Protein–RNA interactions for Protein: P55317

FOXA1, Hepatocyte nuclear factor 3-alpha, humanhuman

Predictions only

Length 472 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
FOXA1P55317 AC079336.2-201ENST00000578408 927 ntTSL 3 BASIC14.52□□□□□ -0.09
FOXA1P55317 ACYP2-209ENST00000607452 831 ntTSL 2 BASIC14.52□□□□□ -0.09
FOXA1P55317 USP19-203ENST00000398892 4622 ntAPPRIS ALT2 TSL 5 BASIC14.52□□□□□ -0.09
FOXA1P55317 GLIS2-201ENST00000262366 4469 ntAPPRIS P1 TSL 2 BASIC14.52□□□□□ -0.09
FOXA1P55317 REEP3-201ENST00000373758 5205 ntAPPRIS P1 TSL 1 (best) BASIC14.52□□□□□ -0.09
FOXA1P55317 TNXB-209ENST00000613214 6842 ntTSL 5 BASIC14.52□□□□□ -0.09
FOXA1P55317 AC007240.1-201ENST00000641498 1996 ntAPPRIS P1 BASIC14.52□□□□□ -0.09
FOXA1P55317 HNRNPUL1-205ENST00000593587 2725 ntTSL 2 BASIC14.52□□□□□ -0.09
FOXA1P55317 STRADA-243ENST00000640086 1925 ntTSL 5 BASIC14.52□□□□□ -0.09
FOXA1P55317 NAA60-203ENST00000414063 2619 ntAPPRIS P1 TSL 2 BASIC14.52□□□□□ -0.09
FOXA1P55317 CYP20A1-203ENST00000429815 1812 ntTSL 2 BASIC14.52□□□□□ -0.09
FOXA1P55317 SPATS2-203ENST00000547865 1810 ntTSL 2 BASIC14.52□□□□□ -0.09
FOXA1P55317 PRNP-203ENST00000430350 2539 ntAPPRIS P1 TSL 1 (best) BASIC14.52□□□□□ -0.09
FOXA1P55317 APAF1-201ENST00000333991 4539 ntTSL 5 BASIC14.52□□□□□ -0.09
FOXA1P55317 CRELD1-203ENST00000397170 1728 ntAPPRIS P1 TSL 5 BASIC14.52□□□□□ -0.09
FOXA1P55317 SEPT7-201ENST00000350320 4350 ntAPPRIS P5 TSL 5 BASIC14.52□□□□□ -0.09
FOXA1P55317 POLL-206ENST00000370172 2308 ntTSL 2 BASIC14.52□□□□□ -0.09
FOXA1P55317 SELPLG-202ENST00000388962 1613 ntAPPRIS ALT2 TSL 5 BASIC14.52□□□□□ -0.09
FOXA1P55317 MST1P2-201ENST00000457982 2291 ntBASIC14.52□□□□□ -0.09
FOXA1P55317 CRMP1-205ENST00000512574 2764 ntTSL 2 BASIC14.51□□□□□ -0.09
FOXA1P55317 FKBP6-201ENST00000252037 1500 ntAPPRIS P3 TSL 1 (best) BASIC14.51□□□□□ -0.09
FOXA1P55317 ZBTB17-202ENST00000375743 2745 ntAPPRIS P3 TSL 1 (best) BASIC14.51□□□□□ -0.09
FOXA1P55317 RGS3-208ENST00000394646 2716 ntTSL 2 BASIC14.51□□□□□ -0.09
FOXA1P55317 CACNA2D1-201ENST00000356253 3858 ntTSL 5 BASIC14.51□□□□□ -0.09
FOXA1P55317 AGER-206ENST00000375070 1463 ntTSL 5 BASIC14.51□□□□□ -0.09
FOXA1P55317 AGER-208ENST00000438221 1493 ntTSL 1 (best) BASIC14.51□□□□□ -0.09
FOXA1P55317 TYK2-210ENST00000529370 3176 ntTSL 2 BASIC14.51□□□□□ -0.09
FOXA1P55317 TTC7A-203ENST00000409245 3033 ntTSL 2 BASIC14.51□□□□□ -0.09
FOXA1P55317 FBXL12-201ENST00000247977 1852 ntAPPRIS P1 TSL 1 (best) BASIC14.51□□□□□ -0.09
FOXA1P55317 TMEM212-201ENST00000334567 1881 ntAPPRIS P1 TSL 2 BASIC14.51□□□□□ -0.09
FOXA1P55317 LAP3-210ENST00000606142 1876 ntTSL 1 (best) BASIC14.51□□□□□ -0.09
FOXA1P55317 SLC26A8-201ENST00000355574 3463 ntAPPRIS P1 TSL 2 BASIC14.51□□□□□ -0.09
FOXA1P55317 SNRPN-201ENST00000346403 1304 ntAPPRIS P1 TSL 5 BASIC14.51□□□□□ -0.09
