Protein–RNA interactions for Protein: Q3L8U1

CHD9, Chromodomain-helicase-DNA-binding protein 9, humanhuman

Predictions only

Length 2,897 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CHD9Q3L8U1 CCT7-215ENST00000539919 2031 ntTSL 2 BASIC15.34■□□□□ 0.05
CHD9Q3L8U1 GNG4-202ENST00000366598 1721 ntAPPRIS P1 TSL 1 (best) BASIC15.34■□□□□ 0.05
CHD9Q3L8U1 RNF212-201ENST00000333673 1019 ntAPPRIS ALT2 TSL 2 BASIC15.34■□□□□ 0.05
CHD9Q3L8U1 HIST1H4B-201ENST00000377745 438 ntAPPRIS P1 BASIC15.34■□□□□ 0.05
CHD9Q3L8U1 CST1-202ENST00000398402 655 ntAPPRIS P1 TSL 5 BASIC15.34■□□□□ 0.05
CHD9Q3L8U1 AL009181.1-201ENST00000418471 1085 ntTSL 5 BASIC15.34■□□□□ 0.05
CHD9Q3L8U1 CDK2-203ENST00000440311 1031 ntTSL 2 BASIC15.34■□□□□ 0.05
CHD9Q3L8U1 RPS23-207ENST00000511844 530 ntTSL 2 BASIC15.34■□□□□ 0.05
CHD9Q3L8U1 UBR5-AS1-202ENST00000520820 800 ntTSL 2 BASIC15.34■□□□□ 0.05
CHD9Q3L8U1 YPEL4-209ENST00000534711 889 ntAPPRIS P1 TSL 5 BASIC15.34■□□□□ 0.05
CHD9Q3L8U1 AC023968.2-201ENST00000560593 1049 ntBASIC15.34■□□□□ 0.05
CHD9Q3L8U1 COQ4-204ENST00000608951 781 ntTSL 2 BASIC15.34■□□□□ 0.05
CHD9Q3L8U1 LIMK2-204ENST00000406516 2657 ntTSL 5 BASIC15.34■□□□□ 0.05
CHD9Q3L8U1 TLL1-206ENST00000513213 1829 ntTSL 1 (best) BASIC15.34■□□□□ 0.05
CHD9Q3L8U1 ACTL7B-201ENST00000374667 2379 ntAPPRIS P1 BASIC15.34■□□□□ 0.05
CHD9Q3L8U1 LINC01671-201ENST00000419628 1775 ntTSL 1 (best) BASIC15.34■□□□□ 0.05
CHD9Q3L8U1 HYOU1-218ENST00000614668 1569 ntTSL 1 (best) BASIC15.34■□□□□ 0.05
CHD9Q3L8U1 CCHCR1-202ENST00000396263 2490 ntTSL 5 BASIC15.34■□□□□ 0.05
CHD9Q3L8U1 BCCIP-203ENST00000368759 1433 ntTSL 1 (best) BASIC15.34■□□□□ 0.05
CHD9Q3L8U1 ABI2-215ENST00000430418 1676 ntTSL 5 BASIC15.34■□□□□ 0.05
CHD9Q3L8U1 CCHCR1-208ENST00000451521 2587 ntAPPRIS ALT2 TSL 1 (best) BASIC15.34■□□□□ 0.05
CHD9Q3L8U1 SCYL1-208ENST00000527009 2586 ntTSL 5 BASIC15.34■□□□□ 0.05
CHD9Q3L8U1 IGHV5-51-201ENST00000390626 410 ntAPPRIS P1 BASIC15.34■□□□□ 0.05
CHD9Q3L8U1 EFNA4-203ENST00000427683 1052 ntAPPRIS ALT2 TSL 2 BASIC15.34■□□□□ 0.05
CHD9Q3L8U1 LINC02063-201ENST00000503415 566 ntTSL 4 BASIC15.34■□□□□ 0.05
CHD9Q3L8U1 LINC01154-201ENST00000548617 454 ntTSL 3 BASIC15.34■□□□□ 0.05
CHD9Q3L8U1 ZNF286A-212ENST00000580259 527 ntTSL 4 BASIC15.34■□□□□ 0.05
CHD9Q3L8U1 ARFGAP2-202ENST00000426335 2937 ntTSL 2 BASIC15.34■□□□□ 0.05
CHD9Q3L8U1 TLE4-204ENST00000376537 2793 ntTSL 1 (best) BASIC15.34■□□□□ 0.05
CHD9Q3L8U1 UBL4B-201ENST00000334179 1478 ntAPPRIS P1 BASIC15.33■□□□□ 0.05
CHD9Q3L8U1 EGLN2-207ENST00000593726 2821 ntAPPRIS P1 TSL 1 (best) BASIC15.33■□□□□ 0.05
CHD9Q3L8U1 UBTF-202ENST00000343638 4684 ntTSL 1 (best) BASIC15.33■□□□□ 0.05
CHD9Q3L8U1 HEY1-202ENST00000354724 2293 ntAPPRIS P3 TSL 1 (best) BASIC15.33■□□□□ 0.05
