Protein–RNA interactions for Protein: P56524

HDAC4, Histone deacetylase 4, humanhuman

Predictions only

Length 1,084 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HDAC4P56524 CYB561A3-203ENST00000447532 1803 ntTSL 5 BASIC15.68■□□□□ 0.1
HDAC4P56524 MICAL1-201ENST00000358577 3142 ntAPPRIS ALT2 TSL 1 (best) BASIC15.68■□□□□ 0.1
HDAC4P56524 FAM160A2-203ENST00000524416 3327 ntTSL 2 BASIC15.68■□□□□ 0.1
HDAC4P56524 WIZ-207ENST00000599910 4609 ntAPPRIS ALT2 TSL 5 BASIC15.68■□□□□ 0.1
HDAC4P56524 SEC63-201ENST00000369002 6411 ntAPPRIS P1 TSL 1 (best) BASIC15.68■□□□□ 0.1
HDAC4P56524 AC114490.1-201ENST00000417456 3163 ntTSL 2 BASIC15.68■□□□□ 0.1
HDAC4P56524 KIAA1191-201ENST00000298569 2991 ntAPPRIS P1 TSL 1 (best) BASIC15.68■□□□□ 0.1
HDAC4P56524 VWF-201ENST00000261405 8838 ntAPPRIS P1 TSL 1 (best) BASIC15.68■□□□□ 0.1
HDAC4P56524 CDC42EP4-202ENST00000439510 2879 ntTSL 2 BASIC15.68■□□□□ 0.1
HDAC4P56524 CSDC2-201ENST00000306149 2777 ntAPPRIS P1 TSL 1 (best) BASIC15.68■□□□□ 0.1
HDAC4P56524 LYSMD4-204ENST00000409796 2672 ntAPPRIS P1 TSL 1 (best) BASIC15.68■□□□□ 0.1
HDAC4P56524 ACVR1B-206ENST00000542485 2362 ntTSL 2 BASIC15.68■□□□□ 0.1
HDAC4P56524 GDAP1L1-201ENST00000342560 2265 ntAPPRIS P1 TSL 1 (best) BASIC15.68■□□□□ 0.1
HDAC4P56524 AC023632.2-201ENST00000523011 1789 ntTSL 2 BASIC15.68■□□□□ 0.1
HDAC4P56524 CMA1-202ENST00000250378 937 ntAPPRIS P1 TSL 1 (best) BASIC15.68■□□□□ 0.1
HDAC4P56524 ZNRD1-201ENST00000332435 864 ntAPPRIS P1 TSL 1 (best) BASIC15.68■□□□□ 0.1
HDAC4P56524 MBP-203ENST00000359645 1255 ntTSL 1 (best) BASIC15.68■□□□□ 0.1
HDAC4P56524 GABARAPL2-201ENST00000037243 1002 ntAPPRIS P1 TSL 1 (best) BASIC15.68■□□□□ 0.1
HDAC4P56524 GSAP-205ENST00000430584 600 ntTSL 5 BASIC15.68■□□□□ 0.1
HDAC4P56524 FO681548.1-201ENST00000455617 1132 ntBASIC15.68■□□□□ 0.1
HDAC4P56524 DERL3-208ENST00000476077 969 ntAPPRIS ALT2 TSL 1 (best) BASIC15.68■□□□□ 0.1
HDAC4P56524 AP001005.4-201ENST00000572530 387 ntTSL 3 BASIC15.68■□□□□ 0.1
HDAC4P56524 C9orf50-202ENST00000619117 796 ntAPPRIS ALT2 TSL 1 (best) BASIC15.68■□□□□ 0.1
HDAC4P56524 STK17B-201ENST00000263955 5287 ntAPPRIS P1 TSL 1 (best) BASIC15.68■□□□□ 0.1
HDAC4P56524 ACSL3-202ENST00000392066 3147 ntAPPRIS P1 TSL 5 BASIC15.68■□□□□ 0.1
HDAC4P56524 AC023908.3-201ENST00000564211 3047 ntBASIC15.68■□□□□ 0.1
HDAC4P56524 OR2I1P-210ENST00000642037 4691 ntBASIC15.68■□□□□ 0.1
HDAC4P56524 COL25A1-203ENST00000399132 2724 ntAPPRIS P4 TSL 5 BASIC15.68■□□□□ 0.1
HDAC4P56524 GCK-204ENST00000403799 2729 ntAPPRIS P1 TSL 1 (best) BASIC15.68■□□□□ 0.1
HDAC4P56524 MSTO1-201ENST00000245564 2431 ntAPPRIS P1 TSL 1 (best) BASIC15.68■□□□□ 0.1
HDAC4P56524 FBXO5-202ENST00000367241 2221 ntTSL 1 (best) BASIC15.68■□□□□ 0.1
HDAC4P56524 TRIM3-215ENST00000639856 2137 ntTSL 5 BASIC15.68■□□□□ 0.1
