Protein–RNA interactions for Protein: Q5THJ4

VPS13D, Vacuolar protein sorting-associated protein 13D, humanhuman

Predictions only

Length 4,388 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VPS13DQ5THJ4 AC011247.2-201ENST00000457097 233 ntTSL 4 BASIC9.71□□□□□ -0.85
VPS13DQ5THJ4 AREG-202ENST00000502307 956 ntTSL 5 BASIC9.71□□□□□ -0.85
VPS13DQ5THJ4 SNCAIP-207ENST00000504884 1885 ntTSL 1 (best) BASIC9.71□□□□□ -0.85
VPS13DQ5THJ4 RBM4-207ENST00000506523 654 ntTSL 3 BASIC9.71□□□□□ -0.85
VPS13DQ5THJ4 C11orf1-202ENST00000528125 534 ntTSL 2 BASIC9.71□□□□□ -0.85
VPS13DQ5THJ4 PRB3-202ENST00000538488 1283 ntAPPRIS P5 TSL 5 BASIC9.71□□□□□ -0.85
VPS13DQ5THJ4 AC237221.1-201ENST00000561575 1881 ntTSL 1 (best) BASIC9.71□□□□□ -0.85
VPS13DQ5THJ4 AC138761.6-201ENST00000583997 1423 ntBASIC9.71□□□□□ -0.85
VPS13DQ5THJ4 CYP4F3-203ENST00000586182 2338 ntAPPRIS ALT1 TSL 2 BASIC9.71□□□□□ -0.85
VPS13DQ5THJ4 AC099811.3-201ENST00000586351 425 ntTSL 3 BASIC9.71□□□□□ -0.85
VPS13DQ5THJ4 DIAPH2-202ENST00000355827 3782 ntAPPRIS ALT2 TSL 5 BASIC9.71□□□□□ -0.86
VPS13DQ5THJ4 TLE3-223ENST00000560939 3021 ntTSL 5 BASIC9.71□□□□□ -0.86
VPS13DQ5THJ4 AL589740.1-203ENST00000433637 1984 ntTSL 2 BASIC9.71□□□□□ -0.86
VPS13DQ5THJ4 PSMG2-201ENST00000317615 1686 ntAPPRIS P1 TSL 1 (best) BASIC9.71□□□□□ -0.86
VPS13DQ5THJ4 ATP5A1-201ENST00000282050 1945 ntAPPRIS P1 TSL 5 BASIC9.71□□□□□ -0.86
VPS13DQ5THJ4 RHOG-201ENST00000351018 1319 ntAPPRIS P1 TSL 1 (best) BASIC9.71□□□□□ -0.86
VPS13DQ5THJ4 RHOT1-203ENST00000358365 3297 ntTSL 1 (best) BASIC9.71□□□□□ -0.86
VPS13DQ5THJ4 TBC1D3P5-202ENST00000581469 2513 ntTSL 1 (best) BASIC9.71□□□□□ -0.86
VPS13DQ5THJ4 CDC25C-207ENST00000513970 1968 ntAPPRIS P1 TSL 2 BASIC9.71□□□□□ -0.86
VPS13DQ5THJ4 ADAM9-206ENST00000481513 2387 ntTSL 2 BASIC9.71□□□□□ -0.86
VPS13DQ5THJ4 BCAS2-201ENST00000369541 1299 ntAPPRIS P1 TSL 1 (best) BASIC9.71□□□□□ -0.86
VPS13DQ5THJ4 CSAG1-203ENST00000370291 1037 ntAPPRIS ALT2 TSL 1 (best) BASIC9.71□□□□□ -0.86
VPS13DQ5THJ4 EEF1B2-203ENST00000392222 1098 ntAPPRIS P1 TSL 1 (best) BASIC9.71□□□□□ -0.86
