Protein–RNA interactions for Protein: Q96DZ5

CLIP3, CAP-Gly domain-containing linker protein 3, humanhuman

Predictions only

Length 547 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CLIP3Q96DZ5 BRWD1P1-201ENST00000401091 371 ntBASIC14.59□□□□□ -0.07
CLIP3Q96DZ5 DHDDS-206ENST00000427245 868 ntTSL 5 BASIC14.59□□□□□ -0.07
CLIP3Q96DZ5 AC114812.1-204ENST00000449669 728 ntBASIC14.59□□□□□ -0.07
CLIP3Q96DZ5 SYNPR-202ENST00000450542 1004 ntTSL 1 (best) BASIC14.59□□□□□ -0.07
CLIP3Q96DZ5 SEPT7P9-202ENST00000489259 743 ntTSL 3 BASIC14.59□□□□□ -0.07
CLIP3Q96DZ5 SLC45A2-204ENST00000509381 1040 ntTSL 1 (best) BASIC14.59□□□□□ -0.07
CLIP3Q96DZ5 AC090502.1-201ENST00000549905 748 ntTSL 1 (best) BASIC14.59□□□□□ -0.07
CLIP3Q96DZ5 AC090502.1-204ENST00000551210 469 ntTSL 2 BASIC14.59□□□□□ -0.07
CLIP3Q96DZ5 HIRIP3-204ENST00000564026 988 ntTSL 2 BASIC14.59□□□□□ -0.07
CLIP3Q96DZ5 FBXL12-211ENST00000591009 1005 ntTSL 1 (best) BASIC14.59□□□□□ -0.07
CLIP3Q96DZ5 TMEM179-205ENST00000615704 636 ntTSL 2 BASIC14.59□□□□□ -0.07
CLIP3Q96DZ5 CKMT1A-208ENST00000626814 1073 ntTSL 5 BASIC14.59□□□□□ -0.07
CLIP3Q96DZ5 PRNP-201ENST00000379440 2657 ntAPPRIS P1 TSL 1 (best) BASIC14.59□□□□□ -0.07
CLIP3Q96DZ5 GUCD1-206ENST00000435822 3613 ntAPPRIS ALT1 TSL 1 (best) BASIC14.59□□□□□ -0.07
CLIP3Q96DZ5 LRRC59-203ENST00000576448 1531 ntBASIC14.59□□□□□ -0.07
CLIP3Q96DZ5 Z82170.1-201ENST00000625081 3192 ntBASIC14.59□□□□□ -0.07
CLIP3Q96DZ5 RNF167-211ENST00000575111 1757 ntAPPRIS P3 TSL 1 (best) BASIC14.59□□□□□ -0.07
CLIP3Q96DZ5 SPATA21-201ENST00000335496 2015 ntAPPRIS P2 TSL 1 (best) BASIC14.59□□□□□ -0.07
CLIP3Q96DZ5 CYB561-219ENST00000584031 3200 ntTSL 2 BASIC14.59□□□□□ -0.07
CLIP3Q96DZ5 HEY1-201ENST00000337919 2296 ntAPPRIS ALT1 TSL 1 (best) BASIC14.59□□□□□ -0.07
CLIP3Q96DZ5 POMP-201ENST00000380842 1330 ntAPPRIS P1 TSL 1 (best) BASIC14.59□□□□□ -0.07
CLIP3Q96DZ5 GOPC-203ENST00000535237 4460 ntTSL 1 (best) BASIC14.59□□□□□ -0.07
CLIP3Q96DZ5 PPM1B-205ENST00000409432 3025 ntAPPRIS ALT1 TSL 1 (best) BASIC14.59□□□□□ -0.07
CLIP3Q96DZ5 GCC1-201ENST00000321407 4149 ntAPPRIS P1 TSL 1 (best) BASIC14.59□□□□□ -0.07
