Protein–RNA interactions for Protein: Q5VIR6

VPS53, Vacuolar protein sorting-associated protein 53 homolog, humanhuman

Predictions only

Length 699 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VPS53Q5VIR6 PDIA3P1-201ENST00000471856 1510 ntBASIC18.11■□□□□ 0.49
VPS53Q5VIR6 C20orf202-201ENST00000400633 1604 ntAPPRIS P1 TSL 1 (best) BASIC18.11■□□□□ 0.49
VPS53Q5VIR6 TNFSF13-201ENST00000338784 1971 ntAPPRIS P3 TSL 1 (best) BASIC18.11■□□□□ 0.49
VPS53Q5VIR6 MLLT3-210ENST00000630269 2040 ntAPPRIS ALT1 TSL 2 BASIC18.11■□□□□ 0.49
VPS53Q5VIR6 LDLRAD4-205ENST00000585931 2118 ntTSL 1 (best) BASIC18.11■□□□□ 0.49
VPS53Q5VIR6 HCK-209ENST00000538448 2215 ntAPPRIS ALT2 TSL 2 BASIC18.11■□□□□ 0.49
VPS53Q5VIR6 TMEM139-201ENST00000359333 2383 ntAPPRIS P1 TSL 1 (best) BASIC18.11■□□□□ 0.49
VPS53Q5VIR6 PRF1-201ENST00000373209 2492 ntAPPRIS P1 TSL 1 (best) BASIC18.11■□□□□ 0.49
VPS53Q5VIR6 IDH2-201ENST00000330062 2694 ntAPPRIS P1 TSL 1 (best) BASIC18.11■□□□□ 0.49
VPS53Q5VIR6 SYTL3-205ENST00000611299 2896 ntAPPRIS ALT1 TSL 5 BASIC18.11■□□□□ 0.49
VPS53Q5VIR6 ARHGAP4-202ENST00000370016 3095 ntAPPRIS ALT2 TSL 5 BASIC18.11■□□□□ 0.49
VPS53Q5VIR6 AC018529.2-202ENST00000611482 3087 ntBASIC18.11■□□□□ 0.49
VPS53Q5VIR6 RBBP8-201ENST00000327155 3288 ntAPPRIS P1 TSL 1 (best) BASIC18.11■□□□□ 0.49
VPS53Q5VIR6 TTC22-202ENST00000371276 3345 ntAPPRIS P1 TSL 5 BASIC18.11■□□□□ 0.49
VPS53Q5VIR6 CADPS2-205ENST00000449022 4073 ntTSL 5 BASIC18.11■□□□□ 0.49
VPS53Q5VIR6 SPON1-201ENST00000576479 4837 ntAPPRIS P1 TSL 1 (best) BASIC18.11■□□□□ 0.49
VPS53Q5VIR6 IRGQ-201ENST00000422989 9685 ntAPPRIS P1 TSL 5 BASIC18.1■□□□□ 0.49
VPS53Q5VIR6 PHLDB2-203ENST00000412622 5996 ntTSL 5 BASIC18.1■□□□□ 0.49
VPS53Q5VIR6 PVR-202ENST00000344956 3166 ntAPPRIS ALT2 TSL 5 BASIC18.1■□□□□ 0.49
VPS53Q5VIR6 VWA7-201ENST00000375688 2881 ntAPPRIS P1 TSL 5 BASIC18.1■□□□□ 0.49
VPS53Q5VIR6 PPFIBP1-216ENST00000545334 2805 ntTSL 2 BASIC18.1■□□□□ 0.49
VPS53Q5VIR6 HTR3E-202ENST00000415389 2139 ntAPPRIS ALT2 TSL 1 (best) BASIC18.1■□□□□ 0.49
