Protein–RNA interactions for Protein: Q86TS7

LINC00643, Putative UPF0730 protein encoded by LINC00643, humanhuman

Predictions only

Length 51 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LINC00643Q86TS7 AQP2-201ENST00000199280 4174 ntAPPRIS P1 TSL 1 (best) BASIC9.27□□□□□ -0.93
LINC00643Q86TS7 BCL2L11-206ENST00000393256 5086 ntAPPRIS P3 TSL 1 (best) BASIC9.27□□□□□ -0.93
LINC00643Q86TS7 GOLGA8CP-201ENST00000446144 5237 ntBASIC9.27□□□□□ -0.93
LINC00643Q86TS7 GOLGA8F-201ENST00000526619 5237 ntAPPRIS ALT2 TSL 1 (best) BASIC9.27□□□□□ -0.93
LINC00643Q86TS7 PCDHGA8-202ENST00000610569 6480 ntAPPRIS P1 BASIC9.26□□□□□ -0.93
LINC00643Q86TS7 SECISBP2-201ENST00000339901 3320 ntTSL 1 (best) BASIC9.26□□□□□ -0.93
LINC00643Q86TS7 STRA6-206ENST00000449139 2732 ntAPPRIS P1 TSL 5 BASIC9.26□□□□□ -0.93
LINC00643Q86TS7 HPSE2-202ENST00000370549 2121 ntTSL 1 (best) BASIC9.26□□□□□ -0.93
LINC00643Q86TS7 NBPF1-203ENST00000430580 5932 ntAPPRIS P5 TSL 5 BASIC9.26□□□□□ -0.93
LINC00643Q86TS7 FLAD1-206ENST00000368432 1839 ntTSL 1 (best) BASIC9.26□□□□□ -0.93
LINC00643Q86TS7 SEH1L-202ENST00000399892 1846 ntTSL 1 (best) BASIC9.26□□□□□ -0.93
LINC00643Q86TS7 MGRN1-206ENST00000586183 1841 ntAPPRIS ALT2 TSL 5 BASIC9.26□□□□□ -0.93
LINC00643Q86TS7 SLC35F1-201ENST00000360388 4852 ntAPPRIS P2 TSL 1 (best) BASIC9.26□□□□□ -0.93
LINC00643Q86TS7 TBX10-201ENST00000335385 1548 ntAPPRIS P1 TSL 1 (best) BASIC9.26□□□□□ -0.93
LINC00643Q86TS7 AC092028.1-202ENST00000641483 3547 ntBASIC9.26□□□□□ -0.93
LINC00643Q86TS7 AC092028.1-201ENST00000641781 3540 ntBASIC9.26□□□□□ -0.93
LINC00643Q86TS7 EPHA1-201ENST00000275815 3363 ntAPPRIS P1 TSL 1 (best) BASIC9.26□□□□□ -0.93
LINC00643Q86TS7 L3MBTL1-204ENST00000418998 3365 ntAPPRIS ALT2 TSL 2 BASIC9.26□□□□□ -0.93
LINC00643Q86TS7 PDCD6IPP2-206ENST00000566178 3351 ntTSL 5 BASIC9.26□□□□□ -0.93
LINC00643Q86TS7 GALNT6-202ENST00000543196 5207 ntAPPRIS P1 TSL 1 (best) BASIC9.26□□□□□ -0.93
LINC00643Q86TS7 GP1BA-202ENST00000611961 2339 ntAPPRIS ALT2 TSL 5 BASIC9.26□□□□□ -0.93
LINC00643Q86TS7 PRAME-202ENST00000398743 2196 ntAPPRIS P2 TSL 1 (best) BASIC9.26□□□□□ -0.93
LINC00643Q86TS7 FAM215B-201ENST00000458392 2183 ntTSL 1 (best) BASIC9.26□□□□□ -0.93