CLIP3Q96DZ5 CLEC18B-201ENST00000339953 1865 ntAPPRIS P2 TSL 1 (best) BASIC14.59□□□□□ -0.07
CLIP3Q96DZ5 DOK3-203ENST00000377112 1884 ntTSL 2 BASIC14.59□□□□□ -0.07
CLIP3Q96DZ5 CLEC18C-202ENST00000536907 1865 ntAPPRIS ALT2 TSL 5 BASIC14.59□□□□□ -0.07
CLIP3Q96DZ5 ALDOA-225ENST00000569545 1359 ntAPPRIS P2 TSL 5 BASIC14.59□□□□□ -0.07
CLIP3Q96DZ5 ZFP90-209ENST00000570495 4636 ntAPPRIS P1 TSL 1 (best) BASIC14.59□□□□□ -0.07
CLIP3Q96DZ5 TIMP2-201ENST00000262768 3652 ntAPPRIS P1 TSL 1 (best) BASIC14.59□□□□□ -0.07
CLIP3Q96DZ5 SETD1B-203ENST00000604567 5969 ntAPPRIS ALT2 TSL 5 BASIC14.59□□□□□ -0.07
CLIP3Q96DZ5 RAD51-201ENST00000267868 2449 ntAPPRIS P1 TSL 1 (best) BASIC14.58□□□□□ -0.07
CLIP3Q96DZ5 SELENON-203ENST00000374315 4212 ntAPPRIS ALT2 TSL 5 BASIC14.58□□□□□ -0.07
CLIP3Q96DZ5 JARID2-201ENST00000341776 5755 ntAPPRIS P3 TSL 1 (best) BASIC14.58□□□□□ -0.07
CLIP3Q96DZ5 FAM149B1-201ENST00000242505 5408 ntAPPRIS P1 TSL 5 BASIC14.58□□□□□ -0.07
CLIP3Q96DZ5 TAPBPL-201ENST00000266556 1741 ntAPPRIS P1 TSL 1 (best) BASIC14.58□□□□□ -0.07
CLIP3Q96DZ5 SELENOV-201ENST00000335426 1704 ntAPPRIS P1 TSL 1 (best) BASIC14.58□□□□□ -0.07
CLIP3Q96DZ5 SELENOV-205ENST00000622070 1704 ntTSL 5 BASIC14.58□□□□□ -0.07
CLIP3Q96DZ5 ALPL-204ENST00000374840 2589 ntAPPRIS P3 TSL 1 (best) BASIC14.58□□□□□ -0.08
CLIP3Q96DZ5 ARHGAP9-203ENST00000424809 2569 ntTSL 2 BASIC14.58□□□□□ -0.08
CLIP3Q96DZ5 PLIN4-201ENST00000301286 6353 ntAPPRIS P2 TSL 5 BASIC14.58□□□□□ -0.08
CLIP3Q96DZ5 SLC44A2-201ENST00000335757 3671 ntAPPRIS P1 TSL 1 (best) BASIC14.58□□□□□ -0.08
CLIP3Q96DZ5 C7orf57-203ENST00000430738 2056 ntTSL 5 BASIC14.58□□□□□ -0.08
CLIP3Q96DZ5 DEPDC5-203ENST00000400242 2395 ntTSL 1 (best) BASIC14.58□□□□□ -0.08
CLIP3Q96DZ5 ZNRD1-201ENST00000332435 864 ntAPPRIS P1 TSL 1 (best) BASIC14.58□□□□□ -0.08
CLIP3Q96DZ5 RNU1-114P-201ENST00000365297 166 ntBASIC14.58□□□□□ -0.08
CLIP3Q96DZ5 MS4A13-201ENST00000378185 808 ntTSL 1 (best) BASIC14.58□□□□□ -0.08
CLIP3Q96DZ5 SPEG-202ENST00000396686 1086 ntTSL 3 BASIC14.58□□□□□ -0.08
CLIP3Q96DZ5 CRYAA-202ENST00000398132 826 ntTSL 2 BASIC14.58□□□□□ -0.08