FOXA1P55317 LOXL3-202ENST00000393937 2398 ntTSL 5 BASIC14.51□□□□□ -0.09
FOXA1P55317 KCNC1-202ENST00000379472 7965 ntTSL 1 (best) BASIC14.51□□□□□ -0.09
FOXA1P55317 GIT1-211ENST00000581348 2827 ntAPPRIS ALT2 TSL 2 BASIC14.51□□□□□ -0.09
FOXA1P55317 MOSPD3-201ENST00000223054 1053 ntAPPRIS P1 TSL 2 BASIC14.51□□□□□ -0.09
FOXA1P55317 ETFB-201ENST00000309244 900 ntAPPRIS P1 TSL 1 (best) BASIC14.51□□□□□ -0.09
FOXA1P55317 SUV39H2-202ENST00000354919 1233 ntAPPRIS ALT2 TSL 5 BASIC14.51□□□□□ -0.09
FOXA1P55317 KLF2P2-201ENST00000416807 1039 ntBASIC14.51□□□□□ -0.09
FOXA1P55317 MEP1AP4-201ENST00000423244 1087 ntBASIC14.51□□□□□ -0.09
FOXA1P55317 UBE2H-204ENST00000473814 535 ntTSL 1 (best) BASIC14.51□□□□□ -0.09
FOXA1P55317 PRICKLE2-AS1-203ENST00000476308 623 ntTSL 2 BASIC14.51□□□□□ -0.09
FOXA1P55317 NME2-207ENST00000514264 850 ntAPPRIS P1 TSL 2 BASIC14.51□□□□□ -0.09
FOXA1P55317 CHCHD7-211ENST00000521831 573 ntTSL 2 BASIC14.51□□□□□ -0.09
FOXA1P55317 RNF24-204ENST00000545616 1128 ntTSL 1 (best) BASIC14.51□□□□□ -0.09
FOXA1P55317 AC015688.8-201ENST00000577746 656 ntTSL 4 BASIC14.51□□□□□ -0.09
FOXA1P55317 IFT20-206ENST00000578122 834 ntTSL 2 BASIC14.51□□□□□ -0.09
FOXA1P55317 IFT20-208ENST00000578985 831 ntTSL 3 BASIC14.51□□□□□ -0.09
FOXA1P55317 AC124287.1-201ENST00000582249 838 ntTSL 3 BASIC14.51□□□□□ -0.09
FOXA1P55317 AC067852.1-201ENST00000585572 594 ntTSL 4 BASIC14.51□□□□□ -0.09
FOXA1P55317 AC005306.1-201ENST00000587498 661 ntTSL 3 BASIC14.51□□□□□ -0.09
FOXA1P55317 AC005262.2-201ENST00000587701 452 ntTSL 5 BASIC14.51□□□□□ -0.09
FOXA1P55317 DKKL1-202ENST00000594268 524 ntAPPRIS ALT2 TSL 2 BASIC14.51□□□□□ -0.09
FOXA1P55317 AC004466.1-201ENST00000599515 1080 ntBASIC14.51□□□□□ -0.09
FOXA1P55317 AGAP1-213ENST00000619456 1057 ntTSL 5 BASIC14.51□□□□□ -0.09
FOXA1P55317 MLXIPL-201ENST00000313375 3278 ntAPPRIS P3 TSL 1 (best) BASIC14.51□□□□□ -0.09
FOXA1P55317 MLXIPL-206ENST00000434326 3252 ntTSL 1 (best) BASIC14.51□□□□□ -0.09
FOXA1P55317 ZNF664-202ENST00000392404 4262 ntAPPRIS P1 TSL 1 (best) BASIC14.51□□□□□ -0.09
FOXA1P55317 NARFL-202ENST00000540986 3212 ntTSL 2 BASIC14.51□□□□□ -0.09
FOXA1P55317 PTPRO-202ENST00000348962 5061 ntTSL 1 (best) BASIC14.51□□□□□ -0.09
FOXA1P55317 UBXN2B-201ENST00000399598 5068 ntAPPRIS P1 TSL 1 (best) BASIC14.51□□□□□ -0.09
FOXA1P55317 PAX3-203ENST00000344493 3109 ntTSL 1 (best) BASIC14.51□□□□□ -0.09
FOXA1P55317 PLEKHO2-202ENST00000616065 3569 ntTSL 1 (best) BASIC14.51□□□□□ -0.09
FOXA1P55317 TPM3-206ENST00000330188 2108 ntTSL 1 (best) BASIC14.51□□□□□ -0.09
FOXA1P55317 PHTF2-206ENST00000422959 3525 ntAPPRIS P4 TSL 5 BASIC14.51□□□□□ -0.09
FOXA1P55317 LARGE1-201ENST00000354992 4409 ntAPPRIS P1 TSL 1 (best) BASIC14.51□□□□□ -0.09
FOXA1P55317 CEP295NL-201ENST00000322630 2090 ntTSL 2 BASIC14.51□□□□□ -0.09
