Protein–RNA interactions for Protein: P52948

NUP98, Nuclear pore complex protein Nup98-Nup96, humanhuman

Predictions only

Length 1,817 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
NUP98P52948 SIDT1-202ENST00000393830 2572 ntTSL 1 (best) BASIC18.17■□□□□ 0.5
NUP98P52948 MICALL2-201ENST00000297508 3121 ntAPPRIS P1 TSL 1 (best) BASIC18.17■□□□□ 0.5
NUP98P52948 STOX1-201ENST00000298596 3377 ntAPPRIS P1 TSL 1 (best) BASIC18.17■□□□□ 0.5
NUP98P52948 TSPAN5-201ENST00000305798 3365 ntAPPRIS P1 TSL 1 (best) BASIC18.17■□□□□ 0.5
NUP98P52948 CCDC59-201ENST00000256151 1983 ntAPPRIS P1 TSL 1 (best) BASIC18.17■□□□□ 0.5
NUP98P52948 C7orf31-201ENST00000283905 2673 ntAPPRIS P1 TSL 1 (best) BASIC18.17■□□□□ 0.5
NUP98P52948 DBN1-202ENST00000309007 2995 ntAPPRIS ALT2 TSL 1 (best) BASIC18.17■□□□□ 0.5
NUP98P52948 CGGBP1-201ENST00000309534 4495 ntAPPRIS P1 TSL 1 (best) BASIC18.17■□□□□ 0.5
NUP98P52948 PLTP-203ENST00000372431 1743 ntAPPRIS P1 TSL 1 (best) BASIC18.17■□□□□ 0.5
NUP98P52948 CELA2B-201ENST00000375910 923 ntAPPRIS P1 TSL 1 (best) BASIC18.17■□□□□ 0.5
NUP98P52948 GRB7-204ENST00000394211 2093 ntAPPRIS P1 TSL 1 (best) BASIC18.17■□□□□ 0.5
NUP98P52948 HLA-DMA-203ENST00000395305 777 ntBASIC18.17■□□□□ 0.5
NUP98P52948 IRF9-202ENST00000396864 1838 ntAPPRIS P1 TSL 1 (best) BASIC18.17■□□□□ 0.5
NUP98P52948 EGOT-201ENST00000414938 1464 ntTSL 1 (best) BASIC18.17■□□□□ 0.5
NUP98P52948 AL139125.1-201ENST00000420395 557 ntTSL 3 BASIC18.17■□□□□ 0.5
NUP98P52948 ABAT-203ENST00000425191 1923 ntAPPRIS P1 TSL 2 BASIC18.17■□□□□ 0.5
NUP98P52948 AL161932.2-201ENST00000435436 679 ntBASIC18.17■□□□□ 0.5
NUP98P52948 AC109466.1-209ENST00000486913 1618 ntTSL 2 BASIC18.17■□□□□ 0.5
NUP98P52948 PGAP2-227ENST00000496834 1530 ntTSL 2 BASIC18.17■□□□□ 0.5
NUP98P52948 ALG1L13P-202ENST00000519320 584 ntBASIC18.17■□□□□ 0.5
NUP98P52948 MPZL3-203ENST00000525386 973 ntTSL 1 (best) BASIC18.17■□□□□ 0.5
NUP98P52948 KCTD1-207ENST00000580059 1425 ntAPPRIS P1 TSL 3 BASIC18.17■□□□□ 0.5
NUP98P52948 MIR3180-2-201ENST00000581748 88 ntBASIC18.17■□□□□ 0.5
NUP98P52948 GRAMD1A-211ENST00000599564 2825 ntTSL 5 BASIC18.17■□□□□ 0.5
NUP98P52948 ATRAID-207ENST00000606999 956 ntAPPRIS P1 TSL 1 (best) BASIC18.17■□□□□ 0.5
NUP98P52948 ANXA8L1-206ENST00000619162 1109 ntAPPRIS P1 TSL 1 (best) BASIC18.17■□□□□ 0.5
NUP98P52948 MIER1-208ENST00000401041 2552 ntTSL 2 BASIC18.17■□□□□ 0.5
NUP98P52948 CYP4X1-201ENST00000371901 2357 ntAPPRIS P1 TSL 1 (best) BASIC18.17■□□□□ 0.5
NUP98P52948 CYP4F3-203ENST00000586182 2338 ntAPPRIS ALT1 TSL 2 BASIC18.17■□□□□ 0.5
NUP98P52948 ATP6V1C1-202ENST00000518738 2130 ntAPPRIS P1 TSL 1 (best) BASIC18.17■□□□□ 0.5
NUP98P52948 SUGP2-202ENST00000337018 3640 ntAPPRIS P3 TSL 1 (best) BASIC18.17■□□□□ 0.5