VPS13DQ5THJ4 ANG-202ENST00000397990 742 ntAPPRIS P1 TSL 1 (best) BASIC9.71□□□□□ -0.86
VPS13DQ5THJ4 EEF1DP2-201ENST00000433698 843 ntBASIC9.71□□□□□ -0.86
VPS13DQ5THJ4 AL592301.1-201ENST00000439501 864 ntTSL 3 BASIC9.71□□□□□ -0.86
VPS13DQ5THJ4 AC010285.2-201ENST00000510240 569 ntTSL 4 BASIC9.71□□□□□ -0.86
VPS13DQ5THJ4 FTLP5-201ENST00000586853 534 ntBASIC9.71□□□□□ -0.86
VPS13DQ5THJ4 SERF1B-204ENST00000506542 1666 ntTSL 3 BASIC9.71□□□□□ -0.86
VPS13DQ5THJ4 NBAT1-201ENST00000566912 1940 ntTSL 2 BASIC9.71□□□□□ -0.86
VPS13DQ5THJ4 AC023632.2-201ENST00000523011 1789 ntTSL 2 BASIC9.71□□□□□ -0.86
VPS13DQ5THJ4 MBD1-217ENST00000588937 1761 ntAPPRIS ALT2 TSL 1 (best) BASIC9.71□□□□□ -0.86
VPS13DQ5THJ4 MKRN2-201ENST00000170447 2848 ntAPPRIS P1 TSL 1 (best) BASIC9.71□□□□□ -0.86
VPS13DQ5THJ4 SIDT1-202ENST00000393830 2572 ntTSL 1 (best) BASIC9.71□□□□□ -0.86
VPS13DQ5THJ4 PCDHGB5-202ENST00000621169 2670 ntAPPRIS ALT2 BASIC9.71□□□□□ -0.86
VPS13DQ5THJ4 AC093525.2-201ENST00000564543 1944 ntAPPRIS P1 TSL 2 BASIC9.71□□□□□ -0.86
VPS13DQ5THJ4 RAB37-216ENST00000613645 1653 ntAPPRIS ALT1 TSL 1 (best) BASIC9.71□□□□□ -0.86
VPS13DQ5THJ4 FAM214B-206ENST00000603301 3256 ntAPPRIS P1 TSL 1 (best) BASIC9.71□□□□□ -0.86
VPS13DQ5THJ4 AC021305.1-201ENST00000520656 1514 ntBASIC9.7□□□□□ -0.86
VPS13DQ5THJ4 AC006372.4-201ENST00000624122 1543 ntBASIC9.7□□□□□ -0.86
VPS13DQ5THJ4 NBPF3-205ENST00000454000 2133 ntAPPRIS ALT2 TSL 2 BASIC9.7□□□□□ -0.86
VPS13DQ5THJ4 HOXB-AS3-206ENST00000474040 741 ntTSL 3 BASIC9.7□□□□□ -0.86
VPS13DQ5THJ4 NACA-221ENST00000552540 1074 ntAPPRIS P1 TSL 1 (best) BASIC9.7□□□□□ -0.86
VPS13DQ5THJ4 AL109954.1-202ENST00000564051 2148 ntBASIC9.7□□□□□ -0.86
VPS13DQ5THJ4 CES1P2-201ENST00000566467 1242 ntBASIC9.7□□□□□ -0.86
VPS13DQ5THJ4 AC006116.2-201ENST00000589958 988 ntBASIC9.7□□□□□ -0.86
VPS13DQ5THJ4 NMRK2-202ENST00000593949 869 ntAPPRIS ALT2 TSL 1 (best) BASIC9.7□□□□□ -0.86
VPS13DQ5THJ4 NMRK2-204ENST00000599576 691 ntTSL 3 BASIC9.7□□□□□ -0.86
VPS13DQ5THJ4 ZNF114-204ENST00000595607 2478 ntAPPRIS P1 TSL 1 (best) BASIC9.7□□□□□ -0.86
