Protein–RNA interactions for Protein: P57078

RIPK4, Receptor-interacting serine/threonine-protein kinase 4, humanhuman

Predictions only

Length 832 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
RIPK4P57078 BCL11A-203ENST00000358510 2697 ntAPPRIS P1 TSL 1 (best) BASIC19.53■□□□□ 0.72
RIPK4P57078 KITLG-202ENST00000347404 1948 ntTSL 1 (best) BASIC19.53■□□□□ 0.72
RIPK4P57078 SCAF11-204ENST00000395454 1931 ntAPPRIS ALT2 TSL 1 (best) BASIC19.53■□□□□ 0.72
RIPK4P57078 PPP1R26-206ENST00000605660 4502 ntAPPRIS P1 BASIC19.53■□□□□ 0.72
RIPK4P57078 SEC24D-202ENST00000419654 2786 ntTSL 5 BASIC19.53■□□□□ 0.72
RIPK4P57078 APP-208ENST00000439274 2517 ntTSL 1 (best) BASIC19.53■□□□□ 0.72
RIPK4P57078 SLC25A33-201ENST00000302692 3854 ntAPPRIS P1 TSL 1 (best) BASIC19.53■□□□□ 0.72
RIPK4P57078 LINC01285-201ENST00000412422 2289 ntTSL 2 BASIC19.53■□□□□ 0.72
RIPK4P57078 MTHFR-210ENST00000641407 2387 ntBASIC19.53■□□□□ 0.72
RIPK4P57078 LAMTOR4-201ENST00000341942 605 ntAPPRIS P1 TSL 1 (best) BASIC19.53■□□□□ 0.72
RIPK4P57078 RUFY2-202ENST00000342616 983 ntTSL 2 BASIC19.53■□□□□ 0.72
RIPK4P57078 LINC01694-201ENST00000424569 821 ntTSL 5 BASIC19.53■□□□□ 0.72
RIPK4P57078 LINC01762-204ENST00000434879 436 ntTSL 2 BASIC19.53■□□□□ 0.72
RIPK4P57078 MACROD2-AS1-201ENST00000439451 1230 ntTSL 1 (best) BASIC19.53■□□□□ 0.72
RIPK4P57078 ALG3P1-201ENST00000508806 1114 ntBASIC19.53■□□□□ 0.72
RIPK4P57078 C11orf98-201ENST00000524958 654 ntAPPRIS P1 TSL 2 BASIC19.53■□□□□ 0.72
RIPK4P57078 NAPSB-201ENST00000525179 678 ntTSL 3 BASIC19.53■□□□□ 0.72
RIPK4P57078 RPL28-208ENST00000559463 852 ntAPPRIS P1 TSL 1 (best) BASIC19.53■□□□□ 0.72
RIPK4P57078 AL031600.1-201ENST00000563610 570 ntTSL 4 BASIC19.53■□□□□ 0.72
RIPK4P57078 MIR4783-201ENST00000580343 82 ntBASIC19.53■□□□□ 0.72
RIPK4P57078 MLLT10-216ENST00000621220 381 ntTSL 1 (best) BASIC19.53■□□□□ 0.72
RIPK4P57078 STK35-201ENST00000381482 6685 ntAPPRIS P1 TSL 5 BASIC19.53■□□□□ 0.72
RIPK4P57078 FKBP5-201ENST00000357266 3772 ntAPPRIS P1 TSL 1 (best) BASIC19.53■□□□□ 0.72
RIPK4P57078 TMEM230-201ENST00000202834 1472 ntAPPRIS P1 TSL 1 (best) BASIC19.53■□□□□ 0.72
RIPK4P57078 NUP93-201ENST00000308159 2741 ntAPPRIS P1 TSL 1 (best) BASIC19.53■□□□□ 0.72
RIPK4P57078 MAOB-201ENST00000378069 2566 ntAPPRIS P1 TSL 1 (best) BASIC19.52■□□□□ 0.72
RIPK4P57078 SLC4A2-202ENST00000413384 4142 ntAPPRIS P3 TSL 1 (best) BASIC19.52■□□□□ 0.72
RIPK4P57078 SHTN1-201ENST00000260777 5308 ntAPPRIS ALT2 TSL 2 BASIC19.52■□□□□ 0.72
RIPK4P57078 CDC25B-203ENST00000344256 3071 ntTSL 2 BASIC19.52■□□□□ 0.72
RIPK4P57078 MUC1-202ENST00000338684 1107 ntTSL 1 (best) BASIC19.52■□□□□ 0.72
RIPK4P57078 NRSN2-201ENST00000382285 1047 ntAPPRIS P1 TSL 2 BASIC19.52■□□□□ 0.72
RIPK4P57078 AF274855.1-203ENST00000424126 800 ntTSL 3 BASIC19.52■□□□□ 0.72
