Protein–RNA interactions for Protein: P46934

NEDD4, E3 ubiquitin-protein ligase NEDD4, humanhuman

Predictions only

Length 1,319 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
NEDD4P46934 AL590644.3-201ENST00000635428 1228 ntTSL 5 BASIC17.56■□□□□ 0.4
NEDD4P46934 LIMK2-203ENST00000340552 2789 ntTSL 1 (best) BASIC17.56■□□□□ 0.4
NEDD4P46934 SLC8A3-203ENST00000357887 5259 ntTSL 5 BASIC17.56■□□□□ 0.4
NEDD4P46934 BIRC2-214ENST00000621637 3331 ntTSL 5 BASIC17.56■□□□□ 0.4
NEDD4P46934 COL9A1-204ENST00000370496 1372 ntTSL 1 (best) BASIC17.56■□□□□ 0.4
NEDD4P46934 AL136172.1-201ENST00000598590 1394 ntBASIC17.56■□□□□ 0.4
NEDD4P46934 PITPNM1-202ENST00000436757 4216 ntAPPRIS ALT1 TSL 1 (best) BASIC17.56■□□□□ 0.4
NEDD4P46934 MCM3AP-AS1-203ENST00000421927 2280 ntTSL 2 BASIC17.56■□□□□ 0.4
NEDD4P46934 C11orf16-201ENST00000326053 1908 ntAPPRIS P1 TSL 1 (best) BASIC17.56■□□□□ 0.4
NEDD4P46934 PPFIBP1-216ENST00000545334 2805 ntTSL 2 BASIC17.56■□□□□ 0.4
NEDD4P46934 RAI1-207ENST00000640861 5172 ntTSL 5 BASIC17.56■□□□□ 0.4
NEDD4P46934 UBA6-202ENST00000420827 1664 ntTSL 1 (best) BASIC17.56■□□□□ 0.4
NEDD4P46934 ADAM15-201ENST00000271836 2799 ntAPPRIS ALT2 TSL 1 (best) BASIC17.56■□□□□ 0.4
NEDD4P46934 CCDC22-201ENST00000376227 2319 ntAPPRIS P1 TSL 1 (best) BASIC17.56■□□□□ 0.4
NEDD4P46934 CYP4F3-203ENST00000586182 2338 ntAPPRIS ALT1 TSL 2 BASIC17.56■□□□□ 0.4
NEDD4P46934 AC140479.7-201ENST00000636301 2332 ntBASIC17.56■□□□□ 0.4
NEDD4P46934 FXYD3-202ENST00000346446 1320 ntTSL 2 BASIC17.56■□□□□ 0.4
NEDD4P46934 CBX3-202ENST00000396386 1857 ntAPPRIS P1 TSL 1 (best) BASIC17.56■□□□□ 0.4
NEDD4P46934 OSGIN2-202ENST00000451899 4266 ntAPPRIS P1 TSL 1 (best) BASIC17.56■□□□□ 0.4
NEDD4P46934 SIGLEC12-203ENST00000598614 1434 ntTSL 5 BASIC17.56■□□□□ 0.4
NEDD4P46934 REXO1L6P-201ENST00000603433 1515 ntBASIC17.55■□□□□ 0.4
NEDD4P46934 SLC4A9-203ENST00000506545 2838 ntTSL 1 (best) BASIC17.55■□□□□ 0.4
NEDD4P46934 SPRY4-202ENST00000434127 2379 ntAPPRIS P1 TSL 1 (best) BASIC17.55■□□□□ 0.4
NEDD4P46934 PPP4R4-201ENST00000304338 3868 ntAPPRIS P1 TSL 1 (best) BASIC17.55■□□□□ 0.4
NEDD4P46934 DNM1-203ENST00000393594 3245 ntAPPRIS ALT1 TSL 2 BASIC17.55■□□□□ 0.4
NEDD4P46934 AC092135.3-201ENST00000624151 1846 ntBASIC17.55■□□□□ 0.4
NEDD4P46934 SLC35G3-201ENST00000297307 2004 ntAPPRIS P1 BASIC17.55■□□□□ 0.4
NEDD4P46934 RBM12-201ENST00000359646 5332 ntAPPRIS P1 TSL 1 (best) BASIC17.55■□□□□ 0.4
NEDD4P46934 FIS1-201ENST00000223136 734 ntAPPRIS P1 TSL 1 (best) BASIC17.55■□□□□ 0.4
NEDD4P46934 EIF3G-201ENST00000253108 1103 ntAPPRIS P1 TSL 1 (best) BASIC17.55■□□□□ 0.4
NEDD4P46934 TEX29-201ENST00000283547 709 ntAPPRIS P1 TSL 1 (best) BASIC17.55■□□□□ 0.4
NEDD4P46934 SYNGR1-205ENST00000406293 564 ntTSL 2 BASIC17.55■□□□□ 0.4