HDAC4P56524 ZNF280D-207ENST00000559237 4902 ntAPPRIS ALT2 TSL 1 (best) BASIC15.68■□□□□ 0.1
HDAC4P56524 JPH4-205ENST00000622501 3489 ntAPPRIS ALT1 TSL 5 BASIC15.68■□□□□ 0.1
HDAC4P56524 USP19-203ENST00000398892 4622 ntAPPRIS ALT2 TSL 5 BASIC15.68■□□□□ 0.1
HDAC4P56524 AC026748.1-201ENST00000624349 3251 ntBASIC15.68■□□□□ 0.1
HDAC4P56524 CAMK2B-206ENST00000353625 1624 ntAPPRIS ALT1 TSL 1 (best) BASIC15.68■□□□□ 0.1
HDAC4P56524 PNMA1-201ENST00000316836 2590 ntAPPRIS P1 BASIC15.68■□□□□ 0.1
HDAC4P56524 LINC00639-201ENST00000553932 4496 ntTSL 2 BASIC15.68■□□□□ 0.1
HDAC4P56524 FGD1-201ENST00000375135 4275 ntAPPRIS P1 TSL 1 (best) BASIC15.68■□□□□ 0.1
HDAC4P56524 FOS-202ENST00000535987 1402 ntTSL 2 BASIC15.68■□□□□ 0.1
HDAC4P56524 MAPK7-202ENST00000308406 3149 ntAPPRIS P1 TSL 1 (best) BASIC15.68■□□□□ 0.1
HDAC4P56524 KANK2-207ENST00000589894 2703 ntAPPRIS ALT2 TSL 5 BASIC15.67■□□□□ 0.1
HDAC4P56524 ZNF497-201ENST00000311044 3468 ntAPPRIS P1 TSL 2 BASIC15.67■□□□□ 0.1
HDAC4P56524 KNSTRN-202ENST00000416151 1899 ntTSL 3 BASIC15.67■□□□□ 0.1
HDAC4P56524 SYT13-201ENST00000020926 5144 ntAPPRIS P1 TSL 1 (best) BASIC15.67■□□□□ 0.1
HDAC4P56524 CHFR-204ENST00000443047 2990 ntTSL 2 BASIC15.67■□□□□ 0.1
HDAC4P56524 GLI2-203ENST00000361492 6768 ntAPPRIS P1 TSL 1 (best) BASIC15.67■□□□□ 0.1
HDAC4P56524 ARHGEF16-201ENST00000378371 2219 ntTSL 1 (best) BASIC15.67■□□□□ 0.1
HDAC4P56524 MIIP-201ENST00000235332 1573 ntAPPRIS P1 TSL 1 (best) BASIC15.67■□□□□ 0.1
HDAC4P56524 CIAPIN1-213ENST00000569370 1559 ntTSL 3 BASIC15.67■□□□□ 0.1
HDAC4P56524 C3-201ENST00000245907 5263 ntAPPRIS P1 TSL 1 (best) BASIC15.67■□□□□ 0.1
HDAC4P56524 SLC30A5-209ENST00000621204 3999 ntTSL 5 BASIC15.67■□□□□ 0.1
HDAC4P56524 AXL-202ENST00000359092 3206 ntAPPRIS ALT2 TSL 1 (best) BASIC15.67■□□□□ 0.1
HDAC4P56524 IMPDH1-203ENST00000354269 2580 ntTSL 2 BASIC15.67■□□□□ 0.1
HDAC4P56524 CATSPER4-202ENST00000456354 1912 ntAPPRIS P2 TSL 1 (best) BASIC15.67■□□□□ 0.1
HDAC4P56524 MKS1-202ENST00000393119 2397 ntAPPRIS P1 TSL 1 (best) BASIC15.67■□□□□ 0.1
HDAC4P56524 BCAR1-204ENST00000418647 3387 ntAPPRIS ALT2 TSL 2 BASIC15.67■□□□□ 0.1
HDAC4P56524 CSF2-201ENST00000296871 787 ntAPPRIS P1 TSL 1 (best) BASIC15.67■□□□□ 0.1
HDAC4P56524 IL32-202ENST00000325568 1105 ntAPPRIS P4 TSL 1 (best) BASIC15.67■□□□□ 0.1
HDAC4P56524 S100A16-201ENST00000368703 946 ntAPPRIS P1 TSL 3 BASIC15.67■□□□□ 0.1
HDAC4P56524 C1orf68-201ENST00000368775 949 ntAPPRIS P1 BASIC15.67■□□□□ 0.1
HDAC4P56524 IL32-203ENST00000382213 880 ntAPPRIS ALT2 TSL 3 BASIC15.67■□□□□ 0.1
HDAC4P56524 POM121L8P-201ENST00000417732 1281 ntBASIC15.67■□□□□ 0.1
HDAC4P56524 TMEM107-204ENST00000437139 747 ntAPPRIS ALT1 TSL 1 (best) BASIC15.67■□□□□ 0.1
HDAC4P56524 POM121L9P-203ENST00000441984 1285 ntBASIC15.67■□□□□ 0.1