LINC00643Q86TS7 TBC1D27-201ENST00000261651 4838 ntTSL 2 BASIC9.26□□□□□ -0.93
LINC00643Q86TS7 COL6A2-204ENST00000409416 3430 ntTSL 5 BASIC9.26□□□□□ -0.93
LINC00643Q86TS7 MAGEA2-209ENST00000623806 2025 ntAPPRIS P1 TSL 2 BASIC9.26□□□□□ -0.93
LINC00643Q86TS7 INTS4P1-202ENST00000587624 2985 ntTSL 5 BASIC9.26□□□□□ -0.93
LINC00643Q86TS7 TXNRD1-201ENST00000354940 4082 ntAPPRIS ALT1 TSL 5 BASIC9.26□□□□□ -0.93
LINC00643Q86TS7 PSAP-201ENST00000394934 2830 ntAPPRIS ALT1 TSL 5 BASIC9.26□□□□□ -0.93
LINC00643Q86TS7 EDC3-201ENST00000315127 3763 ntAPPRIS P1 TSL 1 (best) BASIC9.26□□□□□ -0.93
LINC00643Q86TS7 GRAMD1B-215ENST00000638086 2665 ntTSL 5 BASIC9.26□□□□□ -0.93
LINC00643Q86TS7 GNRHR2-201ENST00000312753 1599 ntTSL 1 (best) BASIC9.26□□□□□ -0.93
LINC00643Q86TS7 ARHGAP8-202ENST00000356099 1584 ntAPPRIS P3 TSL 1 (best) BASIC9.26□□□□□ -0.93
LINC00643Q86TS7 PPP1R26P1-201ENST00000474415 3613 ntBASIC9.26□□□□□ -0.93
LINC00643Q86TS7 XRCC3-202ENST00000553264 3018 ntAPPRIS P1 TSL 2 BASIC9.26□□□□□ -0.93
LINC00643Q86TS7 IFI27L2-201ENST00000238609 511 ntAPPRIS P1 TSL 1 (best) BASIC9.26□□□□□ -0.93
LINC00643Q86TS7 HRASLS-201ENST00000264735 1066 ntAPPRIS P1 TSL 1 (best) BASIC9.26□□□□□ -0.93
LINC00643Q86TS7 KCNK7-202ENST00000342202 1283 ntTSL 1 (best) BASIC9.26□□□□□ -0.93
LINC00643Q86TS7 GAD2-202ENST00000376248 680 ntTSL 5 BASIC9.26□□□□□ -0.93
LINC00643Q86TS7 TMEM239-202ENST00000380585 571 ntAPPRIS P1 TSL 1 (best) BASIC9.26□□□□□ -0.93
LINC00643Q86TS7 MPRIP-203ENST00000395806 527 ntTSL 3 BASIC9.26□□□□□ -0.93
LINC00643Q86TS7 KRASP1-201ENST00000407852 552 ntBASIC9.26□□□□□ -0.93
LINC00643Q86TS7 BABAM1-202ENST00000447614 930 ntAPPRIS ALT2 TSL 5 BASIC9.26□□□□□ -0.93
LINC00643Q86TS7 AL357078.1-201ENST00000448344 310 ntTSL 4 BASIC9.26□□□□□ -0.93
LINC00643Q86TS7 ALKBH6-212ENST00000485128 959 ntTSL 5 BASIC9.26□□□□□ -0.93
LINC00643Q86TS7 ZFPL1-203ENST00000525509 478 ntTSL 2 BASIC9.26□□□□□ -0.93
LINC00643Q86TS7 TAGLN-206ENST00000530649 1227 ntAPPRIS P1 TSL 1 (best) BASIC9.26□□□□□ -0.93
LINC00643Q86TS7 GRAMD1B-209ENST00000533341 707 ntTSL 2 BASIC9.26□□□□□ -0.93
LINC00643Q86TS7 SIVA1-203ENST00000535554 1244 ntAPPRIS ALT1 TSL 2 BASIC9.26□□□□□ -0.93
LINC00643Q86TS7 SIVA1-207ENST00000556195 674 ntTSL 3 BASIC9.26□□□□□ -0.93
