best) BASIC12.06□□□□□ -0.48
HOXA3O43365 HNRNPU-226ENST00000640218 6858 ntAPPRIS ALT2 TSL 1 (best) BASIC12.06□□□□□ -0.48
HOXA3O43365 C9orf47-201ENST00000334490 4829 ntAPPRIS P3 TSL 1 (best) BASIC12.06□□□□□ -0.48
HOXA3O43365 ASTN2-201ENST00000288520 2356 ntTSL 1 (best) BASIC12.06□□□□□ -0.48
HOXA3O43365 TRAK1-203ENST00000396175 5033 ntAPPRIS ALT2 TSL 5 BASIC12.06□□□□□ -0.48
HOXA3O43365 CRISPLD2-203ENST00000564567 1651 ntTSL 1 (best) BASIC12.06□□□□□ -0.48
Retrieved 100 of 98,524 protein–RNA pairs in 52 ms