CLIP3Q96DZ5 CYB5R3-203ENST00000402438 1050 ntTSL 5 BASIC14.58□□□□□ -0.08
CLIP3Q96DZ5 AL136988.1-201ENST00000414640 1029 ntTSL 3 BASIC14.58□□□□□ -0.08
CLIP3Q96DZ5 HIST2H2BA-202ENST00000430394 752 ntTSL 1 (best) BASIC14.58□□□□□ -0.08
CLIP3Q96DZ5 SPATA3-204ENST00000433428 856 ntAPPRIS P2 TSL 1 (best) BASIC14.58□□□□□ -0.08
CLIP3Q96DZ5 RFPL4A-201ENST00000434937 1035 ntAPPRIS P1 TSL 5 BASIC14.58□□□□□ -0.08
CLIP3Q96DZ5 HCST-202ENST00000437550 445 ntAPPRIS ALT2 TSL 1 (best) BASIC14.58□□□□□ -0.08
CLIP3Q96DZ5 KLC4-205ENST00000458460 1251 ntTSL 1 (best) BASIC14.58□□□□□ -0.08
CLIP3Q96DZ5 FAM162A-202ENST00000469967 1015 ntTSL 2 BASIC14.58□□□□□ -0.08
CLIP3Q96DZ5 POLR2F-208ENST00000470701 584 ntTSL 3 BASIC14.58□□□□□ -0.08
CLIP3Q96DZ5 KRBOX4-206ENST00000478600 730 ntAPPRIS ALT2 TSL 2 BASIC14.58□□□□□ -0.08
CLIP3Q96DZ5 CLRN2-201ENST00000511148 823 ntAPPRIS P1 TSL 1 (best) BASIC14.58□□□□□ -0.08
CLIP3Q96DZ5 AHRR-211ENST00000515206 462 ntTSL 5 BASIC14.58□□□□□ -0.08
CLIP3Q96DZ5 RNA5SP412-201ENST00000516234 123 ntBASIC14.58□□□□□ -0.08
CLIP3Q96DZ5 LSM1-203ENST00000520755 975 ntTSL 1 (best) BASIC14.58□□□□□ -0.08
CLIP3Q96DZ5 AAMDC-206ENST00000526415 579 ntAPPRIS P1 TSL 2 BASIC14.58□□□□□ -0.08
CLIP3Q96DZ5 AP002992.1-201ENST00000527519 491 ntTSL 3 BASIC14.58□□□□□ -0.08
CLIP3Q96DZ5 AC125603.2-201ENST00000546835 876 ntTSL 3 BASIC14.58□□□□□ -0.08
CLIP3Q96DZ5 SDR39U1-212ENST00000555365 976 ntTSL 3 BASIC14.58□□□□□ -0.08
CLIP3Q96DZ5 IFI27L1-210ENST00000556381 804 ntTSL 5 BASIC14.58□□□□□ -0.08
CLIP3Q96DZ5 LINC02299-201ENST00000556669 430 ntTSL 5 BASIC14.58□□□□□ -0.08
CLIP3Q96DZ5 AC025279.2-201ENST00000569730 653 ntBASIC14.58□□□□□ -0.08
CLIP3Q96DZ5 GNRHR2-203ENST00000581100 1187 ntBASIC14.58□□□□□ -0.08
CLIP3Q96DZ5 ELOF1-208ENST00000591912 899 ntTSL 5 BASIC14.58□□□□□ -0.08
CLIP3Q96DZ5 EGLN2-209ENST00000594140 991 ntTSL 2 BASIC14.58□□□□□ -0.08
CLIP3Q96DZ5 AC010328.2-201ENST00000597698 1111 ntBASIC14.58□□□□□ -0.08
CLIP3Q96DZ5 FP236240.1-204ENST00000624932 712 ntTSL 2 BASIC14.58□□□□□ -0.08
CLIP3Q96DZ5 LINC00592-202ENST00000640420 768 ntTSL 5 BASIC14.58□□□□□ -0.08
