Protein–RNA interactions for Protein: P02461

COL3A1, Collagen alpha-1(III) chain, humanhuman

Predicted RBP Predictions only

Length 1,466 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL3A1P02461 ZNF18-201ENST00000322748 2767 ntAPPRIS P3 TSL 2 BASIC19.37■□□□□ 0.69
COL3A1P02461 CD2AP-201ENST00000359314 5412 ntAPPRIS P1 TSL 1 (best) BASIC19.36■□□□□ 0.69
COL3A1P02461 GSN-203ENST00000373808 2664 ntTSL 2 BASIC19.36■□□□□ 0.69
COL3A1P02461 RABEPK-201ENST00000259460 1313 ntTSL 1 (best) BASIC19.36■□□□□ 0.69
COL3A1P02461 AC103702.1-201ENST00000548801 2630 ntBASIC19.36■□□□□ 0.69
COL3A1P02461 ZNF557-201ENST00000252840 2268 ntAPPRIS P3 TSL 1 (best) BASIC19.36■□□□□ 0.69
COL3A1P02461 FAM45A-201ENST00000361432 1648 ntAPPRIS P1 TSL 1 (best) BASIC19.36■□□□□ 0.69
COL3A1P02461 STRADA-243ENST00000640086 1925 ntTSL 5 BASIC19.36■□□□□ 0.69
COL3A1P02461 INPP5K-201ENST00000320345 2880 ntTSL 5 BASIC19.36■□□□□ 0.69
COL3A1P02461 GNRH2-204ENST00000380347 758 ntAPPRIS ALT2 TSL 5 BASIC19.36■□□□□ 0.69
COL3A1P02461 SNHG17-201ENST00000413755 648 ntTSL 3 BASIC19.36■□□□□ 0.69
COL3A1P02461 AL161719.1-201ENST00000442716 385 ntTSL 5 BASIC19.36■□□□□ 0.69
COL3A1P02461 SNHG14-206ENST00000450809 677 ntTSL 1 (best) BASIC19.36■□□□□ 0.69
COL3A1P02461 CD164-210ENST00000512821 964 ntTSL 2 BASIC19.36■□□□□ 0.69
COL3A1P02461 AL136088.1-202ENST00000525871 439 ntTSL 2 BASIC19.36■□□□□ 0.69
COL3A1P02461 AC242376.1-201ENST00000559033 726 ntBASIC19.36■□□□□ 0.69
COL3A1P02461 AC011474.2-201ENST00000579268 543 ntTSL 3 BASIC19.36■□□□□ 0.69
COL3A1P02461 DRG2-220ENST00000583355 891 ntTSL 3 BASIC19.36■□□□□ 0.69
COL3A1P02461 MIR3188-201ENST00000583494 85 ntBASIC19.36■□□□□ 0.69
COL3A1P02461 FBXL12-212ENST00000592067 879 ntTSL 2 BASIC19.36■□□□□ 0.69
COL3A1P02461 GCKR-201ENST00000264717 2186 ntAPPRIS P1 TSL 1 (best) BASIC19.36■□□□□ 0.69
COL3A1P02461 ODF2L-204ENST00000370566 2155 ntAPPRIS P1 TSL 2 BASIC19.36■□□□□ 0.69
COL3A1P02461 COCH-203ENST00000460581 2688 ntTSL 2 BASIC19.36■□□□□ 0.69
COL3A1P02461 TLE3-203ENST00000451782 2356 ntAPPRIS ALT1 TSL 5 BASIC19.36■□□□□ 0.69
COL3A1P02461 ALDH3A1-201ENST00000225740 1779 ntAPPRIS P1 TSL 1 (best) BASIC19.36■□□□□ 0.69
COL3A1P02461 KRT8P19-201ENST00000551916 1455 ntBASIC19.36■□□□□ 0.69
COL3A1P02461 RASEF-202ENST00000376447 5576 ntAPPRIS P1 TSL 1 (best) BASIC19.36■□□□□ 0.69
COL3A1P02461 TNPO2-201ENST00000356861 4962 ntAPPRIS ALT1 TSL 1 (best) BASIC19.36■□□□□ 0.69
COL3A1P02461 ARMCX6-208ENST00000539247 1928 ntAPPRIS P1 TSL 4 BASIC19.36■□□□□ 0.69
COL3A1P02461 MXD4-201ENST00000337190 4056 ntAPPRIS P1 TSL 1 (best) BASIC19.36■□□□□ 0.69
COL3A1P02461 PRNP-201ENST00000379440 2657 ntAPPRIS P1 TSL 1 (best) BASIC19.36■□□□□ 0.69
COL3A1P02461 LIMK2-204ENST00000406516 2657 ntTSL 5 BASIC19.36■□□□□ 0.69
COL3A1P02461 OR1J1-201ENST00000259357 969 ntAPPRIS P1 BASIC19.35■□□□□ 0.69
