Protein–RNA interactions for Protein: Q8TF72

SHROOM3, Protein Shroom3, humanhuman

Predictions only

Length 1,996 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SHROOM3Q8TF72 AGER-203ENST00000375065 665 ntTSL 2 BASIC15.22■□□□□ 0.03
SHROOM3Q8TF72 SPATA7-203ENST00000393545 2123 ntAPPRIS P3 TSL 1 (best) BASIC15.22■□□□□ 0.03
SHROOM3Q8TF72 BOLA2P3-201ENST00000404566 256 ntBASIC15.22■□□□□ 0.03
SHROOM3Q8TF72 TPT1P11-201ENST00000458482 498 ntBASIC15.22■□□□□ 0.03
SHROOM3Q8TF72 RNA5SP412-201ENST00000516234 123 ntBASIC15.22■□□□□ 0.03
SHROOM3Q8TF72 NKX3-1-202ENST00000523261 713 ntAPPRIS ALT2 TSL 1 (best) BASIC15.22■□□□□ 0.03
SHROOM3Q8TF72 OVOL1-AS1-202ENST00000532454 494 ntTSL 2 BASIC15.22■□□□□ 0.03
SHROOM3Q8TF72 ACYP1-206ENST00000555694 565 ntAPPRIS P1 TSL 3 BASIC15.22■□□□□ 0.03
SHROOM3Q8TF72 AC010491.1-202ENST00000567048 528 ntTSL 2 BASIC15.22■□□□□ 0.03
SHROOM3Q8TF72 AC133550.2-201ENST00000567731 544 ntTSL 4 BASIC15.22■□□□□ 0.03
SHROOM3Q8TF72 PPY2P-201ENST00000582808 702 ntBASIC15.22■□□□□ 0.03
SHROOM3Q8TF72 PPY2P-202ENST00000583761 657 ntTSL 1 (best) BASIC15.22■□□□□ 0.03
SHROOM3Q8TF72 AC008736.2-201ENST00000587554 516 ntTSL 2 BASIC15.22■□□□□ 0.03
SHROOM3Q8TF72 AL358472.3-201ENST00000608147 415 ntBASIC15.22■□□□□ 0.03
SHROOM3Q8TF72 ARID1B-222ENST00000637003 1290 ntTSL 5 BASIC15.22■□□□□ 0.03
SHROOM3Q8TF72 AC099795.1-202ENST00000640492 759 ntTSL 5 BASIC15.22■□□□□ 0.03
SHROOM3Q8TF72 DFNA5-201ENST00000342947 2590 ntAPPRIS P1 TSL 1 (best) BASIC15.22■□□□□ 0.03
SHROOM3Q8TF72 TTBK2-208ENST00000622375 6891 ntAPPRIS ALT2 TSL 1 (best) BASIC15.22■□□□□ 0.03
SHROOM3Q8TF72 RABL2B-202ENST00000395590 2380 ntTSL 2 BASIC15.22■□□□□ 0.03
SHROOM3Q8TF72 SLC35A2-204ENST00000376521 3047 ntAPPRIS ALT1 TSL 1 (best) BASIC15.22■□□□□ 0.03
SHROOM3Q8TF72 HARS2-202ENST00000448069 1426 ntTSL 2 BASIC15.22■□□□□ 0.03
SHROOM3Q8TF72 FAM214B-202ENST00000378557 3070 ntAPPRIS P1 TSL 1 (best) BASIC15.22■□□□□ 0.03
SHROOM3Q8TF72 MINPP1-202ENST00000371996 2415 ntAPPRIS P1 TSL 1 (best) BASIC15.22■□□□□ 0.03
SHROOM3Q8TF72 USP25-201ENST00000285679 3973 ntAPPRIS P1 TSL 1 (best) BASIC15.22■□□□□ 0.03
