Protein–RNA interactions for Protein: Q9NXB0

MKS1, Meckel syndrome type 1 protein, humanhuman

Predictions only

Length 559 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
MKS1Q9NXB0 UBASH3A-203ENST00000398367 1733 ntTSL 1 (best) BASIC14.78□□□□□ -0.04
MKS1Q9NXB0 CETP-203ENST00000566128 1733 ntTSL 5 BASIC14.78□□□□□ -0.04
MKS1Q9NXB0 LRP10-201ENST00000359591 6886 ntAPPRIS P2 TSL 1 (best) BASIC14.78□□□□□ -0.04
MKS1Q9NXB0 GABARAP-201ENST00000302386 1634 ntAPPRIS P1 TSL 1 (best) BASIC14.78□□□□□ -0.04
MKS1Q9NXB0 PRAMEF8-202ENST00000614831 1592 ntAPPRIS P1 TSL 5 BASIC14.78□□□□□ -0.04
MKS1Q9NXB0 PRAMEF7-202ENST00000616979 1592 ntAPPRIS P1 TSL 5 BASIC14.78□□□□□ -0.04
MKS1Q9NXB0 RPP40-202ENST00000380051 1483 ntAPPRIS P1 TSL 5 BASIC14.78□□□□□ -0.04
MKS1Q9NXB0 CSF1-201ENST00000329608 4210 ntAPPRIS P1 TSL 1 (best) BASIC14.78□□□□□ -0.04
MKS1Q9NXB0 CLASRP-204ENST00000544944 2769 ntAPPRIS ALT2 TSL 2 BASIC14.78□□□□□ -0.04
MKS1Q9NXB0 TEAD4-203ENST00000397122 1396 ntTSL 1 (best) BASIC14.78□□□□□ -0.04
MKS1Q9NXB0 MRPL37P1-201ENST00000592451 1337 ntBASIC14.78□□□□□ -0.04
MKS1Q9NXB0 MIOX-201ENST00000216075 1130 ntAPPRIS P1 TSL 1 (best) BASIC14.78□□□□□ -0.04
MKS1Q9NXB0 HCST-201ENST00000246551 613 ntAPPRIS P3 TSL 1 (best) BASIC14.78□□□□□ -0.04
MKS1Q9NXB0 AC073349.1-201ENST00000340779 1062 ntTSL 1 (best) BASIC14.78□□□□□ -0.04
MKS1Q9NXB0 ZDHHC12-201ENST00000372663 1129 ntAPPRIS P1 TSL 1 (best) BASIC14.78□□□□□ -0.04
MKS1Q9NXB0 TEX30-203ENST00000376022 828 ntTSL 2 BASIC14.78□□□□□ -0.04
MKS1Q9NXB0 BAD-202ENST00000394531 631 ntTSL 3 BASIC14.78□□□□□ -0.04
MKS1Q9NXB0 ITIH1-202ENST00000405128 1122 ntTSL 2 BASIC14.78□□□□□ -0.04
MKS1Q9NXB0 UPF3AP3-201ENST00000420996 769 ntBASIC14.78□□□□□ -0.04
MKS1Q9NXB0 XXYLT1-AS1-201ENST00000458531 431 ntTSL 3 BASIC14.78□□□□□ -0.04
MKS1Q9NXB0 ST7-OT4-203ENST00000466018 894 ntTSL 5 BASIC14.78□□□□□ -0.04
MKS1Q9NXB0 KRBOX4-206ENST00000478600 730 ntAPPRIS ALT2 TSL 2 BASIC14.78□□□□□ -0.04
MKS1Q9NXB0 KRBOX4-207ENST00000487081 1247 ntAPPRIS ALT2 TSL 1 (best) BASIC14.78□□□□□ -0.04
MKS1Q9NXB0 BAD-207ENST00000544785 525 ntTSL 3 BASIC14.78□□□□□ -0.04