COL3A1P02461 CRYBA4-201ENST00000354760 811 ntAPPRIS P1 TSL 1 (best) BASIC19.35■□□□□ 0.69
COL3A1P02461 RNF144A-AS1-203ENST00000426122 579 ntTSL 4 BASIC19.35■□□□□ 0.69
COL3A1P02461 TSPY25P-201ENST00000429463 745 ntBASIC19.35■□□□□ 0.69
COL3A1P02461 AC106786.1-201ENST00000442777 792 ntTSL 3 BASIC19.35■□□□□ 0.69
COL3A1P02461 AC008438.1-201ENST00000507521 549 ntTSL 2 BASIC19.35■□□□□ 0.69
COL3A1P02461 HOXA10-AS-202ENST00000519935 1161 ntTSL 3 BASIC19.35■□□□□ 0.69
COL3A1P02461 AC037486.1-201ENST00000523792 790 ntTSL 1 (best) BASIC19.35■□□□□ 0.69
COL3A1P02461 MRPL48-210ENST00000542303 661 ntTSL 3 BASIC19.35■□□□□ 0.69
COL3A1P02461 AP001043.1-205ENST00000623098 1033 ntTSL 5 BASIC19.35■□□□□ 0.69
COL3A1P02461 UGT8-201ENST00000310836 4084 ntAPPRIS P1 TSL 1 (best) BASIC19.35■□□□□ 0.69
COL3A1P02461 ZNF174-201ENST00000268655 2260 ntAPPRIS P1 TSL 1 (best) BASIC19.35■□□□□ 0.69
COL3A1P02461 MAGED4B-202ENST00000360134 2510 ntAPPRIS ALT2 TSL 1 (best) BASIC19.35■□□□□ 0.69
COL3A1P02461 RECQL4-210ENST00000621189 3896 ntTSL 1 (best) BASIC19.35■□□□□ 0.69
COL3A1P02461 NBAT1-201ENST00000566912 1940 ntTSL 2 BASIC19.35■□□□□ 0.69
COL3A1P02461 KCNN3-202ENST00000358505 1658 ntTSL 1 (best) BASIC19.35■□□□□ 0.69
COL3A1P02461 LIMS2-209ENST00000410038 1695 ntTSL 2 BASIC19.35■□□□□ 0.69
COL3A1P02461 KIAA1614-AS1-201ENST00000415647 1440 ntTSL 2 BASIC19.35■□□□□ 0.69
COL3A1P02461 PRSS8-201ENST00000317508 1872 ntAPPRIS P1 TSL 1 (best) BASIC19.35■□□□□ 0.69
COL3A1P02461 TOB1-AS1-201ENST00000416263 1351 ntTSL 1 (best) BASIC19.35■□□□□ 0.69
COL3A1P02461 RIMS4-201ENST00000372851 5203 ntAPPRIS P3 TSL 1 (best) BASIC19.35■□□□□ 0.69
COL3A1P02461 SLC39A1-204ENST00000368623 2723 ntAPPRIS P1 TSL 1 (best) BASIC19.35■□□□□ 0.69
COL3A1P02461 MED16-203ENST00000325464 2922 ntAPPRIS P2 TSL 5 BASIC19.35■□□□□ 0.69
COL3A1P02461 AL031280.1-201ENST00000436991 2224 ntTSL 2 BASIC19.35■□□□□ 0.69
COL3A1P02461 SLC26A11-202ENST00000411502 2872 ntAPPRIS P1 TSL 2 BASIC19.35■□□□□ 0.69
COL3A1P02461 CTNND2-202ENST00000458100 1962 ntTSL 5 BASIC19.35■□□□□ 0.69
COL3A1P02461 OARD1-203ENST00000463088 1515 ntAPPRIS P1 TSL 2 BASIC19.35■□□□□ 0.69
COL3A1P02461 GNAI2-201ENST00000266027 2169 ntTSL 2 BASIC19.35■□□□□ 0.69
COL3A1P02461 CD8A-203ENST00000409511 3048 ntAPPRIS P4 TSL 2 BASIC19.35■□□□□ 0.69
COL3A1P02461 AZIN1-201ENST00000337198 4721 ntAPPRIS P1 TSL 1 (best) BASIC19.35■□□□□ 0.69
COL3A1P02461 NCR3-202ENST00000376071 541 ntTSL 5 BASIC19.35■□□□□ 0.69
COL3A1P02461 LINC01118-202ENST00000409912 1023 ntTSL 1 (best) BASIC19.35■□□□□ 0.69
COL3A1P02461 Z82214.1-201ENST00000419643 988 ntTSL 3 BASIC19.35■□□□□ 0.69
COL3A1P02461 FKBP11-202ENST00000444214 630 ntTSL 2 BASIC19.35■□□□□ 0.69
COL3A1P02461 MAPKAPK3-203ENST00000446044 2988 ntAPPRIS P1 TSL 1 (best) BASIC19.35■□□□□ 0.69
