Protein–RNA interactions for Protein: Q96NR3

PTCHD1, Patched domain-containing protein 1, humanhuman

Predictions only

Length 888 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PTCHD1Q96NR3 PAFAH1B3-202ENST00000538771 1098 ntAPPRIS P1 TSL 2 BASIC14.19□□□□□ -0.14
PTCHD1Q96NR3 VASH1-AS1-201ENST00000554058 871 ntTSL 3 BASIC14.19□□□□□ -0.14
PTCHD1Q96NR3 AL355102.5-201ENST00000554769 572 ntTSL 4 BASIC14.19□□□□□ -0.14
PTCHD1Q96NR3 MIR22HG-212ENST00000577164 931 ntTSL 4 BASIC14.19□□□□□ -0.14
PTCHD1Q96NR3 MIR4259-201ENST00000584466 101 ntBASIC14.19□□□□□ -0.14
PTCHD1Q96NR3 RPS15-202ENST00000585665 467 ntTSL 3 BASIC14.19□□□□□ -0.14
PTCHD1Q96NR3 CRHBP-201ENST00000274368 1980 ntAPPRIS P1 TSL 1 (best) BASIC14.19□□□□□ -0.14
PTCHD1Q96NR3 VRK3-207ENST00000594092 1831 ntAPPRIS ALT2 TSL 1 (best) BASIC14.19□□□□□ -0.14
PTCHD1Q96NR3 DUSP11-201ENST00000272444 1653 ntAPPRIS P1 TSL 1 (best) BASIC14.19□□□□□ -0.14
PTCHD1Q96NR3 SCLT1-209ENST00000511426 1696 ntAPPRIS ALT2 TSL 1 (best) BASIC14.19□□□□□ -0.14
PTCHD1Q96NR3 ZNF497-201ENST00000311044 3468 ntAPPRIS P1 TSL 2 BASIC14.19□□□□□ -0.14
PTCHD1Q96NR3 TSC1-202ENST00000403810 1507 ntTSL 1 (best) BASIC14.19□□□□□ -0.14
PTCHD1Q96NR3 FLI1-207ENST00000534087 3859 ntTSL 2 BASIC14.19□□□□□ -0.14
PTCHD1Q96NR3 PHYHD1-202ENST00000353176 1374 ntTSL 5 BASIC14.19□□□□□ -0.14
PTCHD1Q96NR3 ZBED1P1-201ENST00000502364 1930 ntBASIC14.19□□□□□ -0.14
PTCHD1Q96NR3 TMEM115-201ENST00000266025 2197 ntAPPRIS P1 TSL 1 (best) BASIC14.19□□□□□ -0.14
PTCHD1Q96NR3 SYMPK-213ENST00000599460 5449 ntTSL 1 (best) BASIC14.19□□□□□ -0.14
PTCHD1Q96NR3 CLDN22-201ENST00000323319 2581 ntAPPRIS P1 BASIC14.19□□□□□ -0.14
PTCHD1Q96NR3 NTRK3-203ENST00000357724 2980 ntTSL 5 BASIC14.19□□□□□ -0.14
PTCHD1Q96NR3 RBM14-201ENST00000310137 2828 ntAPPRIS P1 TSL 1 (best) BASIC14.19□□□□□ -0.14
PTCHD1Q96NR3 RIMS1-216ENST00000521978 5079 ntAPPRIS P1 TSL 1 (best) BASIC14.18□□□□□ -0.14
PTCHD1Q96NR3 AFF4-201ENST00000265343 9552 ntAPPRIS P1 TSL 1 (best) BASIC14.18□□□□□ -0.14
PTCHD1Q96NR3 MAGEA2B-202ENST00000370293 1714 ntAPPRIS P1 TSL 2 BASIC14.18□□□□□ -0.14
PTCHD1Q96NR3 ICAM2-201ENST00000412356 1334 ntAPPRIS P1 TSL 5 BASIC14.18□□□□□ -0.14
PTCHD1Q96NR3 BCAR1-207ENST00000538440 3192 ntAPPRIS ALT2 TSL 2 BASIC14.18□□□□□ -0.14
PTCHD1Q96NR3 VWA2-202ENST00000392982 2794 ntAPPRIS P1 TSL 1 (best) BASIC14.18□□□□□ -0.14
PTCHD1Q96NR3 C3orf62-201ENST00000343010 4235 ntAPPRIS P2 TSL 1 (best) BASIC14.18□□□□□ -0.14
PTCHD1Q96NR3 RPS23-201ENST00000296674 3437 ntAPPRIS P1 TSL 1 (best) BASIC14.18□□□□□ -0.14
PTCHD1Q96NR3 ARHGEF5-201ENST00000056217 5544 ntAPPRIS P2 TSL 1 (best) BASIC14.18□□□□□ -0.14
PTCHD1Q96NR3 SOCS5-202ENST00000394861 4058 ntAPPRIS P1 TSL 1 (best) BASIC14.18□□□□□ -0.14
PTCHD1Q96NR3 RWDD4-205ENST00000510968 1551 ntTSL 4 BASIC14.18□□□□□ -0.14