SHROOM3Q8TF72 KCNAB2-212ENST00000458166 1336 ntTSL 2 BASIC15.22■□□□□ 0.03
SHROOM3Q8TF72 THOC6-207ENST00000574549 1300 ntTSL 1 (best) BASIC15.22■□□□□ 0.03
SHROOM3Q8TF72 CUX1-211ENST00000546411 4212 ntAPPRIS ALT2 TSL 5 BASIC15.22■□□□□ 0.03
SHROOM3Q8TF72 NRXN1-209ENST00000405581 5078 ntTSL 1 (best) BASIC15.22■□□□□ 0.03
SHROOM3Q8TF72 PNPLA3-201ENST00000216180 2805 ntAPPRIS P1 TSL 1 (best) BASIC15.22■□□□□ 0.03
SHROOM3Q8TF72 ERN2-202ENST00000457008 3169 ntAPPRIS ALT2 TSL 1 (best) BASIC15.22■□□□□ 0.03
SHROOM3Q8TF72 IGHV3-53-201ENST00000390627 571 ntAPPRIS P1 BASIC15.22■□□□□ 0.03
SHROOM3Q8TF72 MDP1-202ENST00000396833 582 ntTSL 1 (best) BASIC15.22■□□□□ 0.03
SHROOM3Q8TF72 RBM24-203ENST00000425446 1034 ntTSL 3 BASIC15.22■□□□□ 0.03
SHROOM3Q8TF72 SNHG12-210ENST00000483436 682 ntTSL 3 BASIC15.22■□□□□ 0.03
SHROOM3Q8TF72 GCOM2-201ENST00000509133 1104 ntBASIC15.22■□□□□ 0.03
SHROOM3Q8TF72 AC109479.1-201ENST00000519603 624 ntTSL 2 BASIC15.22■□□□□ 0.03
SHROOM3Q8TF72 AC116456.1-201ENST00000526646 815 ntTSL 3 BASIC15.22■□□□□ 0.03
SHROOM3Q8TF72 AP002992.1-201ENST00000527519 491 ntTSL 3 BASIC15.22■□□□□ 0.03
SHROOM3Q8TF72 AP000911.1-202ENST00000532706 543 ntTSL 4 BASIC15.22■□□□□ 0.03
SHROOM3Q8TF72 LINC02299-201ENST00000556669 430 ntTSL 5 BASIC15.22■□□□□ 0.03
SHROOM3Q8TF72 Metazoa_SRP.80-201ENST00000619894 320 ntBASIC15.22■□□□□ 0.03
SHROOM3Q8TF72 AL589740.1-203ENST00000433637 1984 ntTSL 2 BASIC15.22■□□□□ 0.03
SHROOM3Q8TF72 C1orf159-202ENST00000379320 2324 ntAPPRIS ALT2 TSL 2 BASIC15.22■□□□□ 0.03
SHROOM3Q8TF72 ELP6-201ENST00000296149 1401 ntAPPRIS P1 TSL 1 (best) BASIC15.21■□□□□ 0.03
SHROOM3Q8TF72 SIGLEC5-201ENST00000534261 2360 ntAPPRIS P1 TSL 5 BASIC15.21■□□□□ 0.03
SHROOM3Q8TF72 ESRRB-207ENST00000556177 1427 ntAPPRIS P1 TSL 1 (best) BASIC15.21■□□□□ 0.03
SHROOM3Q8TF72 CRISPLD2-203ENST00000564567 1651 ntTSL 1 (best) BASIC15.21■□□□□ 0.03
SHROOM3Q8TF72 VIPAS39-202ENST00000343765 2761 ntAPPRIS P1 TSL 1 (best) BASIC15.21■□□□□ 0.03
SHROOM3Q8TF72 ALDH8A1-204ENST00000367847 1587 ntTSL 2 BASIC15.21■□□□□ 0.03
SHROOM3Q8TF72 SV2A-201ENST00000369145 2903 ntTSL 2 BASIC15.21■□□□□ 0.03
