Protein–RNA interactions for Protein: P43378

PTPN9, Tyrosine-protein phosphatase non-receptor type 9, humanhuman

Predictions only

Length 593 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PTPN9P43378 AP000345.1-201ENST00000454863 569 ntTSL 4 BASIC15.54■□□□□ 0.08
PTPN9P43378 CROCCP4-201ENST00000457096 498 ntBASIC15.54■□□□□ 0.08
PTPN9P43378 TMEM14B-212ENST00000475942 992 ntTSL 2 BASIC15.54■□□□□ 0.08
PTPN9P43378 KCNK16-205ENST00000507712 889 ntTSL 3 BASIC15.54■□□□□ 0.08
PTPN9P43378 AL355102.5-201ENST00000554769 572 ntTSL 4 BASIC15.54■□□□□ 0.08
PTPN9P43378 PIGH-209ENST00000559581 1049 ntTSL 4 BASIC15.54■□□□□ 0.08
PTPN9P43378 AC012615.4-201ENST00000586694 607 ntTSL 4 BASIC15.54■□□□□ 0.08
PTPN9P43378 SLC35G4-201ENST00000588001 1017 ntAPPRIS P1 BASIC15.54■□□□□ 0.08
PTPN9P43378 YIF1B-216ENST00000592694 1181 ntTSL 1 (best) BASIC15.54■□□□□ 0.08
PTPN9P43378 C19orf53-206ENST00000593274 491 ntTSL 2 BASIC15.54■□□□□ 0.08
PTPN9P43378 OR10B1P-201ENST00000601666 907 ntBASIC15.54■□□□□ 0.08
PTPN9P43378 AP001002.3-201ENST00000623482 206 ntBASIC15.54■□□□□ 0.08
PTPN9P43378 RHOXF1P1-202ENST00000635473 501 ntBASIC15.54■□□□□ 0.08
PTPN9P43378 TPM3-208ENST00000341485 2063 ntTSL 1 (best) BASIC15.54■□□□□ 0.08
PTPN9P43378 AP001267.2-201ENST00000532619 2086 ntBASIC15.54■□□□□ 0.08
PTPN9P43378 RRM1-214ENST00000534285 2075 ntTSL 5 BASIC15.54■□□□□ 0.08
PTPN9P43378 ELMSAN1-202ENST00000394071 7721 ntAPPRIS P2 TSL 1 (best) BASIC15.54■□□□□ 0.08
PTPN9P43378 BARHL2-201ENST00000370445 1979 ntAPPRIS P1 TSL 1 (best) BASIC15.54■□□□□ 0.08
PTPN9P43378 CHEK2-204ENST00000382580 1971 ntAPPRIS ALT2 TSL 1 (best) BASIC15.54■□□□□ 0.08
PTPN9P43378 ARVCF-202ENST00000401994 2700 ntTSL 5 BASIC15.54■□□□□ 0.08
PTPN9P43378 TSFM-207ENST00000540550 1935 ntTSL 2 BASIC15.54■□□□□ 0.08
PTPN9P43378 FAM210A-202ENST00000402563 4240 ntAPPRIS P1 TSL 3 BASIC15.54■□□□□ 0.08
PTPN9P43378 ZNF7-203ENST00000525266 1874 ntTSL 2 BASIC15.54■□□□□ 0.08
PTPN9P43378 PHRF1-203ENST00000416188 5227 ntAPPRIS P3 TSL 1 (best) BASIC15.54■□□□□ 0.08
PTPN9P43378 ECE1-204ENST00000415912 5099 ntAPPRIS ALT1 TSL 1 (best) BASIC15.54■□□□□ 0.08
PTPN9P43378 AC007191.1-201ENST00000623179 2995 ntBASIC15.54■□□□□ 0.08
PTPN9P43378 AC004754.1-201ENST00000600536 2242 ntAPPRIS P1 TSL 5 BASIC15.53■□□□□ 0.08
PTPN9P43378 ALDH8A1-204ENST00000367847 1587 ntTSL 2 BASIC15.53■□□□□ 0.08
PTPN9P43378 RPS23-201ENST00000296674 3437 ntAPPRIS P1 TSL 1 (best) BASIC15.53■□□□□ 0.08
PTPN9P43378 ZNF79-202ENST00000543471 2194 ntTSL 2 BASIC15.53■□□□□ 0.08
PTPN9P43378 ZNF79-203ENST00000612342 2192 ntTSL 2 BASIC15.53■□□□□ 0.08
PTPN9P43378 KAT8-201ENST00000219797 1525 ntAPPRIS P1 TSL 1 (best) BASIC15.53■□□□□ 0.08