VPS13DQ5THJ4 FBXO45-202ENST00000440469 3689 ntTSL 2 BASIC9.7□□□□□ -0.86
VPS13DQ5THJ4 VDAC1-201ENST00000265333 1953 ntAPPRIS P1 TSL 2 BASIC9.7□□□□□ -0.86
VPS13DQ5THJ4 PRMT5-204ENST00000397441 2418 ntTSL 2 BASIC9.7□□□□□ -0.86
VPS13DQ5THJ4 SERINC2-206ENST00000536859 2072 ntTSL 2 BASIC9.7□□□□□ -0.86
VPS13DQ5THJ4 GPX3-201ENST00000388825 1636 ntAPPRIS P2 TSL 1 (best) BASIC9.7□□□□□ -0.86
VPS13DQ5THJ4 SDC4-201ENST00000372733 2613 ntAPPRIS P1 TSL 1 (best) BASIC9.7□□□□□ -0.86
VPS13DQ5THJ4 CMTM1-201ENST00000328020 981 ntAPPRIS ALT2 TSL 1 (best) BASIC9.7□□□□□ -0.86
VPS13DQ5THJ4 CMTM1-202ENST00000332695 624 ntAPPRIS ALT2 TSL 1 (best) BASIC9.7□□□□□ -0.86
VPS13DQ5THJ4 CMTM1-205ENST00000379500 1064 ntAPPRIS P4 TSL 1 (best) BASIC9.7□□□□□ -0.86
VPS13DQ5THJ4 APCDD1L-AS1-206ENST00000445984 566 ntTSL 3 BASIC9.7□□□□□ -0.86
VPS13DQ5THJ4 APCDD1L-AS1-208ENST00000448374 546 ntTSL 4 BASIC9.7□□□□□ -0.86
VPS13DQ5THJ4 TIMM17B-204ENST00000465150 964 ntTSL 2 BASIC9.7□□□□□ -0.86
VPS13DQ5THJ4 AC025186.1-201ENST00000478174 870 ntBASIC9.7□□□□□ -0.86
VPS13DQ5THJ4 CMTM1-209ENST00000528324 749 ntAPPRIS ALT2 TSL 1 (best) BASIC9.7□□□□□ -0.86
VPS13DQ5THJ4 CMTM1-217ENST00000533666 493 ntAPPRIS ALT2 TSL 1 (best) BASIC9.7□□□□□ -0.86
VPS13DQ5THJ4 ACTN1-AS1-202ENST00000553961 599 ntTSL 4 BASIC9.7□□□□□ -0.86
VPS13DQ5THJ4 USB1-205ENST00000561743 1135 ntTSL 3 BASIC9.7□□□□□ -0.86
VPS13DQ5THJ4 SLC9A3R2-204ENST00000563587 1037 ntTSL 2 BASIC9.7□□□□□ -0.86
VPS13DQ5THJ4 BRSK1-203ENST00000585418 1104 ntTSL 1 (best) BASIC9.7□□□□□ -0.86
VPS13DQ5THJ4 HMGB1P24-201ENST00000611897 328 ntBASIC9.7□□□□□ -0.86
VPS13DQ5THJ4 AC139713.2-207ENST00000641556 1292 ntBASIC9.7□□□□□ -0.86
VPS13DQ5THJ4 TAF12-201ENST00000263974 1359 ntAPPRIS P1 TSL 1 (best) BASIC9.7□□□□□ -0.86
VPS13DQ5THJ4 AL513315.1-201ENST00000640756 1370 ntTSL 5 BASIC9.7□□□□□ -0.86
VPS13DQ5THJ4 F2-201ENST00000311907 2023 ntAPPRIS P1 TSL 1 (best) BASIC9.7□□□□□ -0.86
VPS13DQ5THJ4 ZNF385A-201ENST00000338010 2331 ntAPPRIS P1 TSL 1 (best) BASIC9.7□□□□□ -0.86
VPS13DQ5THJ4 TRIM45-202ENST00000369461 2415 ntTSL 5 BASIC9.7□□□□□ -0.86