NUP98P52948 CCDC8-201ENST00000307522 3213 ntAPPRIS P1 BASIC18.17■□□□□ 0.5
NUP98P52948 C2CD2L-201ENST00000336702 4771 ntAPPRIS P1 TSL 1 (best) BASIC18.17■□□□□ 0.5
NUP98P52948 ATP6V1B2-201ENST00000276390 2875 ntAPPRIS P1 TSL 1 (best) BASIC18.17■□□□□ 0.5
NUP98P52948 CDH15-201ENST00000289746 2847 ntAPPRIS P1 TSL 1 (best) BASIC18.17■□□□□ 0.5
NUP98P52948 AC068946.1-202ENST00000318673 2745 ntAPPRIS P1 TSL 2 BASIC18.16■□□□□ 0.5
NUP98P52948 PNMA1-201ENST00000316836 2590 ntAPPRIS P1 BASIC18.16■□□□□ 0.5
NUP98P52948 AC005392.1-201ENST00000419624 500 ntTSL 5 BASIC18.16■□□□□ 0.5
NUP98P52948 PTGES3-203ENST00000436399 941 ntTSL 2 BASIC18.16■□□□□ 0.5
NUP98P52948 AL049795.2-201ENST00000515055 667 ntTSL 2 BASIC18.16■□□□□ 0.5
NUP98P52948 LINC02417-201ENST00000542449 515 ntTSL 2 BASIC18.16■□□□□ 0.5
NUP98P52948 SORD2P-201ENST00000558556 1069 ntBASIC18.16■□□□□ 0.5
NUP98P52948 AC140658.4-201ENST00000561990 352 ntBASIC18.16■□□□□ 0.5
NUP98P52948 DCTPP1-202ENST00000565758 749 ntTSL 3 BASIC18.16■□□□□ 0.5
NUP98P52948 NUDT4P2-201ENST00000578341 546 ntBASIC18.16■□□□□ 0.5
NUP98P52948 TMEM205-210ENST00000588560 840 ntAPPRIS P1 TSL 2 BASIC18.16■□□□□ 0.5
NUP98P52948 AC020934.2-201ENST00000592400 456 ntTSL 3 BASIC18.16■□□□□ 0.5
NUP98P52948 ADGRE3-204ENST00000595472 486 ntTSL 3 BASIC18.16■□□□□ 0.5
NUP98P52948 ASNSD1-206ENST00000607062 968 ntTSL 5 BASIC18.16■□□□□ 0.5
NUP98P52948 MIR6858-201ENST00000620733 67 ntBASIC18.16■□□□□ 0.5
NUP98P52948 KRT33A-201ENST00000007735 1287 ntAPPRIS P1 TSL 1 (best) BASIC18.16■□□□□ 0.5
NUP98P52948 ITGBL1-207ENST00000622834 2369 ntTSL 5 BASIC18.16■□□□□ 0.5
NUP98P52948 SLC35B2-206ENST00000615337 2014 ntTSL 4 BASIC18.16■□□□□ 0.5
NUP98P52948 PDZD3-212ENST00000531114 2996 ntTSL 2 BASIC18.16■□□□□ 0.5
NUP98P52948 PRICKLE3-204ENST00000453382 1937 ntAPPRIS ALT2 TSL 5 BASIC18.16■□□□□ 0.5
NUP98P52948 CD59-201ENST00000351554 1775 ntAPPRIS P2 TSL 2 BASIC18.16■□□□□ 0.5
NUP98P52948 ABLIM2-209ENST00000505872 1680 ntAPPRIS ALT2 TSL 5 BASIC18.16■□□□□ 0.5
NUP98P52948 HOGA1-202ENST00000370646 2488 ntAPPRIS P1 TSL 1 (best) BASIC18.16■□□□□ 0.5
NUP98P52948 PDE1C-202ENST00000396182 2420 ntTSL 1 (best) BASIC18.16■□□□□ 0.5
NUP98P52948 UBE2D3-207ENST00000394801 2368 ntAPPRIS ALT1 TSL 1 (best) BASIC18.16■□□□□ 0.5
NUP98P52948 TMPRSS4-201ENST00000437212 2074 ntAPPRIS P3 TSL 1 (best) BASIC18.16■□□□□ 0.5
NUP98P52948 IDH2-201ENST00000330062 2694 ntAPPRIS P1 TSL 1 (best) BASIC18.16■□□□□ 0.5
NUP98P52948 COLCA2-202ENST00000526216 1332 ntTSL 1 (best) BASIC18.16■□□□□ 0.5
NUP98P52948 ZNF581-203ENST00000587252 1324 ntAPPRIS P1 TSL 2 BASIC18.16■□□□□ 0.5
NUP98P52948 COX14-201ENST00000317943 708 ntAPPRIS P1 TSL 2 BASIC18.16■□□□□ 0.5
NUP98P52948 PPA2-204ENST00000354147 667 ntTSL 1 (best) BASIC18.16■□□□□ 0.5
