Protein–RNA interactions for Protein: A6NKT7

RGPD3, RanBP2-like and GRIP domain-containing protein 3, humanhuman

Predicted RBP Predictions only

Length 1,758 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
RGPD3A6NKT7 STRA6-205ENST00000432245 1889 ntTSL 1 (best) BASIC18.19■□□□□ 0.5
RGPD3A6NKT7 RAB3IP-204ENST00000378815 2386 ntTSL 2 BASIC18.19■□□□□ 0.5
RGPD3A6NKT7 NCK2-203ENST00000393349 2371 ntAPPRIS P1 TSL 1 (best) BASIC18.19■□□□□ 0.5
RGPD3A6NKT7 AEBP1-206ENST00000450684 2571 ntTSL 2 BASIC18.19■□□□□ 0.5
RGPD3A6NKT7 NKILA-202ENST00000614771 2598 ntBASIC18.19■□□□□ 0.5
RGPD3A6NKT7 SSR4-202ENST00000370085 526 ntTSL 2 BASIC18.19■□□□□ 0.5
RGPD3A6NKT7 SFMBT2-202ENST00000379711 692 ntTSL 5 BASIC18.19■□□□□ 0.5
RGPD3A6NKT7 AC006328.1-201ENST00000437571 379 ntBASIC18.19■□□□□ 0.5
RGPD3A6NKT7 AL773545.2-201ENST00000442149 472 ntBASIC18.19■□□□□ 0.5
RGPD3A6NKT7 AC133141.1-201ENST00000443015 339 ntBASIC18.19■□□□□ 0.5
RGPD3A6NKT7 SOX2-OT-209ENST00000485035 561 ntTSL 4 BASIC18.19■□□□□ 0.5
RGPD3A6NKT7 AC137579.2-201ENST00000517714 551 ntTSL 4 BASIC18.19■□□□□ 0.5
RGPD3A6NKT7 ACY3-202ENST00000529256 933 ntTSL 3 BASIC18.19■□□□□ 0.5
RGPD3A6NKT7 SLC25A3-215ENST00000551265 580 ntTSL 4 BASIC18.19■□□□□ 0.5
RGPD3A6NKT7 SPAG5-AS1-204ENST00000556050 871 ntTSL 2 BASIC18.19■□□□□ 0.5
RGPD3A6NKT7 AC091304.3-201ENST00000566500 716 ntBASIC18.19■□□□□ 0.5
RGPD3A6NKT7 DHPS-207ENST00000594424 1172 ntTSL 3 BASIC18.19■□□□□ 0.5
RGPD3A6NKT7 SOX2-OT-222ENST00000595084 853 ntTSL 5 BASIC18.19■□□□□ 0.5
RGPD3A6NKT7 SOX2-OT-232ENST00000600386 792 ntTSL 5 BASIC18.19■□□□□ 0.5
RGPD3A6NKT7 AL450487.2-201ENST00000615934 407 ntBASIC18.19■□□□□ 0.5
RGPD3A6NKT7 ORC6-201ENST00000219097 1628 ntAPPRIS P1 TSL 1 (best) BASIC18.19■□□□□ 0.5
RGPD3A6NKT7 GPN3-203ENST00000543199 1604 ntTSL 5 BASIC18.19■□□□□ 0.5
RGPD3A6NKT7 DIP2A-204ENST00000457905 3044 ntTSL 1 (best) BASIC18.19■□□□□ 0.5
RGPD3A6NKT7 CNOT8-201ENST00000285896 2528 ntAPPRIS P1 TSL 1 (best) BASIC18.19■□□□□ 0.5
RGPD3A6NKT7 SHMT1P1-201ENST00000419974 1312 ntBASIC18.19■□□□□ 0.5
RGPD3A6NKT7 ERP29-202ENST00000455836 1333 ntTSL 2 BASIC18.19■□□□□ 0.5
RGPD3A6NKT7 HNF4A-206ENST00000457232 1339 ntTSL 1 (best) BASIC18.19■□□□□ 0.5
RGPD3A6NKT7 RAP1GDS1-203ENST00000380158 2085 ntTSL 1 (best) BASIC18.18■□□□□ 0.5
RGPD3A6NKT7 UBE2D1-204ENST00000615793 2621 ntTSL 2 BASIC18.18■□□□□ 0.5
RGPD3A6NKT7 SNX6-202ENST00000396526 3398 ntTSL 1 (best) BASIC18.18■□□□□ 0.5
RGPD3A6NKT7 ZNF32-AS3-201ENST00000458063 1932 ntTSL 1 (best) BASIC18.18■□□□□ 0.5
RGPD3A6NKT7 SUPT20HL2-201ENST00000486479 2409 ntBASIC18.18■□□□□ 0.5
RGPD3A6NKT7 JPT2-203ENST00000382711 894 ntTSL 4 BASIC18.18■□□□□ 0.5