VPS53Q5VIR6 AC011455.3-201ENST00000599996 1967 ntAPPRIS P1 TSL 2 BASIC18.1■□□□□ 0.49
VPS53Q5VIR6 PDGFRL-201ENST00000251630 1901 ntAPPRIS P1 TSL 5 BASIC18.1■□□□□ 0.49
VPS53Q5VIR6 WASHC2A-202ENST00000314664 4519 ntAPPRIS ALT2 TSL 1 (best) BASIC18.1■□□□□ 0.49
VPS53Q5VIR6 AC104758.3-201ENST00000563349 1453 ntTSL 1 (best) BASIC18.1■□□□□ 0.49
VPS53Q5VIR6 POLR2I-201ENST00000221859 913 ntAPPRIS P1 TSL 1 (best) BASIC18.1■□□□□ 0.49
VPS53Q5VIR6 CMA1-202ENST00000250378 937 ntAPPRIS P1 TSL 1 (best) BASIC18.1■□□□□ 0.49
VPS53Q5VIR6 GABARAPL2-201ENST00000037243 1002 ntAPPRIS P1 TSL 1 (best) BASIC18.1■□□□□ 0.49
VPS53Q5VIR6 AL121983.1-201ENST00000424181 335 ntTSL 2 BASIC18.1■□□□□ 0.49
VPS53Q5VIR6 AC233976.1-201ENST00000425150 451 ntTSL 3 BASIC18.1■□□□□ 0.49
VPS53Q5VIR6 AL035588.1-201ENST00000438967 408 ntTSL 3 BASIC18.1■□□□□ 0.49
VPS53Q5VIR6 RHOXF1P1-201ENST00000454625 772 ntTSL 3 BASIC18.1■□□□□ 0.49
VPS53Q5VIR6 AC007551.1-201ENST00000457394 519 ntBASIC18.1■□□□□ 0.49
VPS53Q5VIR6 RAB3A-202ENST00000464076 1253 ntTSL 2 BASIC18.1■□□□□ 0.49
VPS53Q5VIR6 AL354710.2-201ENST00000468244 550 ntTSL 4 BASIC18.1■□□□□ 0.49
VPS53Q5VIR6 VASH1-AS1-201ENST00000554058 871 ntTSL 3 BASIC18.1■□□□□ 0.49
VPS53Q5VIR6 ZNF790-AS1-204ENST00000589556 650 ntTSL 2 BASIC18.1■□□□□ 0.49
VPS53Q5VIR6 SPATA21-206ENST00000612240 603 ntTSL 5 BASIC18.1■□□□□ 0.49
VPS53Q5VIR6 FAM171B-202ENST00000612606 940 ntTSL 5 BASIC18.1■□□□□ 0.49
VPS53Q5VIR6 ETV2-208ENST00000621247 941 ntTSL 5 BASIC18.1■□□□□ 0.49
VPS53Q5VIR6 PPP6R1-203ENST00000587283 2953 ntAPPRIS P1 TSL 1 (best) BASIC18.1■□□□□ 0.49
VPS53Q5VIR6 MYO15B-237ENST00000642007 4893 ntBASIC18.1■□□□□ 0.49
VPS53Q5VIR6 CYP4F11-202ENST00000326742 2877 ntTSL 1 (best) BASIC18.1■□□□□ 0.49
VPS53Q5VIR6 GRK6-203ENST00000393576 2792 ntTSL 5 BASIC18.1■□□□□ 0.49
VPS53Q5VIR6 ARSE-206ENST00000545496 2506 ntTSL 2 BASIC18.1■□□□□ 0.49
VPS53Q5VIR6 MTHFR-210ENST00000641407 2387 ntBASIC18.1■□□□□ 0.49
VPS53Q5VIR6 CCDC116-201ENST00000292779 2260 ntAPPRIS P2 TSL 1 (best) BASIC18.1■□□□□ 0.49
VPS53Q5VIR6 TMEM201-202ENST00000340381 3776 ntAPPRIS P1 TSL 5 BASIC18.1■□□□□ 0.49