SHROOM3Q8TF72 UBE2J1-201ENST00000435041 4290 ntAPPRIS P1 TSL 1 (best) BASIC15.21■□□□□ 0.03
SHROOM3Q8TF72 E2F6-201ENST00000307236 3317 ntTSL 1 (best) BASIC15.21■□□□□ 0.03
SHROOM3Q8TF72 BLOC1S6-212ENST00000566753 1996 ntTSL 2 BASIC15.21■□□□□ 0.03
SHROOM3Q8TF72 ACSL1-208ENST00000507295 2490 ntTSL 2 BASIC15.21■□□□□ 0.03
SHROOM3Q8TF72 MPPE1-201ENST00000309976 1636 ntTSL 1 (best) BASIC15.21■□□□□ 0.03
SHROOM3Q8TF72 ADD1-204ENST00000398123 2361 ntTSL 1 (best) BASIC15.21■□□□□ 0.03
SHROOM3Q8TF72 RHOH-218ENST00000613272 1865 ntAPPRIS P1 TSL 3 BASIC15.21■□□□□ 0.03
SHROOM3Q8TF72 SHBG-202ENST00000380450 1271 ntAPPRIS P3 TSL 1 (best) BASIC15.21■□□□□ 0.03
SHROOM3Q8TF72 PEMT-203ENST00000395782 895 ntAPPRIS P1 TSL 1 (best) BASIC15.21■□□□□ 0.03
SHROOM3Q8TF72 AL136309.1-201ENST00000403917 691 ntBASIC15.21■□□□□ 0.03
SHROOM3Q8TF72 LARGE-AS1-202ENST00000424291 1065 ntTSL 1 (best) BASIC15.21■□□□□ 0.03
SHROOM3Q8TF72 SYNPR-202ENST00000450542 1004 ntTSL 1 (best) BASIC15.21■□□□□ 0.03
SHROOM3Q8TF72 RNA5SP423-201ENST00000517127 109 ntBASIC15.21■□□□□ 0.03
SHROOM3Q8TF72 ETV2-208ENST00000621247 941 ntTSL 5 BASIC15.21■□□□□ 0.03
SHROOM3Q8TF72 OPN4-202ENST00000372071 2401 ntTSL 1 (best) BASIC15.21■□□□□ 0.03
SHROOM3Q8TF72 AC015656.1-201ENST00000624209 3578 ntBASIC15.21■□□□□ 0.03
SHROOM3Q8TF72 TELO2-201ENST00000262319 3314 ntAPPRIS P1 TSL 1 (best) BASIC15.21■□□□□ 0.03
SHROOM3Q8TF72 MAP4K5-201ENST00000013125 4354 ntAPPRIS P1 TSL 1 (best) BASIC15.21■□□□□ 0.03
SHROOM3Q8TF72 CHST11-205ENST00000549260 5696 ntAPPRIS ALT1 TSL 1 (best) BASIC15.21■□□□□ 0.03
SHROOM3Q8TF72 ADGRB2-201ENST00000373655 5400 ntAPPRIS P4 TSL 1 (best) BASIC15.21■□□□□ 0.03
SHROOM3Q8TF72 DLX6-202ENST00000518156 2304 ntAPPRIS P2 TSL 1 (best) BASIC15.21■□□□□ 0.03
SHROOM3Q8TF72 CHPF2-204ENST00000495645 2709 ntTSL 2 BASIC15.21■□□□□ 0.03
SHROOM3Q8TF72 CNOT6-207ENST00000618123 6250 ntAPPRIS P1 TSL 1 (best) BASIC15.21■□□□□ 0.03
SHROOM3Q8TF72 DCAF17-211ENST00000539783 5623 ntAPPRIS ALT2 TSL 5 BASIC15.21■□□□□ 0.03
SHROOM3Q8TF72 MEN1-207ENST00000377326 3150 ntAPPRIS ALT1 TSL 5 BASIC15.21■□□□□ 0.02