RGPD3A6NKT7 HNRNPA1P21-201ENST00000424115 961 ntBASIC18.18■□□□□ 0.5
RGPD3A6NKT7 AC147876.1-201ENST00000504408 322 ntBASIC18.18■□□□□ 0.5
RGPD3A6NKT7 AC011676.3-201ENST00000520606 294 ntTSL 5 BASIC18.18■□□□□ 0.5
RGPD3A6NKT7 AC002996.1-201ENST00000546840 784 ntAPPRIS P1 TSL 5 BASIC18.18■□□□□ 0.5
RGPD3A6NKT7 AC254633.1-201ENST00000606790 345 ntBASIC18.18■□□□□ 0.5
RGPD3A6NKT7 AC113385.2-201ENST00000614465 762 ntBASIC18.18■□□□□ 0.5
RGPD3A6NKT7 CANT1-211ENST00000591773 1669 ntAPPRIS P1 TSL 1 (best) BASIC18.18■□□□□ 0.5
RGPD3A6NKT7 SVOPL-202ENST00000419765 1523 ntAPPRIS P1 TSL 5 BASIC18.18■□□□□ 0.5
RGPD3A6NKT7 GATAD1-201ENST00000287957 3361 ntAPPRIS P1 TSL 1 (best) BASIC18.18■□□□□ 0.5
RGPD3A6NKT7 XKR6-203ENST00000416569 3382 ntAPPRIS P1 TSL 1 (best) BASIC18.18■□□□□ 0.5
RGPD3A6NKT7 JHDM1D-AS1-201ENST00000566699 2380 ntBASIC18.18■□□□□ 0.5
RGPD3A6NKT7 AL589740.1-203ENST00000433637 1984 ntTSL 2 BASIC18.18■□□□□ 0.5
RGPD3A6NKT7 TMPRSS13-203ENST00000524993 1950 ntAPPRIS P3 TSL 1 (best) BASIC18.18■□□□□ 0.5
RGPD3A6NKT7 SLC25A31-201ENST00000281154 1841 ntAPPRIS P1 TSL 1 (best) BASIC18.18■□□□□ 0.5
RGPD3A6NKT7 PDE4C-201ENST00000262805 2472 ntAPPRIS ALT2 TSL 1 (best) BASIC18.18■□□□□ 0.5
RGPD3A6NKT7 IQCA1L-203ENST00000615129 2606 ntAPPRIS P1 TSL 5 BASIC18.17■□□□□ 0.5
RGPD3A6NKT7 PPP4R2-201ENST00000356692 4984 ntAPPRIS P1 TSL 1 (best) BASIC18.17■□□□□ 0.5
RGPD3A6NKT7 IL1F10-201ENST00000341010 1013 ntAPPRIS P1 TSL 1 (best) BASIC18.17■□□□□ 0.5
RGPD3A6NKT7 ACTBP14-201ENST00000411655 1089 ntBASIC18.17■□□□□ 0.5
RGPD3A6NKT7 AC103563.1-201ENST00000429316 123 ntBASIC18.17■□□□□ 0.5
RGPD3A6NKT7 AL162377.1-202ENST00000456688 1181 ntTSL 2 BASIC18.17■□□□□ 0.5
RGPD3A6NKT7 SMUG1-221ENST00000514196 553 ntTSL 4 BASIC18.17■□□□□ 0.5
RGPD3A6NKT7 HDAC2-AS2-213ENST00000520891 603 ntTSL 4 BASIC18.17■□□□□ 0.5
RGPD3A6NKT7 SLC13A2-205ENST00000545060 1276 ntTSL 5 BASIC18.17■□□□□ 0.5
RGPD3A6NKT7 FAM187B2P-201ENST00000577135 713 ntBASIC18.17■□□□□ 0.5
RGPD3A6NKT7 MIR4265-201ENST00000582152 99 ntBASIC18.17■□□□□ 0.5
RGPD3A6NKT7 CYP1B1-AS1-201ENST00000413828 1781 ntTSL 5 BASIC18.17■□□□□ 0.5
RGPD3A6NKT7 GMPR2-204ENST00000420554 1864 ntTSL 1 (best) BASIC18.17■□□□□ 0.5
RGPD3A6NKT7 GMPR2-223ENST00000559836 1893 ntAPPRIS P1 TSL 1 (best) BASIC18.17■□□□□ 0.5
RGPD3A6NKT7 YTHDF3-215ENST00000621957 2387 ntAPPRIS ALT1 TSL 5 BASIC18.17■□□□□ 0.5
RGPD3A6NKT7 PAX6-264ENST00000640125 1375 ntTSL 5 BASIC18.17■□□□□ 0.5
RGPD3A6NKT7 SH3KBP1-201ENST00000379697 1944 ntTSL 5 BASIC18.17■□□□□ 0.5
RGPD3A6NKT7 CNMD-203ENST00000448904 1444 ntAPPRIS ALT1 TSL 1 (best) BASIC18.17■□□□□ 0.5