NUP98P52948 PPA2-205ENST00000432483 859 ntTSL 1 (best) BASIC18.16■□□□□ 0.5
NUP98P52948 RPL13AP19-201ENST00000434320 584 ntBASIC18.16■□□□□ 0.5
NUP98P52948 AC114501.1-201ENST00000445949 172 ntBASIC18.16■□□□□ 0.5
NUP98P52948 TXNRD2-206ENST00000462330 1129 ntTSL 3 BASIC18.16■□□□□ 0.5
NUP98P52948 PGAP2-208ENST00000464229 863 ntTSL 3 BASIC18.16■□□□□ 0.5
NUP98P52948 NAA40-205ENST00000539656 577 ntTSL 4 BASIC18.16■□□□□ 0.5
NUP98P52948 AC007376.2-201ENST00000556271 540 ntTSL 3 BASIC18.16■□□□□ 0.5
NUP98P52948 IGHV3OR16-12-201ENST00000570121 353 ntAPPRIS P1 BASIC18.16■□□□□ 0.5
NUP98P52948 RARS2-201ENST00000369536 1818 ntAPPRIS P1 TSL 1 (best) BASIC18.16■□□□□ 0.5
NUP98P52948 KCNQ5-201ENST00000342056 6688 ntAPPRIS ALT1 TSL 5 BASIC18.16■□□□□ 0.5
NUP98P52948 SEMA4C-201ENST00000305476 3545 ntAPPRIS P1 TSL 1 (best) BASIC18.16■□□□□ 0.5
NUP98P52948 RPTOR-203ENST00000570891 2286 ntTSL 1 (best) BASIC18.16■□□□□ 0.5
NUP98P52948 AGAP1-205ENST00000409538 6138 ntTSL 5 BASIC18.16■□□□□ 0.5
NUP98P52948 BUD13-201ENST00000260210 2196 ntAPPRIS P3 TSL 1 (best) BASIC18.16■□□□□ 0.5
NUP98P52948 SCYL1-208ENST00000527009 2586 ntTSL 5 BASIC18.15■□□□□ 0.5
NUP98P52948 PTBP1-202ENST00000350092 3069 ntAPPRIS ALT1 TSL 1 (best) BASIC18.15■□□□□ 0.5
NUP98P52948 CSF3-201ENST00000225474 1509 ntAPPRIS P3 TSL 1 (best) BASIC18.15■□□□□ 0.5
NUP98P52948 LACTB2-201ENST00000276590 1508 ntAPPRIS P1 TSL 1 (best) BASIC18.15■□□□□ 0.5
NUP98P52948 ANKDD1A-202ENST00000395720 1518 ntTSL 5 BASIC18.15■□□□□ 0.5
NUP98P52948 LAP3P2-201ENST00000454686 1454 ntBASIC18.15■□□□□ 0.5
NUP98P52948 SLC35A3-209ENST00000638338 2890 ntTSL 5 BASIC18.15■□□□□ 0.5
NUP98P52948 SCAMP4-202ENST00000409472 2394 ntTSL 2 BASIC18.15■□□□□ 0.5
NUP98P52948 MGAT1-201ENST00000307826 2761 ntAPPRIS P1 TSL 1 (best) BASIC18.15■□□□□ 0.5
NUP98P52948 MIR22HG-201ENST00000334146 1383 ntTSL 1 (best) BASIC18.15■□□□□ 0.5
NUP98P52948 TSSK2-201ENST00000399635 1816 ntAPPRIS P1 BASIC18.15■□□□□ 0.5
NUP98P52948 GPI-205ENST00000586425 1799 ntTSL 5 BASIC18.15■□□□□ 0.5
NUP98P52948 ATP5H-201ENST00000301587 603 ntAPPRIS P1 TSL 1 (best) BASIC18.15■□□□□ 0.5
NUP98P52948 FOLR1-202ENST00000393676 996 ntAPPRIS P1 TSL 1 (best) BASIC18.15■□□□□ 0.5
NUP98P52948 C1QA-202ENST00000402322 976 ntAPPRIS P1 TSL 1 (best) BASIC18.15■□□□□ 0.5
NUP98P52948 TMEM219-202ENST00000414689 1024 ntAPPRIS P1 TSL 1 (best) BASIC18.15■□□□□ 0.5
NUP98P52948 AC012362.1-201ENST00000434906 739 ntBASIC18.15■□□□□ 0.5
NUP98P52948 HOXB-AS3-206ENST00000474040 741 ntTSL 3 BASIC18.15■□□□□ 0.5
NUP98P52948 AC132803.1-201ENST00000504204 493 ntTSL 2 BASIC18.15■□□□□ 0.5
NUP98P52948 AC026410.1-201ENST00000507366 1101 ntBASIC18.15■□□□□ 0.5
Retrieved 100 of 98,524 protein–RNA pairs in 32.7 ms