Protein–RNA interactions for Protein: O43196

MSH5, MutS protein homolog 5, humanhuman

Predictions only

Length 834 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
MSH5O43196 NFATC1-218ENST00000592223 2531 ntAPPRIS ALT2 TSL 1 (best) BASIC21.31■■□□□ 1
MSH5O43196 LRCH2-201ENST00000317135 4929 ntAPPRIS P3 TSL 1 (best) BASIC21.31■■□□□ 1
MSH5O43196 GOLGA8DP-202ENST00000341390 2184 ntBASIC21.31■■□□□ 1
MSH5O43196 SEPT8-205ENST00000378701 1817 ntTSL 2 BASIC21.31■■□□□ 1
MSH5O43196 DIAPH2-205ENST00000373061 4983 ntAPPRIS ALT2 TSL 5 BASIC21.31■■□□□ 1
MSH5O43196 CHCHD3-201ENST00000262570 1598 ntAPPRIS P1 TSL 1 (best) BASIC21.31■■□□□ 1
MSH5O43196 SPPL2B-207ENST00000610743 2583 ntAPPRIS ALT2 TSL 1 (best) BASIC21.31■■□□□ 1
MSH5O43196 GPR161-204ENST00000367838 2676 ntAPPRIS P1 TSL 1 (best) BASIC21.31■■□□□ 1
MSH5O43196 IDH3G-212ENST00000619865 1339 ntTSL 5 BASIC21.3■■□□□ 1
MSH5O43196 LRRFIP2-205ENST00000421276 2522 ntTSL 2 BASIC21.3■■□□□ 1
MSH5O43196 ISCA2-204ENST00000556816 2626 ntAPPRIS P1 TSL 1 (best) BASIC21.3■■□□□ 1
MSH5O43196 POLR2B-205ENST00000441246 3839 ntTSL 2 BASIC21.3■■□□□ 1
MSH5O43196 BCAR1-204ENST00000418647 3387 ntAPPRIS ALT2 TSL 2 BASIC21.3■■□□□ 1
MSH5O43196 NR4A2-203ENST00000409108 1735 ntTSL 5 BASIC21.3■■□□□ 1
MSH5O43196 NR4A3-202ENST00000338488 2588 ntTSL 1 (best) BASIC21.3■■□□□ 1
MSH5O43196 EHMT1-236ENST00000637161 5049 ntAPPRIS ALT2 TSL 5 BASIC21.3■■□□□ 1
MSH5O43196 NKIRAS1-206ENST00000425478 2014 ntAPPRIS P2 TSL 1 (best) BASIC21.3■■□□□ 1
MSH5O43196 C7orf43-207ENST00000457641 2005 ntTSL 5 BASIC21.3■■□□□ 1
MSH5O43196 LCN15-201ENST00000316144 762 ntAPPRIS P1 TSL 1 (best) BASIC21.3■■□□□ 1
MSH5O43196 RESP18-201ENST00000333527 795 ntAPPRIS P2 TSL 1 (best) BASIC21.3■■□□□ 1
MSH5O43196 SLC9B1P2-201ENST00000398120 1184 ntBASIC21.3■■□□□ 1
MSH5O43196 AC104777.3-201ENST00000416350 545 ntTSL 3 BASIC21.3■■□□□ 1
MSH5O43196 AC093459.1-202ENST00000438963 768 ntTSL 3 BASIC21.3■■□□□ 1
MSH5O43196 LINC00229-201ENST00000443783 500 ntTSL 2 BASIC21.3■■□□□ 1
MSH5O43196 AL157884.3-201ENST00000448273 1184 ntBASIC21.3■■□□□ 1
MSH5O43196 NECAP2-203ENST00000457722 935 ntTSL 2 BASIC21.3■■□□□ 1
MSH5O43196 AC116345.1-202ENST00000513379 941 ntTSL 5 BASIC21.3■■□□□ 1
MSH5O43196 AP001107.3-201ENST00000534065 544 ntTSL 4 BASIC21.3■■□□□ 1
MSH5O43196 BMS1P8-201ENST00000565049 1178 ntBASIC21.3■■□□□ 1
MSH5O43196 C18orf32-202ENST00000582392 714 ntAPPRIS P1 TSL 3 BASIC21.3■■□□□ 1
MSH5O43196 AC011492.1-201ENST00000600023 315 ntBASIC21.3■■□□□ 1
MSH5O43196 AC097717.1-225ENST00000600829 709 ntTSL 5 BASIC21.3■■□□□ 1