SHROOM3Q8TF72 MBP-204ENST00000382582 2281 ntTSL 1 (best) BASIC15.21■□□□□ 0.02
SHROOM3Q8TF72 DMAC2-204ENST00000438807 1454 ntTSL 1 (best) BASIC15.21■□□□□ 0.02
SHROOM3Q8TF72 C4orf50-202ENST00000531445 6860 ntAPPRIS P5 TSL 5 BASIC15.21■□□□□ 0.02
SHROOM3Q8TF72 PTPRN2-201ENST00000389413 4723 ntTSL 1 (best) BASIC15.21■□□□□ 0.02
SHROOM3Q8TF72 AC026748.1-201ENST00000624349 3251 ntBASIC15.21■□□□□ 0.02
SHROOM3Q8TF72 ABHD16A-202ENST00000440843 1906 ntTSL 2 BASIC15.2■□□□□ 0.02
SHROOM3Q8TF72 PSMC3-209ENST00000530912 1390 ntTSL 5 BASIC15.2■□□□□ 0.02
SHROOM3Q8TF72 SYDE2-202ENST00000341460 5512 ntAPPRIS P1 TSL 5 BASIC15.2■□□□□ 0.02
SHROOM3Q8TF72 DACH1-202ENST00000613252 5233 ntAPPRIS P2 TSL 1 (best) BASIC15.2■□□□□ 0.02
SHROOM3Q8TF72 OCEL1-201ENST00000215061 1133 ntAPPRIS P2 TSL 1 (best) BASIC15.2■□□□□ 0.02
SHROOM3Q8TF72 RANBP1-201ENST00000331821 837 ntAPPRIS P3 TSL 1 (best) BASIC15.2■□□□□ 0.02
SHROOM3Q8TF72 NCR3-201ENST00000340027 1042 ntAPPRIS P3 TSL 1 (best) BASIC15.2■□□□□ 0.02
SHROOM3Q8TF72 SS18L1-202ENST00000370848 1238 ntTSL 1 (best) BASIC15.2■□□□□ 0.02
SHROOM3Q8TF72 GPAA1P2-201ENST00000417923 928 ntBASIC15.2■□□□□ 0.02
SHROOM3Q8TF72 AC007405.2-202ENST00000418106 540 ntTSL 4 BASIC15.2■□□□□ 0.02
SHROOM3Q8TF72 RPS24-203ENST00000435275 656 ntAPPRIS ALT1 TSL 2 BASIC15.2■□□□□ 0.02
SHROOM3Q8TF72 AL121845.2-201ENST00000467211 252 ntAPPRIS P1 TSL 3 BASIC15.2■□□□□ 0.02
SHROOM3Q8TF72 RCN1-210ENST00000532942 1191 ntAPPRIS ALT2 TSL 2 BASIC15.2■□□□□ 0.02
SHROOM3Q8TF72 AC079316.1-201ENST00000548397 411 ntBASIC15.2■□□□□ 0.02
SHROOM3Q8TF72 COX14-203ENST00000550487 739 ntAPPRIS P1 TSL 1 (best) BASIC15.2■□□□□ 0.02
SHROOM3Q8TF72 MAP1LC3B2-202ENST00000556529 660 ntAPPRIS P1 TSL 3 BASIC15.2■□□□□ 0.02
SHROOM3Q8TF72 AC027601.2-201ENST00000571085 805 ntTSL 5 BASIC15.2■□□□□ 0.02
SHROOM3Q8TF72 RN7SL560P-201ENST00000577943 264 ntBASIC15.2■□□□□ 0.02
SHROOM3Q8TF72 AC004637.1-201ENST00000586675 482 ntTSL 3 BASIC15.2■□□□□ 0.02
SHROOM3Q8TF72 EGLN2-209ENST00000594140 991 ntTSL 2 BASIC15.2■□□□□ 0.02
Retrieved 100 of 98,524 protein–RNA pairs in 63.6 ms