LINC00643Q86TS7 AP001005.4-202ENST00000575325 560 ntTSL 4 BASIC9.26□□□□□ -0.93
LINC00643Q86TS7 NTF6G-201ENST00000591094 616 ntBASIC9.26□□□□□ -0.93
LINC00643Q86TS7 MTDHP1-201ENST00000605323 784 ntBASIC9.26□□□□□ -0.93
LINC00643Q86TS7 SBDS-205ENST00000617799 953 ntAPPRIS ALT1 TSL 5 BASIC9.26□□□□□ -0.93
LINC00643Q86TS7 ILKAP-212ENST00000622223 1088 ntTSL 1 (best) BASIC9.26□□□□□ -0.93
LINC00643Q86TS7 EML2-AS1-203ENST00000623430 886 ntTSL 1 (best) BASIC9.26□□□□□ -0.93
LINC00643Q86TS7 RNF167-201ENST00000262482 1915 ntAPPRIS P3 TSL 2 BASIC9.26□□□□□ -0.93
LINC00643Q86TS7 ELOVL6-201ENST00000302274 3090 ntAPPRIS P1 TSL 2 BASIC9.26□□□□□ -0.93
LINC00643Q86TS7 CDK2-201ENST00000266970 2296 ntAPPRIS P1 TSL 1 (best) BASIC9.26□□□□□ -0.93
LINC00643Q86TS7 TSN-201ENST00000389682 3420 ntAPPRIS P1 TSL 1 (best) BASIC9.26□□□□□ -0.93
LINC00643Q86TS7 AL162391.1-201ENST00000419853 2102 ntTSL 1 (best) BASIC9.26□□□□□ -0.93
LINC00643Q86TS7 NAP1L1-201ENST00000261182 4441 ntAPPRIS P1 TSL 1 (best) BASIC9.26□□□□□ -0.93
LINC00643Q86TS7 PAX6-207ENST00000379129 2614 ntAPPRIS P4 TSL 5 BASIC9.26□□□□□ -0.93
LINC00643Q86TS7 MX1-218ENST00000619682 1980 ntTSL 5 BASIC9.26□□□□□ -0.93
LINC00643Q86TS7 JCAD-201ENST00000375377 9265 ntAPPRIS P1 TSL 5 BASIC9.26□□□□□ -0.93
LINC00643Q86TS7 PRRG1-203ENST00000463135 1663 ntTSL 2 BASIC9.26□□□□□ -0.93
LINC00643Q86TS7 ST6GAL2-201ENST00000361686 6857 ntAPPRIS P1 TSL 1 (best) BASIC9.26□□□□□ -0.93
LINC00643Q86TS7 CCT4-201ENST00000394440 2520 ntAPPRIS P1 TSL 1 (best) BASIC9.26□□□□□ -0.93
LINC00643Q86TS7 SPCS2-209ENST00000610881 2711 ntAPPRIS ALT2 TSL 5 BASIC9.25□□□□□ -0.93
LINC00643Q86TS7 NEK2-201ENST00000366998 1865 ntTSL 1 (best) BASIC9.25□□□□□ -0.93
LINC00643Q86TS7 MADD-209ENST00000406482 5614 ntAPPRIS ALT2 TSL 1 (best) BASIC9.25□□□□□ -0.93
LINC00643Q86TS7 PARN-203ENST00000437198 3078 ntAPPRIS P1 TSL 1 (best) BASIC9.25□□□□□ -0.93
LINC00643Q86TS7 NTM-206ENST00000427481 2583 ntTSL 5 BASIC9.25□□□□□ -0.93
LINC00643Q86TS7 PPP6R2-209ENST00000612753 4104 ntAPPRIS ALT2 TSL 2 BASIC9.25□□□□□ -0.93
LINC00643Q86TS7 PLOD2-209ENST00000494950 2908 ntTSL 2 BASIC9.25□□□□□ -0.93
LINC00643Q86TS7 IKZF1-203ENST00000346667 5376 ntTSL 5 BASIC9.25□□□□□ -0.93