MSH5O43196 DUSP13-212ENST00000605915 1015 ntTSL 5 BASIC21.3■■□□□ 1
MSH5O43196 AC097534.2-204ENST00000608892 284 ntTSL 2 BASIC21.3■■□□□ 1
MSH5O43196 AC024941.1-201ENST00000612250 334 ntBASIC21.3■■□□□ 1
MSH5O43196 AC079414.3-201ENST00000612986 1090 ntBASIC21.3■■□□□ 1
MSH5O43196 TBC1D3D-201ENST00000616101 2116 ntAPPRIS P1 TSL 1 (best) BASIC21.3■■□□□ 1
MSH5O43196 TBC1D3K-201ENST00000620247 2116 ntAPPRIS P1 TSL 1 (best) BASIC21.3■■□□□ 1
MSH5O43196 ZCCHC9-202ENST00000380199 1372 ntAPPRIS P1 TSL 1 (best) BASIC21.3■■□□□ 1
MSH5O43196 GFY-202ENST00000610896 1557 ntAPPRIS P1 TSL 2 BASIC21.3■■□□□ 1
MSH5O43196 CICP14-201ENST00000629111 2732 ntBASIC21.3■■□□□ 1
MSH5O43196 LTBP4-203ENST00000308370 4948 ntAPPRIS P4 TSL 1 (best) BASIC21.3■■□□□ 1
MSH5O43196 ZNF219-202ENST00000421093 2908 ntAPPRIS P1 TSL 1 (best) BASIC21.3■■□□□ 1
MSH5O43196 ANHX-201ENST00000419717 1765 ntAPPRIS P1 TSL 2 BASIC21.3■■□□□ 1
MSH5O43196 ALDH3A1-205ENST00000444455 1771 ntAPPRIS P1 TSL 5 BASIC21.3■■□□□ 1
MSH5O43196 SULT1C4-201ENST00000272452 1860 ntAPPRIS P1 TSL 1 (best) BASIC21.3■■□□□ 1
MSH5O43196 NPM2-203ENST00000397940 1874 ntAPPRIS P2 TSL 2 BASIC21.3■■□□□ 1
MSH5O43196 LTBP4-205ENST00000396819 4764 ntAPPRIS ALT2 TSL 1 (best) BASIC21.3■■□□□ 1
MSH5O43196 EEPD1-205ENST00000534978 2769 ntAPPRIS P1 TSL 2 BASIC21.3■■□□□ 1
MSH5O43196 C18orf63-201ENST00000579455 5127 ntAPPRIS P1 TSL 1 (best) BASIC21.3■■□□□ 1
MSH5O43196 CYB561-203ENST00000392976 3151 ntAPPRIS P1 TSL 3 BASIC21.3■■□□□ 1
MSH5O43196 HEPN1-201ENST00000408930 1434 ntAPPRIS P1 BASIC21.29■■□□□ 1
MSH5O43196 AC009779.2-201ENST00000552576 1443 ntTSL 4 BASIC21.29■■□□□ 1
MSH5O43196 LINC00029-201ENST00000370341 1631 ntTSL 1 (best) BASIC21.29■■□□□ 1
MSH5O43196 PLD3-201ENST00000356508 1906 ntAPPRIS P1 TSL 1 (best) BASIC21.29■■□□□ 1
MSH5O43196 GGT6-201ENST00000301395 2534 ntTSL 2 BASIC21.29■■□□□ 1
MSH5O43196 ARVCF-202ENST00000401994 2700 ntTSL 5 BASIC21.29■■□□□ 1
MSH5O43196 PLCB1-203ENST00000378641 7323 ntTSL 1 (best) BASIC21.29■■□□□ 1
MSH5O43196 LINC01565-201ENST00000356020 2697 ntTSL 2 BASIC21.29■■□□□ 1
MSH5O43196 POFUT2-214ENST00000615172 2472 ntTSL 1 (best) BASIC21.29■■□□□ 1
MSH5O43196 PPT1-215ENST00000641471 2368 ntBASIC21.29■■□□□ 1
MSH5O43196 NF1-211ENST00000487476 2265 ntTSL 1 (best) BASIC21.29■■□□□ 1
MSH5O43196 DBNDD1-202ENST00000304733 2081 ntTSL 1 (best) BASIC21.29■■□□□ 1
MSH5O43196 FTSJ1-202ENST00000348411 1892 ntAPPRIS P4 TSL 1 (best) BASIC21.29■■□□□ 1
MSH5O43196 SLC22A20-204ENST00000530038 1673 ntBASIC21.29■■□□□ 1
MSH5O43196 PYHIN1-204ENST00000392252 1597 ntAPPRIS ALT2 TSL 1 (best) BASIC21.29■■□□□ 1