PTPN9P43378 PDIA3P1-201ENST00000471856 1510 ntBASIC15.53■□□□□ 0.08
PTPN9P43378 LINC01225-202ENST00000562339 2113 ntTSL 1 (best) BASIC15.53■□□□□ 0.08
PTPN9P43378 SAFB-202ENST00000454510 2650 ntAPPRIS ALT2 TSL 2 BASIC15.53■□□□□ 0.08
PTPN9P43378 INHBA-205ENST00000638023 2002 ntAPPRIS P1 TSL 5 BASIC15.53■□□□□ 0.08
PTPN9P43378 IMPDH1-203ENST00000354269 2580 ntTSL 2 BASIC15.53■□□□□ 0.08
PTPN9P43378 ANKRD26-201ENST00000376087 6591 ntAPPRIS P2 TSL 5 BASIC15.53■□□□□ 0.08
PTPN9P43378 FAM153A-220ENST00000513554 1437 ntAPPRIS ALT2 TSL 5 BASIC15.53■□□□□ 0.08
PTPN9P43378 AC015802.1-201ENST00000588104 1449 ntBASIC15.53■□□□□ 0.08
PTPN9P43378 AC012531.2-201ENST00000512206 1389 ntTSL 1 (best) BASIC15.53■□□□□ 0.08
PTPN9P43378 PTK7-210ENST00000471863 2412 ntTSL 1 (best) BASIC15.53■□□□□ 0.08
PTPN9P43378 ANXA8L1-208ENST00000622769 1861 ntTSL 1 (best) BASIC15.53■□□□□ 0.08
PTPN9P43378 BACE2-203ENST00000347667 8764 ntTSL 1 (best) BASIC15.53■□□□□ 0.08
PTPN9P43378 MAPT-206ENST00000415613 2331 ntAPPRIS ALT2 TSL 5 BASIC15.53■□□□□ 0.08
PTPN9P43378 THOC7-201ENST00000295899 990 ntAPPRIS P1 TSL 1 (best) BASIC15.53■□□□□ 0.08
PTPN9P43378 AC004945.1-201ENST00000416738 983 ntBASIC15.53■□□□□ 0.08
PTPN9P43378 AC005034.1-201ENST00000426657 489 ntBASIC15.53■□□□□ 0.08
PTPN9P43378 KIF9-205ENST00000432493 633 ntTSL 1 (best) BASIC15.53■□□□□ 0.08
PTPN9P43378 U91328.1-201ENST00000437528 223 ntBASIC15.53■□□□□ 0.08
PTPN9P43378 SVIL-AS1-208ENST00000446807 1007 ntTSL 3 BASIC15.53■□□□□ 0.08
PTPN9P43378 RHOXF1P1-201ENST00000454625 772 ntTSL 3 BASIC15.53■□□□□ 0.08
PTPN9P43378 TMEM14B-210ENST00000473276 730 ntTSL 3 BASIC15.53■□□□□ 0.08
PTPN9P43378 LIMS3-203ENST00000480744 1197 ntAPPRIS P1 TSL 5 BASIC15.53■□□□□ 0.08
PTPN9P43378 NAA50-208ENST00000497255 789 ntTSL 5 BASIC15.53■□□□□ 0.08
PTPN9P43378 AHRR-211ENST00000515206 462 ntTSL 5 BASIC15.53■□□□□ 0.08
PTPN9P43378 ZNF720-210ENST00000534369 791 ntTSL 3 BASIC15.53■□□□□ 0.08
PTPN9P43378 AC018653.3-202ENST00000538062 735 ntTSL 3 BASIC15.53■□□□□ 0.08
PTPN9P43378 AC008011.2-201ENST00000538113 792 ntTSL 3 BASIC15.53■□□□□ 0.08
PTPN9P43378 KRT17P8-201ENST00000540749 863 ntBASIC15.53■□□□□ 0.08
PTPN9P43378 MAX-211ENST00000555667 574 ntTSL 1 (best) BASIC15.53■□□□□ 0.08
PTPN9P43378 AC009133.1-202ENST00000563806 494 ntTSL 3 BASIC15.53■□□□□ 0.08
PTPN9P43378 TMEM14B-220ENST00000612333 888 ntTSL 3 BASIC15.53■□□□□ 0.08
PTPN9P43378 TTC29-208ENST00000513335 2226 ntAPPRIS ALT2 TSL 2 BASIC15.53■□□□□ 0.08
PTPN9P43378 BTNL8-206ENST00000508408 1717 ntTSL 1 (best) BASIC15.53■□□□□ 0.08
PTPN9P43378 INSC-208ENST00000530161 1702 ntAPPRIS ALT2 TSL 1 (best) BASIC15.53■□□□□ 0.08
PTPN9P43378 LINC01864-201ENST00000587218 1661 ntTSL 1 (best) BASIC15.53■□□□□ 0.08