CLIP3Q96DZ5 AC004922.1-201ENST00000638617 2430 ntAPPRIS P1 TSL 5 BASIC14.58□□□□□ -0.08
CLIP3Q96DZ5 FAM118B-210ENST00000627851 1862 ntTSL 5 BASIC14.58□□□□□ -0.08
CLIP3Q96DZ5 STAU2-219ENST00000522509 2173 ntTSL 2 BASIC14.58□□□□□ -0.08
CLIP3Q96DZ5 CGB7-203ENST00000597853 3386 ntAPPRIS P1 TSL 2 BASIC14.58□□□□□ -0.08
CLIP3Q96DZ5 BMT2-201ENST00000297145 3981 ntAPPRIS P1 TSL 1 (best) BASIC14.58□□□□□ -0.08
CLIP3Q96DZ5 PIKFYVE-202ENST00000308862 1640 ntTSL 1 (best) BASIC14.58□□□□□ -0.08
CLIP3Q96DZ5 TRMO-203ENST00000375119 1647 ntAPPRIS P1 TSL 1 (best) BASIC14.58□□□□□ -0.08
CLIP3Q96DZ5 POLR1D-212ENST00000630983 1931 ntTSL 5 BASIC14.58□□□□□ -0.08
CLIP3Q96DZ5 SNUPN-206ENST00000564675 1682 ntAPPRIS P1 TSL 5 BASIC14.58□□□□□ -0.08
CLIP3Q96DZ5 AC012531.2-201ENST00000512206 1389 ntTSL 1 (best) BASIC14.58□□□□□ -0.08
CLIP3Q96DZ5 TNRC18-203ENST00000399537 10572 ntAPPRIS ALT2 TSL 5 BASIC14.58□□□□□ -0.08
CLIP3Q96DZ5 TNRC18-205ENST00000430969 10562 ntAPPRIS P2 TSL 5 BASIC14.58□□□□□ -0.08
CLIP3Q96DZ5 SLC35C1-201ENST00000314134 4171 ntAPPRIS P1 TSL 1 (best) BASIC14.58□□□□□ -0.08
CLIP3Q96DZ5 MMADHC-203ENST00000428879 1726 ntAPPRIS P1 TSL 2 BASIC14.58□□□□□ -0.08
CLIP3Q96DZ5 ELP6-201ENST00000296149 1401 ntAPPRIS P1 TSL 1 (best) BASIC14.58□□□□□ -0.08
CLIP3Q96DZ5 DNAJC16-201ENST00000375838 2357 ntTSL 5 BASIC14.58□□□□□ -0.08
CLIP3Q96DZ5 CUX2-201ENST00000261726 6844 ntAPPRIS P1 TSL 1 (best) BASIC14.58□□□□□ -0.08
CLIP3Q96DZ5 GPR153-201ENST00000377893 4082 ntAPPRIS P1 TSL 1 (best) BASIC14.57□□□□□ -0.08
CLIP3Q96DZ5 ZKSCAN7-201ENST00000273320 3477 ntAPPRIS P1 TSL 1 (best) BASIC14.57□□□□□ -0.08
CLIP3Q96DZ5 SLC43A2-201ENST00000301335 8136 ntAPPRIS P1 TSL 1 (best) BASIC14.57□□□□□ -0.08
CLIP3Q96DZ5 ELOF1-203ENST00000586683 2154 ntTSL 2 BASIC14.57□□□□□ -0.08
CLIP3Q96DZ5 KAT8-201ENST00000219797 1525 ntAPPRIS P1 TSL 1 (best) BASIC14.57□□□□□ -0.08
CLIP3Q96DZ5 MARVELD3-201ENST00000268485 2912 ntAPPRIS P3 TSL 1 (best) BASIC14.57□□□□□ -0.08
CLIP3Q96DZ5 MARK3-202ENST00000303622 3283 ntAPPRIS P3 TSL 1 (best) BASIC14.57□□□□□ -0.08
Retrieved 100 of 98,524 protein–RNA pairs in 68.7 ms