FOXA1P55317 MPHOSPH10-205ENST00000498451 2068 ntTSL 1 (best) BASIC14.51□□□□□ -0.09
FOXA1P55317 KDELR2-201ENST00000258739 2884 ntAPPRIS P1 TSL 1 (best) BASIC14.51□□□□□ -0.09
FOXA1P55317 AC016397.2-201ENST00000624848 1985 ntBASIC14.51□□□□□ -0.09
FOXA1P55317 IGF2BP2-202ENST00000382199 3688 ntAPPRIS P3 TSL 1 (best) BASIC14.51□□□□□ -0.09
FOXA1P55317 SLC4A11-202ENST00000380059 3229 ntAPPRIS ALT2 TSL 2 BASIC14.51□□□□□ -0.09
FOXA1P55317 SHISA6-203ENST00000432116 7518 ntAPPRIS ALT2 TSL 1 (best) BASIC14.51□□□□□ -0.09
FOXA1P55317 BEND3P1-201ENST00000421591 1944 ntBASIC14.51□□□□□ -0.09
FOXA1P55317 CRLS1-201ENST00000378863 3958 ntAPPRIS P1 TSL 1 (best) BASIC14.5□□□□□ -0.09
FOXA1P55317 IKBKB-217ENST00000520810 3086 ntAPPRIS P1 TSL 1 (best) BASIC14.5□□□□□ -0.09
FOXA1P55317 RNF157-AS1-204ENST00000590137 1812 ntTSL 2 BASIC14.5□□□□□ -0.09
FOXA1P55317 ZFP36L1-201ENST00000336440 3026 ntAPPRIS P1 TSL 2 BASIC14.5□□□□□ -0.09
FOXA1P55317 TPO-205ENST00000382201 2956 ntTSL 1 (best) BASIC14.5□□□□□ -0.09
FOXA1P55317 IFNAR1-201ENST00000270139 6139 ntAPPRIS P1 TSL 1 (best) BASIC14.5□□□□□ -0.09
FOXA1P55317 CPEB3-201ENST00000265997 4851 ntAPPRIS P3 TSL 1 (best) BASIC14.5□□□□□ -0.09
FOXA1P55317 INSC-208ENST00000530161 1702 ntAPPRIS ALT2 TSL 1 (best) BASIC14.5□□□□□ -0.09
FOXA1P55317 ODF3-201ENST00000325113 1307 ntAPPRIS P1 TSL 1 (best) BASIC14.5□□□□□ -0.09
FOXA1P55317 AURKC-203ENST00000448930 1318 ntAPPRIS ALT2 TSL 5 BASIC14.5□□□□□ -0.09
FOXA1P55317 PDE8A-203ENST00000394553 3912 ntAPPRIS P4 TSL 1 (best) BASIC14.5□□□□□ -0.09
FOXA1P55317 ASB10-204ENST00000420175 1694 ntAPPRIS P1 TSL 1 (best) BASIC14.5□□□□□ -0.09
FOXA1P55317 JPH4-201ENST00000356300 4278 ntAPPRIS P2 TSL 1 (best) BASIC14.5□□□□□ -0.09
FOXA1P55317 PSMG3-AS1-201ENST00000437621 5701 ntTSL 1 (best) BASIC14.5□□□□□ -0.09
FOXA1P55317 MED4-201ENST00000258648 2022 ntAPPRIS P3 TSL 1 (best) BASIC14.5□□□□□ -0.09
FOXA1P55317 PRKD1-209ENST00000616995 3498 ntAPPRIS ALT2 TSL 5 BASIC14.5□□□□□ -0.09
FOXA1P55317 OSGIN1-201ENST00000343939 2391 ntTSL 2 BASIC14.5□□□□□ -0.09
FOXA1P55317 H2BFWT-201ENST00000217926 894 ntAPPRIS P1 TSL 1 (best) BASIC14.5□□□□□ -0.09
FOXA1P55317 ALKBH6-201ENST00000252984 955 ntAPPRIS ALT2 TSL 1 (best) BASIC14.5□□□□□ -0.09
FOXA1P55317 TSFM-201ENST00000323833 1218 ntAPPRIS ALT2 TSL 1 (best) BASIC14.5□□□□□ -0.09
FOXA1P55317 KRTAP1-4-201ENST00000377747 408 ntAPPRIS P1 BASIC14.5□□□□□ -0.09
FOXA1P55317 AL022068.1-202ENST00000432171 794 ntTSL 3 BASIC14.5□□□□□ -0.09
FOXA1P55317 CR769775.1-201ENST00000443347 931 ntTSL 3 BASIC14.5□□□□□ -0.09
FOXA1P55317 AC078785.1-203ENST00000467342 573 ntTSL 4 BASIC14.5□□□□□ -0.09
FOXA1P55317 AC002116.1-201ENST00000473572 1130 ntTSL 2 BASIC14.5□□□□□ -0.09
Retrieved 100 of 98,524 protein–RNA pairs in 80.4 ms