LINC00643Q86TS7 PGBD1-201ENST00000259883 3100 ntAPPRIS P1 TSL 1 (best) BASIC9.25□□□□□ -0.93
LINC00643Q86TS7 RSPO2-201ENST00000276659 3111 ntAPPRIS P1 TSL 1 (best) BASIC9.25□□□□□ -0.93
LINC00643Q86TS7 SEPT9-203ENST00000427177 3821 ntAPPRIS P4 TSL 1 (best) BASIC9.25□□□□□ -0.93
LINC00643Q86TS7 PBX1-203ENST00000420696 6636 ntAPPRIS P3 TSL 1 (best) BASIC9.25□□□□□ -0.93
LINC00643Q86TS7 SLC36A1-201ENST00000243389 5781 ntAPPRIS P1 TSL 1 (best) BASIC9.25□□□□□ -0.93
LINC00643Q86TS7 CCDC187-203ENST00000569961 3158 ntAPPRIS P2 TSL 1 (best) BASIC9.25□□□□□ -0.93
LINC00643Q86TS7 ZNF473-203ENST00000445728 2833 ntAPPRIS ALT2 TSL 2 BASIC9.25□□□□□ -0.93
LINC00643Q86TS7 NEK4-207ENST00000535191 2452 ntTSL 2 BASIC9.25□□□□□ -0.93
LINC00643Q86TS7 SLC6A12-207ENST00000536824 2101 ntAPPRIS P1 TSL 1 (best) BASIC9.25□□□□□ -0.93
LINC00643Q86TS7 VRK3-217ENST00000599538 2126 ntAPPRIS P3 TSL 1 (best) BASIC9.25□□□□□ -0.93
LINC00643Q86TS7 PXMP4-203ENST00000409299 5684 ntAPPRIS P1 TSL 1 (best) BASIC9.25□□□□□ -0.93
LINC00643Q86TS7 SIX5-204ENST00000622857 1401 ntTSL 5 BASIC9.25□□□□□ -0.93
LINC00643Q86TS7 PLIN3-201ENST00000221957 2333 ntAPPRIS P3 TSL 1 (best) BASIC9.25□□□□□ -0.93
LINC00643Q86TS7 ZNF502-203ENST00000436624 2314 ntAPPRIS P1 TSL 2 BASIC9.25□□□□□ -0.93
LINC00643Q86TS7 NTN4-203ENST00000538383 1971 ntTSL 2 BASIC9.25□□□□□ -0.93
LINC00643Q86TS7 STX16-202ENST00000355957 4897 ntTSL 2 BASIC9.25□□□□□ -0.93
LINC00643Q86TS7 HK3-201ENST00000292432 3066 ntAPPRIS P1 TSL 1 (best) BASIC9.25□□□□□ -0.93
LINC00643Q86TS7 SPHK2-208ENST00000599029 3085 ntAPPRIS ALT2 TSL 1 (best) BASIC9.25□□□□□ -0.93
LINC00643Q86TS7 FOS-201ENST00000303562 2158 ntAPPRIS P1 TSL 1 (best) BASIC9.25□□□□□ -0.93
LINC00643Q86TS7 AADAT-208ENST00000515480 2193 ntAPPRIS P3 TSL 1 (best) BASIC9.25□□□□□ -0.93
LINC00643Q86TS7 ANKRD44-203ENST00000409153 2724 ntTSL 2 BASIC9.25□□□□□ -0.93
LINC00643Q86TS7 AGAP3-205ENST00000463381 2730 ntTSL 2 BASIC9.25□□□□□ -0.93
LINC00643Q86TS7 SEC14L1-204ENST00000436233 5295 ntAPPRIS P3 TSL 1 (best) BASIC9.25□□□□□ -0.93
LINC00643Q86TS7 GGTLC1-203ENST00000335694 1046 ntAPPRIS P1 TSL 1 (best) BASIC9.25□□□□□ -0.93
Retrieved 100 of 98,524 protein–RNA pairs in 43.2 ms