MKS1Q9NXB0 LINC02356-202ENST00000552663 314 ntTSL 3 BASIC14.78□□□□□ -0.04
MKS1Q9NXB0 AC005520.2-201ENST00000556194 573 ntTSL 2 BASIC14.78□□□□□ -0.04
MKS1Q9NXB0 AC027088.1-201ENST00000557966 1117 ntTSL 2 BASIC14.78□□□□□ -0.04
MKS1Q9NXB0 AC092718.3-202ENST00000564536 1032 ntAPPRIS P5 TSL 5 BASIC14.78□□□□□ -0.04
MKS1Q9NXB0 ALDH3B1-203ENST00000612297 1231 ntTSL 3 BASIC14.78□□□□□ -0.04
MKS1Q9NXB0 SHISA6-203ENST00000432116 7518 ntAPPRIS ALT2 TSL 1 (best) BASIC14.78□□□□□ -0.04
MKS1Q9NXB0 KIRREL3-202ENST00000525704 2474 ntAPPRIS ALT2 TSL 1 (best) BASIC14.78□□□□□ -0.04
MKS1Q9NXB0 PPM1M-201ENST00000296487 2429 ntTSL 2 BASIC14.78□□□□□ -0.04
MKS1Q9NXB0 PLEKHO2-202ENST00000616065 3569 ntTSL 1 (best) BASIC14.78□□□□□ -0.04
MKS1Q9NXB0 ITPK1-207ENST00000555495 3035 ntTSL 1 (best) BASIC14.78□□□□□ -0.04
MKS1Q9NXB0 FLJ40288-201ENST00000332558 1998 ntTSL 2 BASIC14.78□□□□□ -0.04
MKS1Q9NXB0 IFNAR2-202ENST00000342136 2899 ntAPPRIS P4 TSL 1 (best) BASIC14.78□□□□□ -0.04
MKS1Q9NXB0 AC073548.1-201ENST00000624088 1882 ntBASIC14.78□□□□□ -0.04
MKS1Q9NXB0 AC007920.1-201ENST00000356133 2674 ntTSL 2 BASIC14.78□□□□□ -0.04
MKS1Q9NXB0 AP003555.1-202ENST00000511013 1755 ntTSL 1 (best) BASIC14.78□□□□□ -0.04
MKS1Q9NXB0 NICN1-201ENST00000273598 2616 ntAPPRIS P1 TSL 1 (best) BASIC14.78□□□□□ -0.04
MKS1Q9NXB0 ZFY-201ENST00000155093 5239 ntAPPRIS P1 TSL 1 (best) BASIC14.78□□□□□ -0.04
MKS1Q9NXB0 DLEU2-201ENST00000235290 1739 ntTSL 5 BASIC14.78□□□□□ -0.04
MKS1Q9NXB0 SLC35C2-203ENST00000372227 2505 ntAPPRIS P1 TSL 1 (best) BASIC14.77□□□□□ -0.04
MKS1Q9NXB0 RFC5-204ENST00000454402 1655 ntAPPRIS P1 TSL 1 (best) BASIC14.77□□□□□ -0.04
MKS1Q9NXB0 DENND1C-202ENST00000543576 2395 ntAPPRIS ALT2 TSL 2 BASIC14.77□□□□□ -0.04
MKS1Q9NXB0 PUF60-209ENST00000527197 1559 ntTSL 5 BASIC14.77□□□□□ -0.04
MKS1Q9NXB0 BPTF-202ENST00000321892 11292 ntAPPRIS ALT2 TSL 5 BASIC14.77□□□□□ -0.04
MKS1Q9NXB0 RARG-203ENST00000425354 2959 ntAPPRIS P3 TSL 1 (best) BASIC14.77□□□□□ -0.04
MKS1Q9NXB0 PLEKHB2-207ENST00000438882 1460 ntTSL 2 BASIC14.77□□□□□ -0.04