CHD9Q3L8U1 INTS11-248ENST00000545578 2263 ntTSL 2 BASIC15.33■□□□□ 0.05
CHD9Q3L8U1 LINC00905-203ENST00000588838 1414 ntTSL 1 (best) BASIC15.33■□□□□ 0.04
CHD9Q3L8U1 YTHDF2-209ENST00000542507 2825 ntAPPRIS P1 TSL 5 BASIC15.33■□□□□ 0.04
CHD9Q3L8U1 RNLS-203ENST00000437752 525 ntTSL 2 BASIC15.33■□□□□ 0.04
CHD9Q3L8U1 NT5C-204ENST00000578337 582 ntTSL 2 BASIC15.33■□□□□ 0.04
CHD9Q3L8U1 ZFP36-201ENST00000594045 690 ntTSL 3 BASIC15.33■□□□□ 0.04
CHD9Q3L8U1 LINC01002-234ENST00000633808 848 ntTSL 5 BASIC15.33■□□□□ 0.04
CHD9Q3L8U1 PEX11B-201ENST00000369306 1740 ntAPPRIS P1 TSL 1 (best) BASIC15.33■□□□□ 0.04
CHD9Q3L8U1 MAPK8IP2-202ENST00000329492 3381 ntAPPRIS P1 TSL 1 (best) BASIC15.33■□□□□ 0.04
CHD9Q3L8U1 NIPA2-204ENST00000398014 3130 ntAPPRIS P1 TSL 5 BASIC15.33■□□□□ 0.04
CHD9Q3L8U1 SMARCD1-202ENST00000394963 3658 ntAPPRIS P1 TSL 1 (best) BASIC15.33■□□□□ 0.04
CHD9Q3L8U1 ELOF1-203ENST00000586683 2154 ntTSL 2 BASIC15.33■□□□□ 0.04
CHD9Q3L8U1 DSCAM-AS1-202ENST00000427451 1640 ntTSL 1 (best) BASIC15.33■□□□□ 0.04
CHD9Q3L8U1 PCDHGB5-202ENST00000621169 2670 ntAPPRIS ALT2 BASIC15.33■□□□□ 0.04
CHD9Q3L8U1 POLR1D-212ENST00000630983 1931 ntTSL 5 BASIC15.33■□□□□ 0.04
CHD9Q3L8U1 NR4A1-209ENST00000548232 1101 ntTSL 1 (best) BASIC15.33■□□□□ 0.04
CHD9Q3L8U1 AC007298.2-201ENST00000551849 862 ntTSL 3 BASIC15.33■□□□□ 0.04
CHD9Q3L8U1 TUBA3C-202ENST00000618094 1386 ntTSL 1 (best) BASIC15.33■□□□□ 0.04
CHD9Q3L8U1 ARPC1A-201ENST00000262942 1565 ntAPPRIS P1 TSL 1 (best) BASIC15.33■□□□□ 0.04
CHD9Q3L8U1 AAMP-202ENST00000420660 1761 ntTSL 2 BASIC15.33■□□□□ 0.04
CHD9Q3L8U1 REPIN1-202ENST00000425389 2876 ntAPPRIS P3 BASIC15.32■□□□□ 0.04
CHD9Q3L8U1 TEX28-203ENST00000617225 1525 ntAPPRIS P1 TSL 1 (best) BASIC15.32■□□□□ 0.04
CHD9Q3L8U1 WIPI1-201ENST00000262139 1832 ntAPPRIS P1 TSL 1 (best) BASIC15.32■□□□□ 0.04
CHD9Q3L8U1 NFATC1-208ENST00000586434 2103 ntAPPRIS ALT2 TSL 1 (best) BASIC15.32■□□□□ 0.04
CHD9Q3L8U1 RAP1GDS1-203ENST00000380158 2085 ntTSL 1 (best) BASIC15.32■□□□□ 0.04
CHD9Q3L8U1 B3GNTL1-201ENST00000320865 1383 ntAPPRIS P1 TSL 1 (best) BASIC15.32■□□□□ 0.04
CHD9Q3L8U1 GNRH2-204ENST00000380347 758 ntAPPRIS ALT2 TSL 5 BASIC15.32■□□□□ 0.04
CHD9Q3L8U1 TMEM216-202ENST00000398979 908 ntTSL 1 (best) BASIC15.32■□□□□ 0.04
CHD9Q3L8U1 AC104961.1-201ENST00000427605 771 ntBASIC15.32■□□□□ 0.04
CHD9Q3L8U1 TIMP1-205ENST00000456754 1095 ntTSL 1 (best) BASIC15.32■□□□□ 0.04
CHD9Q3L8U1 AL132994.1-201ENST00000554098 400 ntBASIC15.32■□□□□ 0.04
CHD9Q3L8U1 AC007376.2-201ENST00000556271 540 ntTSL 3 BASIC15.32■□□□□ 0.04
CHD9Q3L8U1 AC104590.1-201ENST00000560813 648 ntTSL 1 (best) BASIC15.32■□□□□ 0.04
CHD9Q3L8U1 LINC00244-201ENST00000625073 613 ntBASIC15.32■□□□□ 0.04