RGPD3A6NKT7 NKIRAS1-201ENST00000388759 2335 ntAPPRIS P2 TSL 3 BASIC18.17■□□□□ 0.5
RGPD3A6NKT7 ANXA3-202ENST00000503570 1524 ntTSL 5 BASIC18.17■□□□□ 0.5
RGPD3A6NKT7 DNAAF1-201ENST00000378553 2379 ntAPPRIS P1 TSL 1 (best) BASIC18.17■□□□□ 0.5
RGPD3A6NKT7 NCOA5-201ENST00000290231 3220 ntAPPRIS P1 TSL 1 (best) BASIC18.17■□□□□ 0.5
RGPD3A6NKT7 SLCO4A1-202ENST00000370507 2665 ntAPPRIS P1 TSL 1 (best) BASIC18.17■□□□□ 0.5
RGPD3A6NKT7 U3.5-201ENST00000363448 216 ntBASIC18.17■□□□□ 0.5
RGPD3A6NKT7 PMF1-203ENST00000368279 1019 ntTSL 2 BASIC18.17■□□□□ 0.5
RGPD3A6NKT7 RPL18AP16-201ENST00000424057 531 ntBASIC18.17■□□□□ 0.5
RGPD3A6NKT7 PSMB8-AS1-204ENST00000429600 996 ntTSL 2 BASIC18.17■□□□□ 0.5
RGPD3A6NKT7 AC008440.1-201ENST00000455835 439 ntTSL 5 BASIC18.17■□□□□ 0.5
RGPD3A6NKT7 VDAC1P11-201ENST00000458323 852 ntBASIC18.17■□□□□ 0.5
RGPD3A6NKT7 B9D1-206ENST00000461069 923 ntTSL 2 BASIC18.17■□□□□ 0.5
RGPD3A6NKT7 AP000640.1-201ENST00000525337 879 ntTSL 2 BASIC18.17■□□□□ 0.5
RGPD3A6NKT7 KRT8P34-201ENST00000577607 1044 ntBASIC18.17■□□□□ 0.5
RGPD3A6NKT7 AP003900.1-201ENST00000622592 859 ntTSL 3 BASIC18.17■□□□□ 0.5
RGPD3A6NKT7 APBB1-220ENST00000609331 1574 ntTSL 5 BASIC18.17■□□□□ 0.5
RGPD3A6NKT7 LRIT1-201ENST00000372105 2228 ntAPPRIS P1 TSL 1 (best) BASIC18.16■□□□□ 0.5
RGPD3A6NKT7 DENND5A-201ENST00000328194 5031 ntAPPRIS P1 TSL 1 (best) BASIC18.16■□□□□ 0.5
RGPD3A6NKT7 SLC6A9-202ENST00000360584 2330 ntTSL 1 (best) BASIC18.16■□□□□ 0.5
RGPD3A6NKT7 ASAP2-201ENST00000281419 5712 ntAPPRIS P3 TSL 1 (best) BASIC18.16■□□□□ 0.5
RGPD3A6NKT7 WDR6-202ENST00000415265 1883 ntTSL 2 BASIC18.16■□□□□ 0.5
RGPD3A6NKT7 CDK11A-201ENST00000356200 2653 ntTSL 5 BASIC18.16■□□□□ 0.5
RGPD3A6NKT7 XAGE2-201ENST00000286049 618 ntAPPRIS P1 TSL 1 (best) BASIC18.16■□□□□ 0.5
RGPD3A6NKT7 CPSF4L-202ENST00000397671 1275 ntAPPRIS ALT2 TSL 5 BASIC18.16■□□□□ 0.5
RGPD3A6NKT7 FRGCA-201ENST00000424933 422 ntTSL 3 BASIC18.16■□□□□ 0.5
RGPD3A6NKT7 AC008494.1-201ENST00000497612 796 ntBASIC18.16■□□□□ 0.5
RGPD3A6NKT7 AL359219.1-201ENST00000556311 934 ntBASIC18.16■□□□□ 0.5
RGPD3A6NKT7 AC105133.1-201ENST00000559749 742 ntTSL 3 BASIC18.16■□□□□ 0.5
RGPD3A6NKT7 CSAG3-201ENST00000599845 844 ntAPPRIS P5 TSL 1 (best) BASIC18.16■□□□□ 0.5
RGPD3A6NKT7 FXYD3-206ENST00000603524 742 ntTSL 3 BASIC18.16■□□□□ 0.5
RGPD3A6NKT7 AC087072.1-201ENST00000603727 421 ntBASIC18.16■□□□□ 0.5
RGPD3A6NKT7 FXYD3-211ENST00000604804 564 ntTSL 4 BASIC18.16■□□□□ 0.5
RGPD3A6NKT7 AC006207.1-201ENST00000637958 562 ntTSL 5 BASIC18.16■□□□□ 0.5
RGPD3A6NKT7 CSAG2-203ENST00000638741 844 ntAPPRIS P5 TSL 1 (best) BASIC18.16■□□□□ 0.5
Retrieved 100 of 98,524 protein–RNA pairs in 56.1 ms