VPS53Q5VIR6 SLC43A2-201ENST00000301335 8136 ntAPPRIS P1 TSL 1 (best) BASIC18.09■□□□□ 0.49
VPS53Q5VIR6 PCBP2-202ENST00000359462 1814 ntAPPRIS ALT1 TSL 1 (best) BASIC18.09■□□□□ 0.49
VPS53Q5VIR6 TLL1-206ENST00000513213 1829 ntTSL 1 (best) BASIC18.09■□□□□ 0.49
VPS53Q5VIR6 AC020659.1-201ENST00000309874 2900 ntTSL 2 BASIC18.09■□□□□ 0.49
VPS53Q5VIR6 KCNMA1-202ENST00000286628 6233 ntAPPRIS ALT2 TSL 1 (best) BASIC18.09■□□□□ 0.49
VPS53Q5VIR6 NPHP4-201ENST00000378156 4994 ntAPPRIS P1 TSL 1 (best) BASIC18.09■□□□□ 0.49
VPS53Q5VIR6 SMAD2-202ENST00000356825 10445 ntTSL 1 (best) BASIC18.09■□□□□ 0.49
VPS53Q5VIR6 OSBPL5-210ENST00000525498 2733 ntTSL 2 BASIC18.09■□□□□ 0.49
VPS53Q5VIR6 HAP1-204ENST00000393939 5683 ntTSL 1 (best) BASIC18.09■□□□□ 0.49
VPS53Q5VIR6 LRP8-201ENST00000306052 7648 ntAPPRIS P3 TSL 1 (best) BASIC18.09■□□□□ 0.49
VPS53Q5VIR6 AC007686.3-201ENST00000619017 3487 ntBASIC18.09■□□□□ 0.49
VPS53Q5VIR6 TCF7-218ENST00000520958 1408 ntTSL 2 BASIC18.09■□□□□ 0.49
VPS53Q5VIR6 MIF4GD-208ENST00000579297 1419 ntTSL 2 BASIC18.09■□□□□ 0.49
VPS53Q5VIR6 PNMA3-202ENST00000593810 1432 ntAPPRIS P1 BASIC18.09■□□□□ 0.49
VPS53Q5VIR6 RAB41-201ENST00000276066 1071 ntAPPRIS P2 TSL 1 (best) BASIC18.09■□□□□ 0.49
VPS53Q5VIR6 UBE2G2-201ENST00000330942 721 ntTSL 3 BASIC18.09■□□□□ 0.49
VPS53Q5VIR6 RAB41-202ENST00000374473 1074 ntAPPRIS ALT2 TSL 5 BASIC18.09■□□□□ 0.49
VPS53Q5VIR6 MIR1909-201ENST00000411312 80 ntBASIC18.09■□□□□ 0.49
VPS53Q5VIR6 POM121L8P-201ENST00000417732 1281 ntBASIC18.09■□□□□ 0.49
VPS53Q5VIR6 COPS6-202ENST00000418625 1107 ntAPPRIS ALT2 TSL 5 BASIC18.09■□□□□ 0.49
VPS53Q5VIR6 USB1-202ENST00000423271 1217 ntTSL 2 BASIC18.09■□□□□ 0.49
VPS53Q5VIR6 FAM197Y7-201ENST00000432892 766 ntBASIC18.09■□□□□ 0.49
VPS53Q5VIR6 POM121L9P-203ENST00000441984 1285 ntBASIC18.09■□□□□ 0.49
VPS53Q5VIR6 ACA64.2-201ENST00000459014 129 ntBASIC18.09■□□□□ 0.49
VPS53Q5VIR6 CLRN2-201ENST00000511148 823 ntAPPRIS P1 TSL 1 (best) BASIC18.09■□□□□ 0.49
VPS53Q5VIR6 HIRIP3-204ENST00000564026 988 ntTSL 2 BASIC18.09■□□□□ 0.49