HDAC4P56524 Z98749.2-207ENST00000443658 679 ntTSL 2 BASIC15.67■□□□□ 0.1
HDAC4P56524 AL355864.2-201ENST00000447420 863 ntBASIC15.67■□□□□ 0.1
HDAC4P56524 BCRP2-202ENST00000447763 634 ntBASIC15.67■□□□□ 0.1
HDAC4P56524 AC124944.1-201ENST00000448113 625 ntTSL 2 BASIC15.67■□□□□ 0.1
HDAC4P56524 AC095060.1-201ENST00000502455 549 ntTSL 4 BASIC15.67■□□□□ 0.1
HDAC4P56524 BCRP6-201ENST00000510112 632 ntBASIC15.67■□□□□ 0.1
HDAC4P56524 BCRP7-201ENST00000511549 544 ntBASIC15.67■□□□□ 0.1
HDAC4P56524 AC005865.1-202ENST00000543036 641 ntTSL 2 BASIC15.67■□□□□ 0.1
HDAC4P56524 HIRIP3-204ENST00000564026 988 ntTSL 2 BASIC15.67■□□□□ 0.1
HDAC4P56524 EGLN2-209ENST00000594140 991 ntTSL 2 BASIC15.67■□□□□ 0.1
HDAC4P56524 AC233724.13-201ENST00000598383 410 ntBASIC15.67■□□□□ 0.1
HDAC4P56524 AC012645.4-201ENST00000610691 1061 ntBASIC15.67■□□□□ 0.1
HDAC4P56524 ARID1B-222ENST00000637003 1290 ntTSL 5 BASIC15.67■□□□□ 0.1
HDAC4P56524 CPEB3-201ENST00000265997 4851 ntAPPRIS P3 TSL 1 (best) BASIC15.67■□□□□ 0.1
HDAC4P56524 ZNF587-203ENST00000423137 1974 ntAPPRIS ALT2 TSL 1 (best) BASIC15.67■□□□□ 0.1
HDAC4P56524 RSPO1-202ENST00000401068 2320 ntAPPRIS P1 TSL 1 (best) BASIC15.67■□□□□ 0.1
HDAC4P56524 BCS1L-205ENST00000412366 1430 ntAPPRIS P1 TSL 1 (best) BASIC15.67■□□□□ 0.1
HDAC4P56524 PTPN9-206ENST00000618819 7813 ntAPPRIS P2 TSL 1 (best) BASIC15.67■□□□□ 0.1
HDAC4P56524 PPM1A-203ENST00000395076 8184 ntAPPRIS P1 TSL 1 (best) BASIC15.67■□□□□ 0.1
HDAC4P56524 MAOB-201ENST00000378069 2566 ntAPPRIS P1 TSL 1 (best) BASIC15.67■□□□□ 0.1
HDAC4P56524 SEMA5B-201ENST00000195173 4523 ntAPPRIS ALT2 TSL 5 BASIC15.67■□□□□ 0.1
HDAC4P56524 DDHD2-205ENST00000520272 4532 ntAPPRIS P1 TSL 2 BASIC15.67■□□□□ 0.1
HDAC4P56524 TAP2-201ENST00000374897 5684 ntAPPRIS P2 TSL 1 (best) BASIC15.67■□□□□ 0.1
HDAC4P56524 ARFIP1-202ENST00000356064 1302 ntTSL 1 (best) BASIC15.67■□□□□ 0.1
HDAC4P56524 TLN1-201ENST00000314888 8823 ntAPPRIS P1 TSL 1 (best) BASIC15.67■□□□□ 0.1
HDAC4P56524 ZC3H14-204ENST00000336693 2007 ntTSL 1 (best) BASIC15.67■□□□□ 0.1
HDAC4P56524 PTPN13-203ENST00000427191 8487 ntAPPRIS ALT2 TSL 1 (best) BASIC15.66■□□□□ 0.1
HDAC4P56524 SRD5A2-201ENST00000622030 4648 ntAPPRIS P1 TSL 1 (best) BASIC15.66■□□□□ 0.1
HDAC4P56524 AC007292.2-201ENST00000593524 1812 ntBASIC15.66■□□□□ 0.1
HDAC4P56524 PATZ1-204ENST00000405309 3711 ntTSL 1 (best) BASIC15.66■□□□□ 0.1
HDAC4P56524 RABIF-201ENST00000367262 2430 ntAPPRIS P1 TSL 1 (best) BASIC15.66■□□□□ 0.1
HDAC4P56524 STX1A-201ENST00000222812 2095 ntAPPRIS P1 TSL 1 (best) BASIC15.66■□□□□ 0.1
HDAC4P56524 STX1A-204ENST00000395156 2050 ntTSL 1 (best) BASIC15.66■□□□□ 0.1
HDAC4P56524 RAB29-201ENST00000235932 1723 ntAPPRIS P1 TSL 1 (best) BASIC15.66■□□□□ 0.1
Retrieved 100 of 98,524 protein–RNA pairs in 35.7 ms