MKS1Q9NXB0 PHAX-201ENST00000297540 4288 ntAPPRIS P1 TSL 1 (best) BASIC14.77□□□□□ -0.04
MKS1Q9NXB0 AC100757.3-201ENST00000622361 1406 ntBASIC14.77□□□□□ -0.04
MKS1Q9NXB0 GLB1L2-205ENST00000535456 3365 ntAPPRIS P1 TSL 1 (best) BASIC14.77□□□□□ -0.04
MKS1Q9NXB0 LINC02268-202ENST00000515444 1328 ntTSL 2 BASIC14.77□□□□□ -0.04
MKS1Q9NXB0 RPS28-203ENST00000600659 1326 ntAPPRIS P1 TSL 1 (best) BASIC14.77□□□□□ -0.04
MKS1Q9NXB0 DDX41-208ENST00000507955 2607 ntAPPRIS P1 TSL 1 (best) BASIC14.77□□□□□ -0.04
MKS1Q9NXB0 NUP50-201ENST00000347635 5233 ntAPPRIS P1 TSL 1 (best) BASIC14.77□□□□□ -0.04
MKS1Q9NXB0 NPRL3-212ENST00000620134 3203 ntAPPRIS P1 TSL 1 (best) BASIC14.77□□□□□ -0.04
MKS1Q9NXB0 SIN3B-202ENST00000379803 5129 ntAPPRIS P3 TSL 1 (best) BASIC14.77□□□□□ -0.04
MKS1Q9NXB0 CCDC182-201ENST00000299415 832 ntAPPRIS P1 BASIC14.77□□□□□ -0.05
MKS1Q9NXB0 BRF1-202ENST00000379932 884 ntTSL 5 BASIC14.77□□□□□ -0.05
MKS1Q9NXB0 SCRN1-203ENST00000409570 535 ntTSL 4 BASIC14.77□□□□□ -0.05
MKS1Q9NXB0 AL589987.1-201ENST00000453380 819 ntBASIC14.77□□□□□ -0.05
MKS1Q9NXB0 VDAC1P7-201ENST00000462417 847 ntBASIC14.77□□□□□ -0.05
MKS1Q9NXB0 RPL13AP25-201ENST00000484130 612 ntBASIC14.77□□□□□ -0.05
MKS1Q9NXB0 LINC02437-201ENST00000505053 911 ntTSL 3 BASIC14.77□□□□□ -0.05
MKS1Q9NXB0 EVX1-AS-202ENST00000519050 576 ntTSL 4 BASIC14.77□□□□□ -0.05
MKS1Q9NXB0 FAM118B-206ENST00000529731 1028 ntTSL 5 BASIC14.77□□□□□ -0.05
MKS1Q9NXB0 LYSMD2-204ENST00000560491 1026 ntTSL 3 BASIC14.77□□□□□ -0.05
MKS1Q9NXB0 RARRES2P5-201ENST00000564013 466 ntBASIC14.77□□□□□ -0.05
MKS1Q9NXB0 AL031717.1-201ENST00000569670 565 ntTSL 4 BASIC14.77□□□□□ -0.05
MKS1Q9NXB0 MIF4GD-206ENST00000579119 856 ntTSL 3 BASIC14.77□□□□□ -0.05
MKS1Q9NXB0 PTENP1-AS-201ENST00000627688 873 ntTSL 5 BASIC14.77□□□□□ -0.05
MKS1Q9NXB0 LINC02076-201ENST00000577684 1871 ntTSL 1 (best) BASIC14.77□□□□□ -0.05
MKS1Q9NXB0 NATD1-201ENST00000611551 4931 ntAPPRIS P1 TSL 1 (best) BASIC14.77□□□□□ -0.05
MKS1Q9NXB0 POTEM-201ENST00000547889 1817 ntAPPRIS P1 TSL 1 (best) BASIC14.77□□□□□ -0.05