MSH5O43196 BAGE2-202ENST00000474011 1482 ntTSL 2 BASIC21.29■■□□□ 1
MSH5O43196 LINC00690-201ENST00000429949 1365 ntTSL 1 (best) BASIC21.29■■□□□ 1
MSH5O43196 REG1B-201ENST00000305089 767 ntAPPRIS P1 TSL 1 (best) BASIC21.29■■□□□ 1
MSH5O43196 TAC1-201ENST00000319273 1239 ntAPPRIS P4 TSL 1 (best) BASIC21.29■■□□□ 1
MSH5O43196 SIRPB3P-201ENST00000340424 1216 ntBASIC21.29■■□□□ 1
MSH5O43196 IL6ST-204ENST00000381293 612 ntTSL 1 (best) BASIC21.29■■□□□ 1
MSH5O43196 OSM-203ENST00000403463 464 ntTSL 3 BASIC21.29■■□□□ 1
MSH5O43196 MIR1302-8-201ENST00000408342 128 ntBASIC21.29■■□□□ 1
MSH5O43196 AC087499.6-201ENST00000411576 835 ntBASIC21.29■■□□□ 1
MSH5O43196 AL353597.1-201ENST00000414875 998 ntTSL 5 BASIC21.29■■□□□ 1
MSH5O43196 COPS6-202ENST00000418625 1107 ntAPPRIS ALT2 TSL 5 BASIC21.29■■□□□ 1
MSH5O43196 AL031770.1-201ENST00000430842 851 ntTSL 2 BASIC21.29■■□□□ 1
MSH5O43196 POU6F2-AS1-201ENST00000433519 381 ntTSL 3 BASIC21.29■■□□□ 1
MSH5O43196 AL121987.1-201ENST00000435580 645 ntTSL 3 BASIC21.29■■□□□ 1
MSH5O43196 AL121753.1-201ENST00000444717 529 ntAPPRIS P1 TSL 3 BASIC21.29■■□□□ 1
MSH5O43196 NPM1P19-201ENST00000450070 712 ntBASIC21.29■■□□□ 1
MSH5O43196 MPZL1-209ENST00000474859 630 ntTSL 1 (best) BASIC21.29■■□□□ 1
MSH5O43196 MTCYBP35-201ENST00000503630 1137 ntBASIC21.29■■□□□ 1
MSH5O43196 AP003717.2-201ENST00000534962 898 ntBASIC21.29■■□□□ 1
MSH5O43196 AC129507.3-201ENST00000571512 913 ntTSL 2 BASIC21.29■■□□□ 1
MSH5O43196 AC015845.1-201ENST00000579285 335 ntTSL 3 BASIC21.29■■□□□ 1
MSH5O43196 LINC01775-201ENST00000587826 371 ntTSL 1 (best) BASIC21.29■■□□□ 1
MSH5O43196 AP000322.3-201ENST00000608665 388 ntBASIC21.29■■□□□ 1
MSH5O43196 SNX12-206ENST00000622259 661 ntTSL 5 BASIC21.29■■□□□ 1
MSH5O43196 PIGA-209ENST00000634582 965 ntTSL 2 BASIC21.29■■□□□ 1
MSH5O43196 AL078582.1-201ENST00000641922 511 ntBASIC21.29■■□□□ 1
MSH5O43196 CXADR-201ENST00000284878 6254 ntAPPRIS P3 TSL 1 (best) BASIC21.29■■□□□ 1
MSH5O43196 TCP10-202ENST00000397829 2141 ntAPPRIS P2 TSL 1 (best) BASIC21.29■■□□□ 1
MSH5O43196 ZNF662-201ENST00000328199 3186 ntAPPRIS P1 TSL 5 BASIC21.29■■□□□ 1
MSH5O43196 AP000866.1-201ENST00000499143 2886 ntTSL 1 (best) BASIC21.29■■□□□ 1
MSH5O43196 C1QTNF1-208ENST00000580474 1600 ntAPPRIS P1 TSL 1 (best) BASIC21.29■■□□□ 1
MSH5O43196 SARS2-212ENST00000600042 1630 ntTSL 2 BASIC21.29■■□□□ 1
MSH5O43196 GLIPR2-205ENST00000619700 1645 ntTSL 3 BASIC21.29■■□□□ 1
MSH5O43196 ABCB8-221ENST00000498578 2350 ntTSL 1 (best) BASIC21.29■■□□□ 1
Retrieved 100 of 98,524 protein–RNA pairs in 52.3 ms