CHD9Q3L8U1 RARS-210ENST00000626454 177 ntTSL 5 BASIC15.32■□□□□ 0.04
CHD9Q3L8U1 KIFC2-201ENST00000301332 3646 ntAPPRIS P1 TSL 1 (best) BASIC15.32■□□□□ 0.04
CHD9Q3L8U1 AC136621.1-201ENST00000624017 2304 ntBASIC15.32■□□□□ 0.04
CHD9Q3L8U1 PDZD3-212ENST00000531114 2996 ntTSL 2 BASIC15.32■□□□□ 0.04
CHD9Q3L8U1 SLC25A22-201ENST00000320230 2796 ntAPPRIS P1 TSL 1 (best) BASIC15.32■□□□□ 0.04
CHD9Q3L8U1 CPSF7-205ENST00000439958 3524 ntAPPRIS ALT1 TSL 1 (best) BASIC15.32■□□□□ 0.04
CHD9Q3L8U1 TSPAN3-205ENST00000558745 1340 ntTSL 5 BASIC15.32■□□□□ 0.04
CHD9Q3L8U1 EBP-205ENST00000495186 1775 ntAPPRIS P1 TSL 1 (best) BASIC15.32■□□□□ 0.04
CHD9Q3L8U1 DNAAF2-201ENST00000298292 2963 ntAPPRIS P3 TSL 1 (best) BASIC15.32■□□□□ 0.04
CHD9Q3L8U1 CR382285.1-201ENST00000625012 1485 ntTSL 1 (best) BASIC15.32■□□□□ 0.04
CHD9Q3L8U1 NSMF-205ENST00000371474 3571 ntAPPRIS ALT1 TSL 1 (best) BASIC15.32■□□□□ 0.04
CHD9Q3L8U1 NSMF-208ENST00000437259 3577 ntAPPRIS ALT1 TSL 5 BASIC15.32■□□□□ 0.04
CHD9Q3L8U1 C11orf52-201ENST00000278601 1141 ntAPPRIS P1 TSL 1 (best) BASIC15.32■□□□□ 0.04
CHD9Q3L8U1 OR52M2P-201ENST00000414298 959 ntBASIC15.32■□□□□ 0.04
CHD9Q3L8U1 AL157392.3-204ENST00000440878 397 ntTSL 3 BASIC15.32■□□□□ 0.04
CHD9Q3L8U1 MIATNB-206ENST00000444388 918 ntTSL 3 BASIC15.32■□□□□ 0.04
CHD9Q3L8U1 AL135936.1-201ENST00000617956 998 ntTSL 5 BASIC15.32■□□□□ 0.04
CHD9Q3L8U1 DENND1A-202ENST00000373620 3612 ntAPPRIS ALT2 TSL 1 (best) BASIC15.32■□□□□ 0.04
CHD9Q3L8U1 ZNF706-201ENST00000311212 2615 ntAPPRIS P1 TSL 1 (best) BASIC15.32■□□□□ 0.04
CHD9Q3L8U1 ZNF324B-201ENST00000336614 2996 ntAPPRIS P1 TSL 1 (best) BASIC15.32■□□□□ 0.04
CHD9Q3L8U1 EZH2-202ENST00000350995 2477 ntAPPRIS ALT1 TSL 1 (best) BASIC15.32■□□□□ 0.04
CHD9Q3L8U1 TRIM24-202ENST00000415680 3799 ntAPPRIS ALT2 TSL 1 (best) BASIC15.32■□□□□ 0.04
CHD9Q3L8U1 RNF167-201ENST00000262482 1915 ntAPPRIS P3 TSL 2 BASIC15.32■□□□□ 0.04
CHD9Q3L8U1 CORO2B-204ENST00000566799 3566 ntTSL 1 (best) BASIC15.32■□□□□ 0.04
CHD9Q3L8U1 AC009961.1-203ENST00000607836 2520 ntTSL 1 (best) BASIC15.31■□□□□ 0.04
CHD9Q3L8U1 AL353803.2-201ENST00000436510 1846 ntTSL 5 BASIC15.31■□□□□ 0.04
CHD9Q3L8U1 TM4SF19-AS1-203ENST00000452051 1829 ntTSL 2 BASIC15.31■□□□□ 0.04
CHD9Q3L8U1 AC099398.1-201ENST00000567919 2776 ntBASIC15.31■□□□□ 0.04
CHD9Q3L8U1 AC007495.1-201ENST00000501259 2678 ntTSL 1 (best) BASIC15.31■□□□□ 0.04
CHD9Q3L8U1 MRPS11-202ENST00000353598 766 ntTSL 1 (best) BASIC15.31■□□□□ 0.04
CHD9Q3L8U1 MDS2-201ENST00000374555 1029 ntAPPRIS P5 TSL 1 (best) BASIC15.31■□□□□ 0.04
CHD9Q3L8U1 PPP1R7-205ENST00000404405 1009 ntTSL 3 BASIC15.31■□□□□ 0.04
CHD9Q3L8U1 KRT8P2-201ENST00000556193 944 ntBASIC15.31■□□□□ 0.04
Retrieved 100 of 98,524 protein–RNA pairs in 61.3 ms