RIPK4P57078 AL451065.1-201ENST00000428958 238 ntTSL 5 BASIC19.52■□□□□ 0.72
RIPK4P57078 AC123786.1-201ENST00000581626 661 ntTSL 3 BASIC19.52■□□□□ 0.72
RIPK4P57078 AC005695.3-201ENST00000614522 232 ntBASIC19.52■□□□□ 0.72
RIPK4P57078 MIR6869-201ENST00000619434 62 ntBASIC19.52■□□□□ 0.72
RIPK4P57078 ABBA01031663.1-201ENST00000635630 790 ntBASIC19.52■□□□□ 0.72
RIPK4P57078 PRRC2B-210ENST00000638390 1084 ntTSL 1 (best) BASIC19.52■□□□□ 0.72
RIPK4P57078 TPBG-202ENST00000535040 3392 ntAPPRIS P1 TSL 2 BASIC19.52■□□□□ 0.72
RIPK4P57078 BCAR1-202ENST00000393420 2667 ntTSL 5 BASIC19.52■□□□□ 0.72
RIPK4P57078 IRF2BP2-202ENST00000366610 4615 ntAPPRIS ALT2 TSL 1 (best) BASIC19.52■□□□□ 0.72
RIPK4P57078 MAPKAPK3-203ENST00000446044 2988 ntAPPRIS P1 TSL 1 (best) BASIC19.52■□□□□ 0.71
RIPK4P57078 PTGES3L-AARSD1-202ENST00000409103 1670 ntTSL 5 BASIC19.52■□□□□ 0.71
RIPK4P57078 NORAD-201ENST00000565493 5339 ntBASIC19.52■□□□□ 0.71
RIPK4P57078 FURIN-207ENST00000618099 4345 ntAPPRIS P1 TSL 5 BASIC19.52■□□□□ 0.71
RIPK4P57078 KCNG4-202ENST00000568181 2199 ntTSL 1 (best) BASIC19.51■□□□□ 0.71
RIPK4P57078 LBHD1-201ENST00000354588 1320 ntAPPRIS P2 TSL 1 (best) BASIC19.51■□□□□ 0.71
RIPK4P57078 SNAP47-203ENST00000366760 1446 ntAPPRIS ALT2 TSL 2 BASIC19.51■□□□□ 0.71
RIPK4P57078 BRCC3-201ENST00000330045 2496 ntTSL 1 (best) BASIC19.51■□□□□ 0.71
RIPK4P57078 KIFC3-205ENST00000540079 2781 ntTSL 2 BASIC19.51■□□□□ 0.71
RIPK4P57078 AP4M1-201ENST00000359593 1817 ntAPPRIS P1 TSL 1 (best) BASIC19.51■□□□□ 0.71
RIPK4P57078 AP4M1-206ENST00000429084 1836 ntTSL 5 BASIC19.51■□□□□ 0.71
RIPK4P57078 SIGLEC6-202ENST00000346477 1940 ntAPPRIS ALT2 TSL 2 BASIC19.51■□□□□ 0.71
RIPK4P57078 SDHAF2-201ENST00000301761 2033 ntAPPRIS P1 TSL 1 (best) BASIC19.51■□□□□ 0.71
RIPK4P57078 CCT4-201ENST00000394440 2520 ntAPPRIS P1 TSL 1 (best) BASIC19.51■□□□□ 0.71
RIPK4P57078 RBM14-201ENST00000310137 2828 ntAPPRIS P1 TSL 1 (best) BASIC19.51■□□□□ 0.71
RIPK4P57078 COL17A1-202ENST00000369733 5488 ntAPPRIS ALT2 TSL 5 BASIC19.51■□□□□ 0.71
RIPK4P57078 CLRN1-203ENST00000328863 738 ntTSL 1 (best) BASIC19.51■□□□□ 0.71
RIPK4P57078 AC010141.1-201ENST00000411585 623 ntBASIC19.51■□□□□ 0.71
RIPK4P57078 PRKG1-AS1-201ENST00000420193 971 ntTSL 3 BASIC19.51■□□□□ 0.71
RIPK4P57078 LINC01248-201ENST00000458264 468 ntTSL 3 BASIC19.51■□□□□ 0.71
RIPK4P57078 HDAC2-AS2-213ENST00000520891 603 ntTSL 4 BASIC19.51■□□□□ 0.71
RIPK4P57078 AC126696.1-201ENST00000561567 756 ntTSL 3 BASIC19.51■□□□□ 0.71
RIPK4P57078 AC007342.4-201ENST00000566383 584 ntTSL 4 BASIC19.51■□□□□ 0.71
RIPK4P57078 TXNDC17-202ENST00000570330 459 ntTSL 2 BASIC19.51■□□□□ 0.71
RIPK4P57078 LINC02028-216ENST00000609015 732 ntTSL 5 BASIC19.51■□□□□ 0.71