PTPN9P43378 FES-203ENST00000394302 2133 ntTSL 5 BASIC15.53■□□□□ 0.08
PTPN9P43378 TAMM41-205ENST00000444133 1619 ntTSL 2 BASIC15.53■□□□□ 0.08
PTPN9P43378 XKR5-201ENST00000618742 4893 ntAPPRIS P1 TSL 1 (best) BASIC15.53■□□□□ 0.08
PTPN9P43378 ANKHD1-202ENST00000297183 7606 ntTSL 5 BASIC15.53■□□□□ 0.08
PTPN9P43378 AC009093.2-202ENST00000620513 2079 ntBASIC15.53■□□□□ 0.08
PTPN9P43378 PPM1B-204ENST00000378551 3877 ntAPPRIS ALT1 TSL 1 (best) BASIC15.53■□□□□ 0.08
PTPN9P43378 MVK-214ENST00000629016 1591 ntTSL 5 BASIC15.53■□□□□ 0.08
PTPN9P43378 FAM189A2-201ENST00000257515 2423 ntAPPRIS P1 TSL 1 (best) BASIC15.53■□□□□ 0.08
PTPN9P43378 SRD5A2-201ENST00000622030 4648 ntAPPRIS P1 TSL 1 (best) BASIC15.53■□□□□ 0.08
PTPN9P43378 RBBP8-201ENST00000327155 3288 ntAPPRIS P1 TSL 1 (best) BASIC15.53■□□□□ 0.08
PTPN9P43378 SUMO1-203ENST00000392246 1536 ntAPPRIS P1 TSL 1 (best) BASIC15.53■□□□□ 0.08
PTPN9P43378 UBE3B-212ENST00000540230 1541 ntTSL 1 (best) BASIC15.53■□□□□ 0.08
PTPN9P43378 FGR-203ENST00000374005 2729 ntAPPRIS P1 TSL 1 (best) BASIC15.52■□□□□ 0.08
PTPN9P43378 GALNT16-202ENST00000448469 2270 ntAPPRIS P1 TSL 1 (best) BASIC15.52■□□□□ 0.08
PTPN9P43378 AGTPBP1-208ENST00000628899 4222 ntTSL 2 BASIC15.52■□□□□ 0.08
PTPN9P43378 AIFM2-202ENST00000373248 2570 ntAPPRIS P1 TSL 1 (best) BASIC15.52■□□□□ 0.08
PTPN9P43378 FAM180B-201ENST00000538490 1388 ntAPPRIS P1 TSL 1 (best) BASIC15.52■□□□□ 0.08
PTPN9P43378 NAA60-229ENST00000575076 2531 ntAPPRIS P1 TSL 1 (best) BASIC15.52■□□□□ 0.08
PTPN9P43378 CNOT9-208ENST00000542068 3259 ntAPPRIS P1 TSL 5 BASIC15.52■□□□□ 0.08
PTPN9P43378 NACC1-201ENST00000292431 4445 ntAPPRIS P1 TSL 1 (best) BASIC15.52■□□□□ 0.08
PTPN9P43378 AC063926.2-201ENST00000623766 1308 ntBASIC15.52■□□□□ 0.08
PTPN9P43378 CAPN5-202ENST00000456580 2805 ntTSL 2 BASIC15.52■□□□□ 0.08
PTPN9P43378 ANKMY1-203ENST00000373318 2449 ntTSL 1 (best) BASIC15.52■□□□□ 0.08
PTPN9P43378 LMNA-201ENST00000347559 3137 ntTSL 5 BASIC15.52■□□□□ 0.08
PTPN9P43378 PFDN5-202ENST00000334478 586 ntAPPRIS P1 TSL 1 (best) BASIC15.52■□□□□ 0.08
PTPN9P43378 SNX21-203ENST00000372541 771 ntTSL 2 BASIC15.52■□□□□ 0.08
PTPN9P43378 TAF8-202ENST00000372978 794 ntTSL 1 (best) BASIC15.52■□□□□ 0.08
PTPN9P43378 AC079776.1-201ENST00000401540 1152 ntBASIC15.52■□□□□ 0.08
PTPN9P43378 HEBP2-202ENST00000448741 661 ntTSL 5 BASIC15.52■□□□□ 0.08
PTPN9P43378 MAATS1-203ENST00000463700 939 ntTSL 1 (best) BASIC15.52■□□□□ 0.08
PTPN9P43378 CDC23-208ENST00000505120 455 ntTSL 3 BASIC15.52■□□□□ 0.08
PTPN9P43378 HOXC-AS3-201ENST00000509870 544 ntTSL 4 BASIC15.52■□□□□ 0.08
PTPN9P43378 NAPSB-201ENST00000525179 678 ntTSL 3 BASIC15.52■□□□□ 0.08
Retrieved 100 of 98,524 protein–RNA pairs in 42.4 ms