NEDD4P46934 KLC4-205ENST00000458460 1251 ntTSL 1 (best) BASIC17.55■□□□□ 0.4
NEDD4P46934 AC100850.1-201ENST00000506768 649 ntBASIC17.55■□□□□ 0.4
NEDD4P46934 AL163974.1-201ENST00000554540 466 ntTSL 5 BASIC17.55■□□□□ 0.4
NEDD4P46934 AC120498.3-201ENST00000568884 542 ntTSL 4 BASIC17.55■□□□□ 0.4
NEDD4P46934 TOMM70-201ENST00000284320 4409 ntAPPRIS P1 TSL 1 (best) BASIC17.55■□□□□ 0.4
NEDD4P46934 AC007686.3-201ENST00000619017 3487 ntBASIC17.55■□□□□ 0.4
NEDD4P46934 ASB10-204ENST00000420175 1694 ntAPPRIS P1 TSL 1 (best) BASIC17.55■□□□□ 0.4
NEDD4P46934 AP001627.1-201ENST00000437426 1754 ntTSL 1 (best) BASIC17.55■□□□□ 0.4
NEDD4P46934 C15orf52-206ENST00000559313 3022 ntAPPRIS P2 TSL 5 BASIC17.55■□□□□ 0.4
NEDD4P46934 HOGA1-203ENST00000370647 1999 ntTSL 1 (best) BASIC17.55■□□□□ 0.4
NEDD4P46934 TOMM34-201ENST00000372813 2062 ntAPPRIS P1 TSL 1 (best) BASIC17.55■□□□□ 0.4
NEDD4P46934 WDR25-204ENST00000554175 2055 ntTSL 1 (best) BASIC17.55■□□□□ 0.4
NEDD4P46934 HMGXB3-202ENST00000503427 5275 ntAPPRIS ALT2 TSL 5 BASIC17.55■□□□□ 0.4
NEDD4P46934 PIANP-202ENST00000534837 2695 ntAPPRIS ALT2 TSL 1 (best) BASIC17.55■□□□□ 0.4
NEDD4P46934 LMBR1-202ENST00000359422 4727 ntTSL 5 BASIC17.55■□□□□ 0.4
NEDD4P46934 SLC26A11-202ENST00000411502 2872 ntAPPRIS P1 TSL 2 BASIC17.55■□□□□ 0.4
NEDD4P46934 HDAC11-201ENST00000295757 2960 ntAPPRIS P3 TSL 1 (best) BASIC17.55■□□□□ 0.4
NEDD4P46934 PHF3-209ENST00000509330 2969 ntTSL 1 (best) BASIC17.55■□□□□ 0.4
NEDD4P46934 CCDC47-201ENST00000225726 3466 ntAPPRIS P1 TSL 1 (best) BASIC17.55■□□□□ 0.4
NEDD4P46934 LINC01667-202ENST00000623919 1422 ntTSL 5 BASIC17.55■□□□□ 0.4
NEDD4P46934 AP4M1-201ENST00000359593 1817 ntAPPRIS P1 TSL 1 (best) BASIC17.55■□□□□ 0.4
NEDD4P46934 AP4M1-206ENST00000429084 1836 ntTSL 5 BASIC17.55■□□□□ 0.4
NEDD4P46934 STAG3L2-201ENST00000426587 2130 ntTSL 2 BASIC17.55■□□□□ 0.4
NEDD4P46934 MAPT-201ENST00000262410 6762 ntAPPRIS P4 TSL 1 (best) BASIC17.55■□□□□ 0.4
NEDD4P46934 DTX3-202ENST00000548198 3199 ntAPPRIS P3 TSL 2 BASIC17.54■□□□□ 0.4
NEDD4P46934 PCDHA12-201ENST00000398631 5233 ntAPPRIS P1 TSL 1 (best) BASIC17.54■□□□□ 0.4
NEDD4P46934 BST2-201ENST00000252593 1019 ntAPPRIS P1 TSL 1 (best) BASIC17.54■□□□□ 0.4
NEDD4P46934 TSHR-202ENST00000342443 1281 ntTSL 1 (best) BASIC17.54■□□□□ 0.4
NEDD4P46934 NCR3-204ENST00000376073 1097 ntAPPRIS ALT2 TSL 1 (best) BASIC17.54■□□□□ 0.4
NEDD4P46934 CRIP1-202ENST00000392531 485 ntAPPRIS P1 TSL 2 BASIC17.54■□□□□ 0.4
NEDD4P46934 AL031283.3-201ENST00000439788 727 ntTSL 3 BASIC17.54■□□□□ 0.4
NEDD4P46934 RPSAP36-202ENST00000494591 1261 ntBASIC17.54■□□□□ 0.4
NEDD4P46934 GDNF-AS1-201ENST00000503382 604 ntTSL 1 (best) BASIC17.54■□□□□ 0.4
NEDD4P46934 CDC23-208ENST00000505120 455 ntTSL 3 BASIC17.54■□□□□ 0.4