VPS53Q5VIR6 AC133550.2-201ENST00000567731 544 ntTSL 4 BASIC18.09■□□□□ 0.49
VPS53Q5VIR6 C19orf53-206ENST00000593274 491 ntTSL 2 BASIC18.09■□□□□ 0.49
VPS53Q5VIR6 SCGB1C2-201ENST00000595228 478 ntAPPRIS P1 TSL 1 (best) BASIC18.09■□□□□ 0.49
VPS53Q5VIR6 ECM1P1-201ENST00000604092 1279 ntBASIC18.09■□□□□ 0.49
VPS53Q5VIR6 CCL5-202ENST00000605140 1244 ntAPPRIS P1 TSL 5 BASIC18.09■□□□□ 0.49
VPS53Q5VIR6 AC010735.2-201ENST00000607970 584 ntTSL 4 BASIC18.09■□□□□ 0.49
VPS53Q5VIR6 LCN8-205ENST00000612714 638 ntAPPRIS ALT2 TSL 1 (best) BASIC18.09■□□□□ 0.49
VPS53Q5VIR6 NOP2-222ENST00000617555 2017 ntTSL 5 BASIC18.09■□□□□ 0.49
VPS53Q5VIR6 GPRASP1-205ENST00000537097 5980 ntAPPRIS P1 TSL 2 BASIC18.09■□□□□ 0.49
VPS53Q5VIR6 ZNF586-202ENST00000396150 1977 ntTSL 1 (best) BASIC18.09■□□□□ 0.49
VPS53Q5VIR6 EOMES-201ENST00000295743 3386 ntAPPRIS P1 TSL 1 (best) BASIC18.09■□□□□ 0.49
VPS53Q5VIR6 SLC4A3-202ENST00000317151 4069 ntAPPRIS P1 TSL 5 BASIC18.09■□□□□ 0.49
VPS53Q5VIR6 AC026748.1-201ENST00000624349 3251 ntBASIC18.09■□□□□ 0.49
VPS53Q5VIR6 PCK2-203ENST00000545054 2505 ntTSL 2 BASIC18.09■□□□□ 0.49
VPS53Q5VIR6 HEY1-202ENST00000354724 2293 ntAPPRIS P3 TSL 1 (best) BASIC18.09■□□□□ 0.49
VPS53Q5VIR6 AC060234.2-201ENST00000428825 1610 ntTSL 5 BASIC18.09■□□□□ 0.49
VPS53Q5VIR6 XKR5-201ENST00000618742 4893 ntAPPRIS P1 TSL 1 (best) BASIC18.09■□□□□ 0.49
VPS53Q5VIR6 AC005089.1-201ENST00000619486 2241 ntBASIC18.08■□□□□ 0.49
VPS53Q5VIR6 RASGRF2-206ENST00000638442 2842 ntTSL 5 BASIC18.08■□□□□ 0.49
VPS53Q5VIR6 MAP2K6-209ENST00000613873 1509 ntTSL 1 (best) BASIC18.08■□□□□ 0.49
VPS53Q5VIR6 CECR7-202ENST00000441006 2726 ntTSL 1 (best) BASIC18.08■□□□□ 0.49
VPS53Q5VIR6 DMAC2-204ENST00000438807 1454 ntTSL 1 (best) BASIC18.08■□□□□ 0.49
VPS53Q5VIR6 RIPK1-201ENST00000259808 4160 ntAPPRIS P1 TSL 5 BASIC18.08■□□□□ 0.49
VPS53Q5VIR6 PRSS8-201ENST00000317508 1872 ntAPPRIS P1 TSL 1 (best) BASIC18.08■□□□□ 0.49
VPS53Q5VIR6 GPC3-202ENST00000394299 2379 ntTSL 1 (best) BASIC18.08■□□□□ 0.48
Retrieved 100 of 98,524 protein–RNA pairs in 41.3 ms