COL3A1P02461 LINC02380-201ENST00000510956 1038 ntTSL 1 (best) BASIC19.35■□□□□ 0.69
COL3A1P02461 CCNC-217ENST00000523985 958 ntTSL 2 BASIC19.35■□□□□ 0.69
COL3A1P02461 TP53AIP1-204ENST00000530777 363 ntAPPRIS ALT2 TSL 1 (best) BASIC19.35■□□□□ 0.69
COL3A1P02461 AC093752.3-201ENST00000567343 901 ntBASIC19.35■□□□□ 0.69
COL3A1P02461 CCDC144NL-AS1-209ENST00000577860 884 ntTSL 5 BASIC19.35■□□□□ 0.69
COL3A1P02461 NAP1L6-202ENST00000641404 1222 ntBASIC19.35■□□□□ 0.69
COL3A1P02461 SLC38A4-201ENST00000266579 2728 ntAPPRIS P1 TSL 1 (best) BASIC19.34■□□□□ 0.69
COL3A1P02461 ZNF7-203ENST00000525266 1874 ntTSL 2 BASIC19.34■□□□□ 0.69
COL3A1P02461 KIAA0513-207ENST00000567328 1873 ntTSL 1 (best) BASIC19.34■□□□□ 0.69
COL3A1P02461 SPOPL-201ENST00000280098 6025 ntAPPRIS P1 TSL 1 (best) BASIC19.34■□□□□ 0.69
COL3A1P02461 AC232323.1-201ENST00000540724 2099 ntBASIC19.34■□□□□ 0.69
COL3A1P02461 PIK3IP1-201ENST00000215912 2467 ntAPPRIS P1 TSL 1 (best) BASIC19.34■□□□□ 0.69
COL3A1P02461 PLEKHN1-202ENST00000379409 2455 ntAPPRIS ALT2 TSL 2 BASIC19.34■□□□□ 0.69
COL3A1P02461 LYSMD4-204ENST00000409796 2672 ntAPPRIS P1 TSL 1 (best) BASIC19.34■□□□□ 0.69
COL3A1P02461 HECTD2-204ENST00000446394 4939 ntTSL 2 BASIC19.34■□□□□ 0.69
COL3A1P02461 CCDC197-206ENST00000640978 1429 ntAPPRIS ALT2 TSL 5 BASIC19.34■□□□□ 0.69
COL3A1P02461 CNN1-201ENST00000252456 1633 ntAPPRIS P1 TSL 1 (best) BASIC19.34■□□□□ 0.69
COL3A1P02461 FGGY-203ENST00000371212 1640 ntTSL 2 BASIC19.34■□□□□ 0.69
COL3A1P02461 PKD2-201ENST00000237596 5056 ntAPPRIS P1 TSL 1 (best) BASIC19.34■□□□□ 0.69
COL3A1P02461 SEPT9-228ENST00000590294 2816 ntAPPRIS ALT2 TSL 5 BASIC19.34■□□□□ 0.69
COL3A1P02461 CLIP2-202ENST00000361545 5445 ntTSL 1 (best) BASIC19.34■□□□□ 0.69
COL3A1P02461 CHST14-201ENST00000306243 3574 ntAPPRIS P1 BASIC19.34■□□□□ 0.69
COL3A1P02461 PA2G4-201ENST00000303305 2577 ntAPPRIS P1 TSL 1 (best) BASIC19.34■□□□□ 0.69
COL3A1P02461 VDAC1-201ENST00000265333 1953 ntAPPRIS P1 TSL 2 BASIC19.34■□□□□ 0.69
COL3A1P02461 TNFSF13-201ENST00000338784 1971 ntAPPRIS P3 TSL 1 (best) BASIC19.34■□□□□ 0.69
COL3A1P02461 LINC00665-205ENST00000585356 1557 ntTSL 2 BASIC19.34■□□□□ 0.69
COL3A1P02461 TAF12-201ENST00000263974 1359 ntAPPRIS P1 TSL 1 (best) BASIC19.34■□□□□ 0.69
COL3A1P02461 ATP2A2-201ENST00000308664 4453 ntAPPRIS ALT1 TSL 1 (best) BASIC19.34■□□□□ 0.69
COL3A1P02461 DYRK2-202ENST00000344096 8912 ntAPPRIS P4 TSL 1 (best) BASIC19.34■□□□□ 0.69
COL3A1P02461 ATP2A3-201ENST00000309890 4826 ntTSL 5 BASIC19.34■□□□□ 0.69
COL3A1P02461 BX640514.1-201ENST00000583223 1918 ntBASIC19.34■□□□□ 0.69
COL3A1P02461 HIF3A-206ENST00000472815 1709 ntTSL 2 BASIC19.34■□□□□ 0.69
COL3A1P02461 PLIN1-201ENST00000300055 2953 ntAPPRIS P1 TSL 1 (best) BASIC19.34■□□□□ 0.69
Retrieved 100 of 98,524 protein–RNA pairs in 42.8 ms