NEDD4P46934 ALG3P1-201ENST00000508806 1114 ntBASIC17.54■□□□□ 0.4
NEDD4P46934 CYBA-208ENST00000567174 1085 ntTSL 2 BASIC17.54■□□□□ 0.4
NEDD4P46934 AC108134.4-201ENST00000570700 302 ntTSL 3 BASIC17.54■□□□□ 0.4
NEDD4P46934 AC011447.3-204ENST00000585498 883 ntTSL 2 BASIC17.54■□□□□ 0.4
NEDD4P46934 AC003070.2-201ENST00000589730 386 ntTSL 3 BASIC17.54■□□□□ 0.4
NEDD4P46934 ZNF347-208ENST00000601804 496 ntTSL 4 BASIC17.54■□□□□ 0.4
NEDD4P46934 AC114737.3-201ENST00000636708 570 ntTSL 4 BASIC17.54■□□□□ 0.4
NEDD4P46934 SUGP2-202ENST00000337018 3640 ntAPPRIS P3 TSL 1 (best) BASIC17.54■□□□□ 0.4
NEDD4P46934 CHPF2-204ENST00000495645 2709 ntTSL 2 BASIC17.54■□□□□ 0.4
NEDD4P46934 UBE2J1-201ENST00000435041 4290 ntAPPRIS P1 TSL 1 (best) BASIC17.54■□□□□ 0.4
NEDD4P46934 STUM-202ENST00000366789 4093 ntAPPRIS ALT1 TSL 5 BASIC17.54■□□□□ 0.4
NEDD4P46934 B4GALT3-213ENST00000622395 2414 ntAPPRIS P1 TSL 1 (best) BASIC17.54■□□□□ 0.4
NEDD4P46934 CACNA1A-214ENST00000614285 8410 ntAPPRIS ALT2 TSL 5 BASIC17.54■□□□□ 0.4
NEDD4P46934 AC005089.1-201ENST00000619486 2241 ntBASIC17.54■□□□□ 0.4
NEDD4P46934 TAF1C-216ENST00000566732 2972 ntAPPRIS ALT2 TSL 2 BASIC17.54■□□□□ 0.4
NEDD4P46934 CENPK-202ENST00000396679 1734 ntAPPRIS P1 TSL 1 (best) BASIC17.54■□□□□ 0.4
NEDD4P46934 ELFN1-201ENST00000424383 3845 ntAPPRIS P1 TSL 5 BASIC17.54■□□□□ 0.4
NEDD4P46934 SLC18A1-203ENST00000381608 1419 ntTSL 5 BASIC17.54■□□□□ 0.4
NEDD4P46934 PTOV1-214ENST00000600603 1443 ntTSL 1 (best) BASIC17.54■□□□□ 0.4
NEDD4P46934 ZNF79-202ENST00000543471 2194 ntTSL 2 BASIC17.54■□□□□ 0.4
NEDD4P46934 ZNF79-203ENST00000612342 2192 ntTSL 2 BASIC17.54■□□□□ 0.4
NEDD4P46934 TMEM201-202ENST00000340381 3776 ntAPPRIS P1 TSL 5 BASIC17.54■□□□□ 0.4
NEDD4P46934 ZNF219-203ENST00000451119 2918 ntAPPRIS P1 TSL 5 BASIC17.54■□□□□ 0.4
NEDD4P46934 AP001267.2-201ENST00000532619 2086 ntBASIC17.54■□□□□ 0.4
NEDD4P46934 FEM1C-201ENST00000274457 5816 ntAPPRIS P1 TSL 1 (best) BASIC17.54■□□□□ 0.4
NEDD4P46934 P2RX5-207ENST00000551178 1863 ntTSL 1 (best) BASIC17.54■□□□□ 0.4
NEDD4P46934 KDM5C-202ENST00000375379 5245 ntAPPRIS ALT2 TSL 5 BASIC17.54■□□□□ 0.4
NEDD4P46934 POLR2B-205ENST00000441246 3839 ntTSL 2 BASIC17.54■□□□□ 0.4
NEDD4P46934 HNRNPU-205ENST00000444376 6827 ntAPPRIS P3 TSL 1 (best) BASIC17.53■□□□□ 0.4
NEDD4P46934 GPANK1-203ENST00000375896 1910 ntAPPRIS P1 TSL 1 (best) BASIC17.53■□□□□ 0.4
NEDD4P46934 STIP1-207ENST00000538945 1900 ntTSL 2 BASIC17.53■□□□□ 0.4
NEDD4P46934 PCDHA7-201ENST00000356878 2922 ntAPPRIS ALT2 BASIC17.53■□□□□ 0.4
NEDD4P46934 ZSWIM8-213ENST00000603114 5919 ntTSL 5 BASIC17.53■□□□□ 0.4
NEDD4P46934 PDZK1IP1-201ENST00000294338 846 ntAPPRIS P1 TSL 1 (best) BASIC17.53■□□□□ 0.4
Retrieved 100 of 98,524 protein–RNA pairs in 31.2 ms