MKS1Q9NXB0 SPRY1-208ENST00000622283 2352 ntAPPRIS P1 TSL 2 BASIC14.77□□□□□ -0.05
MKS1Q9NXB0 IL3RA-201ENST00000331035 1706 ntAPPRIS P1 TSL 1 (best) BASIC14.77□□□□□ -0.05
MKS1Q9NXB0 MLEC-201ENST00000228506 6626 ntAPPRIS P1 TSL 1 (best) BASIC14.77□□□□□ -0.05
MKS1Q9NXB0 CLN3-201ENST00000333496 1608 ntTSL 5 BASIC14.77□□□□□ -0.05
MKS1Q9NXB0 TP73-213ENST00000604479 1623 ntTSL 5 BASIC14.77□□□□□ -0.05
MKS1Q9NXB0 SFSWAP-201ENST00000261674 3246 ntAPPRIS P3 TSL 1 (best) BASIC14.77□□□□□ -0.05
MKS1Q9NXB0 SLC6A12-207ENST00000536824 2101 ntAPPRIS P1 TSL 1 (best) BASIC14.77□□□□□ -0.05
MKS1Q9NXB0 MLXIPL-205ENST00000429400 3173 ntTSL 1 (best) BASIC14.77□□□□□ -0.05
MKS1Q9NXB0 SLC19A2-201ENST00000236137 3671 ntAPPRIS P1 TSL 1 (best) BASIC14.77□□□□□ -0.05
MKS1Q9NXB0 ZNF77-201ENST00000314531 2002 ntAPPRIS P1 TSL 1 (best) BASIC14.76□□□□□ -0.05
MKS1Q9NXB0 AC011498.7-201ENST00000624986 2027 ntBASIC14.76□□□□□ -0.05
MKS1Q9NXB0 ZFP64-203ENST00000361387 2545 ntAPPRIS P1 TSL 1 (best) BASIC14.76□□□□□ -0.05
MKS1Q9NXB0 LONP1-202ENST00000540670 3002 ntTSL 2 BASIC14.76□□□□□ -0.05
MKS1Q9NXB0 AMZ1-201ENST00000312371 5516 ntAPPRIS P1 TSL 1 (best) BASIC14.76□□□□□ -0.05
MKS1Q9NXB0 NUTM2D-202ENST00000412718 5543 ntAPPRIS ALT2 TSL 5 BASIC14.76□□□□□ -0.05
MKS1Q9NXB0 KLK6-203ENST00000391808 1478 ntTSL 1 (best) BASIC14.76□□□□□ -0.05
MKS1Q9NXB0 BRD2-202ENST00000374831 4807 ntAPPRIS P3 TSL 1 (best) BASIC14.76□□□□□ -0.05
MKS1Q9NXB0 C7orf57-204ENST00000435376 1925 ntAPPRIS ALT2 TSL 1 (best) BASIC14.76□□□□□ -0.05
MKS1Q9NXB0 C7orf57-206ENST00000539619 1927 ntAPPRIS ALT2 TSL 5 BASIC14.76□□□□□ -0.05
MKS1Q9NXB0 PAK4-208ENST00000599386 5735 ntTSL 1 (best) BASIC14.76□□□□□ -0.05
MKS1Q9NXB0 HMGA2-210ENST00000541363 8094 ntAPPRIS ALT1 TSL 1 (best) BASIC14.76□□□□□ -0.05
MKS1Q9NXB0 PPT1-213ENST00000641319 2388 ntBASIC14.76□□□□□ -0.05
MKS1Q9NXB0 ZNF251-201ENST00000292562 2807 ntAPPRIS P1 TSL 2 BASIC14.76□□□□□ -0.05
MKS1Q9NXB0 EGR2-202ENST00000411732 2824 ntTSL 2 BASIC14.76□□□□□ -0.05
MKS1Q9NXB0 ANKRD36BP2-202ENST00000421951 1899 ntTSL 3 BASIC14.76□□□□□ -0.05
Retrieved 100 of 98,524 protein–RNA pairs in 50.2 ms