VPS13DQ5THJ4 PNMA1-201ENST00000316836 2590 ntAPPRIS P1 BASIC9.7□□□□□ -0.86
VPS13DQ5THJ4 CCDC32-201ENST00000358005 1704 ntAPPRIS P1 TSL 2 BASIC9.7□□□□□ -0.86
VPS13DQ5THJ4 TMEM209-202ENST00000462753 2322 ntAPPRIS ALT1 TSL 5 BASIC9.7□□□□□ -0.86
VPS13DQ5THJ4 HSPB7-202ENST00000375718 2415 ntTSL 2 BASIC9.7□□□□□ -0.86
VPS13DQ5THJ4 CCHCR1-201ENST00000376266 2625 ntAPPRIS P3 TSL 1 (best) BASIC9.7□□□□□ -0.86
VPS13DQ5THJ4 PARP16-201ENST00000261888 2731 ntAPPRIS P1 TSL 1 (best) BASIC9.7□□□□□ -0.86
VPS13DQ5THJ4 TMEM14C-201ENST00000229563 1113 ntAPPRIS P1 TSL 1 (best) BASIC9.7□□□□□ -0.86
VPS13DQ5THJ4 FAM3B-201ENST00000357985 1088 ntAPPRIS P3 TSL 1 (best) BASIC9.7□□□□□ -0.86
VPS13DQ5THJ4 ZNRD1-203ENST00000376782 736 ntAPPRIS P1 TSL 2 BASIC9.7□□□□□ -0.86
VPS13DQ5THJ4 FDPSP7-201ENST00000429043 1054 ntBASIC9.7□□□□□ -0.86
VPS13DQ5THJ4 AL161932.2-201ENST00000435436 679 ntBASIC9.7□□□□□ -0.86
VPS13DQ5THJ4 DPY19L2P5-201ENST00000456300 331 ntBASIC9.7□□□□□ -0.86
VPS13DQ5THJ4 AC113347.2-201ENST00000512350 279 ntBASIC9.7□□□□□ -0.86
VPS13DQ5THJ4 AC005154.1-232ENST00000582549 556 ntTSL 5 BASIC9.7□□□□□ -0.86
VPS13DQ5THJ4 AC005274.1-201ENST00000623460 802 ntBASIC9.7□□□□□ -0.86
VPS13DQ5THJ4 UBOX5-AS1-201ENST00000446537 1792 ntTSL 2 BASIC9.7□□□□□ -0.86
VPS13DQ5THJ4 CCDC59-201ENST00000256151 1983 ntAPPRIS P1 TSL 1 (best) BASIC9.7□□□□□ -0.86
VPS13DQ5THJ4 DNM1-208ENST00000486160 3181 ntAPPRIS ALT1 TSL 1 (best) BASIC9.7□□□□□ -0.86
VPS13DQ5THJ4 CRK-202ENST00000398970 3675 ntTSL 1 (best) BASIC9.7□□□□□ -0.86
VPS13DQ5THJ4 SYNGR2-207ENST00000590201 2239 ntTSL 5 BASIC9.7□□□□□ -0.86
VPS13DQ5THJ4 RARS2-201ENST00000369536 1818 ntAPPRIS P1 TSL 1 (best) BASIC9.7□□□□□ -0.86
VPS13DQ5THJ4 MKRN2-202ENST00000411987 1436 ntTSL 2 BASIC9.7□□□□□ -0.86
VPS13DQ5THJ4 TRIM46-211ENST00000611379 3082 ntTSL 1 (best) BASIC9.7□□□□□ -0.86
VPS13DQ5THJ4 ATP6V0A1-204ENST00000537728 2774 ntTSL 2 BASIC9.7□□□□□ -0.86
VPS13DQ5THJ4 SIN3B-206ENST00000595541 2767 ntTSL 2 BASIC9.7□□□□□ -0.86
Retrieved 100 of 98,524 protein–RNA pairs in 120.2 ms