RIPK4P57078 FP565260.5-201ENST00000623188 479 ntTSL 3 BASIC19.51■□□□□ 0.71
RIPK4P57078 TMEM106C-201ENST00000256686 1394 ntTSL 1 (best) BASIC19.51■□□□□ 0.71
RIPK4P57078 ST3GAL3-209ENST00000361400 2195 ntTSL 1 (best) BASIC19.51■□□□□ 0.71
RIPK4P57078 PTPN5-204ENST00000396170 3871 ntTSL 2 BASIC19.51■□□□□ 0.71
RIPK4P57078 NRG1-202ENST00000356819 5931 ntAPPRIS ALT2 TSL 1 (best) BASIC19.51■□□□□ 0.71
RIPK4P57078 ISPD-202ENST00000407010 5524 ntAPPRIS P1 TSL 5 BASIC19.51■□□□□ 0.71
RIPK4P57078 WASHC2C-208ENST00000537517 4417 ntAPPRIS ALT2 TSL 2 BASIC19.51■□□□□ 0.71
RIPK4P57078 DBF4-201ENST00000265728 3907 ntAPPRIS P1 TSL 1 (best) BASIC19.51■□□□□ 0.71
RIPK4P57078 COL25A1-203ENST00000399132 2724 ntAPPRIS P4 TSL 5 BASIC19.51■□□□□ 0.71
RIPK4P57078 OR2V1-205ENST00000642036 2609 ntAPPRIS P1 BASIC19.51■□□□□ 0.71
RIPK4P57078 SLC7A4-201ENST00000382932 2313 ntAPPRIS P1 TSL 1 (best) BASIC19.51■□□□□ 0.71
RIPK4P57078 TRIM3-215ENST00000639856 2137 ntTSL 5 BASIC19.51■□□□□ 0.71
RIPK4P57078 DDX49-201ENST00000247003 1830 ntAPPRIS P1 TSL 1 (best) BASIC19.51■□□□□ 0.71
RIPK4P57078 SHC1P1-201ENST00000425230 1745 ntBASIC19.51■□□□□ 0.71
RIPK4P57078 PEF1-201ENST00000373703 1629 ntAPPRIS P1 TSL 1 (best) BASIC19.51■□□□□ 0.71
RIPK4P57078 HNRNPDL-208ENST00000621267 4139 ntAPPRIS P2 TSL 1 (best) BASIC19.5■□□□□ 0.71
RIPK4P57078 DNAJA1-201ENST00000330899 2381 ntAPPRIS P1 TSL 1 (best) BASIC19.5■□□□□ 0.71
RIPK4P57078 AGT-201ENST00000366667 2291 ntAPPRIS P1 TSL 1 (best) BASIC19.5■□□□□ 0.71
RIPK4P57078 MX1-218ENST00000619682 1980 ntTSL 5 BASIC19.5■□□□□ 0.71
RIPK4P57078 NLRX1-202ENST00000409109 4092 ntAPPRIS P1 TSL 1 (best) BASIC19.5■□□□□ 0.71
RIPK4P57078 DYRK1A-203ENST00000398956 1590 ntTSL 1 (best) BASIC19.5■□□□□ 0.71
RIPK4P57078 BTBD11-204ENST00000420571 3478 ntTSL 5 BASIC19.5■□□□□ 0.71
RIPK4P57078 SEPT12-201ENST00000268231 1469 ntAPPRIS P1 TSL 1 (best) BASIC19.5■□□□□ 0.71
RIPK4P57078 EGOT-201ENST00000414938 1464 ntTSL 1 (best) BASIC19.5■□□□□ 0.71
RIPK4P57078 DLGAP1-214ENST00000539435 2402 ntTSL 2 BASIC19.5■□□□□ 0.71
RIPK4P57078 RSPH6A-202ENST00000597055 2306 ntAPPRIS ALT2 TSL 1 (best) BASIC19.5■□□□□ 0.71
RIPK4P57078 AL136172.1-201ENST00000598590 1394 ntBASIC19.5■□□□□ 0.71
RIPK4P57078 SRP14-201ENST00000267884 1077 ntAPPRIS P1 TSL 1 (best) BASIC19.5■□□□□ 0.71
RIPK4P57078 FGF14-202ENST00000376143 744 ntAPPRIS P1 TSL 1 (best) BASIC19.5■□□□□ 0.71
RIPK4P57078 CRIP1-202ENST00000392531 485 ntAPPRIS P1 TSL 2 BASIC19.5■□□□□ 0.71
RIPK4P57078 MIR663B-201ENST00000408361 115 ntBASIC19.5■□□□□ 0.71
RIPK4P57078 SUMO1-204ENST00000409181 784 ntTSL 3 BASIC19.5■□□□□ 0.71
RIPK4P57078 SUMO1-207ENST00000409498 779 ntTSL 3 BASIC19.5■□□□□ 0.71
RIPK4P57078 AC020659.2-202ENST00000512295 513 ntTSL 2 BASIC19.5■□□□□ 0.71
Retrieved 100 of 98,524 protein–RNA pairs in 44.7 ms