PTCHD1Q96NR3 PRSS54-201ENST00000219301 1810 ntAPPRIS P1 TSL 5 BASIC14.18□□□□□ -0.14
PTCHD1Q96NR3 HDHD3-201ENST00000238379 1834 ntAPPRIS P1 TSL 1 (best) BASIC14.18□□□□□ -0.14
PTCHD1Q96NR3 PCBP2-202ENST00000359462 1814 ntAPPRIS ALT1 TSL 1 (best) BASIC14.18□□□□□ -0.14
PTCHD1Q96NR3 DDIAS-203ENST00000525361 1830 ntAPPRIS ALT2 TSL 2 BASIC14.18□□□□□ -0.14
PTCHD1Q96NR3 GPN1-212ENST00000616939 1832 ntAPPRIS P2 TSL 1 (best) BASIC14.18□□□□□ -0.14
PTCHD1Q96NR3 APBB1-219ENST00000608704 2095 ntTSL 5 BASIC14.18□□□□□ -0.14
PTCHD1Q96NR3 DTNB-228ENST00000496972 2328 ntTSL 2 BASIC14.18□□□□□ -0.14
PTCHD1Q96NR3 FCHO1-206ENST00000594202 3214 ntTSL 5 BASIC14.18□□□□□ -0.14
PTCHD1Q96NR3 AC007686.3-201ENST00000619017 3487 ntBASIC14.18□□□□□ -0.14
PTCHD1Q96NR3 SALL3-205ENST00000575389 3996 ntTSL 5 BASIC14.18□□□□□ -0.14
PTCHD1Q96NR3 AC007743.1-201ENST00000596663 3075 ntTSL 2 BASIC14.18□□□□□ -0.14
PTCHD1Q96NR3 CIAPIN1-201ENST00000394391 2182 ntAPPRIS P1 TSL 1 (best) BASIC14.18□□□□□ -0.14
PTCHD1Q96NR3 CDH24-202ENST00000397359 3552 ntTSL 5 BASIC14.18□□□□□ -0.14
PTCHD1Q96NR3 DMAC2-202ENST00000301183 1134 ntTSL 2 BASIC14.18□□□□□ -0.14
PTCHD1Q96NR3 AC006001.1-201ENST00000325130 474 ntBASIC14.18□□□□□ -0.14
PTCHD1Q96NR3 UBE2G2-201ENST00000330942 721 ntTSL 3 BASIC14.18□□□□□ -0.14
PTCHD1Q96NR3 PLAC9-201ENST00000372263 785 ntAPPRIS P2 TSL 1 (best) BASIC14.18□□□□□ -0.14
PTCHD1Q96NR3 PHACTR1-202ENST00000379329 707 ntTSL 2 BASIC14.18□□□□□ -0.14
PTCHD1Q96NR3 AL445430.1-201ENST00000419796 699 ntTSL 1 (best) BASIC14.18□□□□□ -0.14
PTCHD1Q96NR3 AL355483.2-201ENST00000421637 675 ntTSL 3 BASIC14.18□□□□□ -0.14
PTCHD1Q96NR3 AL354761.2-202ENST00000430816 546 ntAPPRIS P1 TSL 5 BASIC14.18□□□□□ -0.14
PTCHD1Q96NR3 C1QTNF6-203ENST00000434784 975 ntTSL 3 BASIC14.18□□□□□ -0.14
PTCHD1Q96NR3 DGCR5-204ENST00000440005 1299 ntTSL 1 (best) BASIC14.18□□□□□ -0.14
PTCHD1Q96NR3 FHIT-208ENST00000492590 1081 ntAPPRIS P1 TSL 1 (best) BASIC14.18□□□□□ -0.14
PTCHD1Q96NR3 AP002992.1-201ENST00000527519 491 ntTSL 3 BASIC14.18□□□□□ -0.14
PTCHD1Q96NR3 CX3CL1-203ENST00000564948 563 ntTSL 3 BASIC14.18□□□□□ -0.14
PTCHD1Q96NR3 NAA38-206ENST00000576384 424 ntTSL 2 BASIC14.18□□□□□ -0.14
PTCHD1Q96NR3 DNAJC5-201ENST00000360864 5213 ntAPPRIS P1 TSL 1 (best) BASIC14.18□□□□□ -0.14
PTCHD1Q96NR3 MAP1S-201ENST00000324096 3419 ntAPPRIS P3 TSL 1 (best) BASIC14.18□□□□□ -0.14
PTCHD1Q96NR3 ADAMTS14-202ENST00000373208 5269 ntAPPRIS P4 TSL 2 BASIC14.18□□□□□ -0.14
PTCHD1Q96NR3 HLA-DQB1-205ENST00000434651 1642 ntAPPRIS P1 BASIC14.18□□□□□ -0.14
PTCHD1Q96NR3 FOXB1-201ENST00000396057 2957 ntAPPRIS P1 TSL 1 (best) BASIC14.18□□□□□ -0.14
PTCHD1Q96NR3 MMP25-201ENST00000336577 3554 ntAPPRIS P1 TSL 1 (best) BASIC14.18□□□□□ -0.14
PTCHD1Q96NR3 LRRC6-205ENST00000519595 1736 ntAPPRIS ALT1 TSL 1 (best) BASIC14.18□□□□□ -0.14
PTCHD1Q96NR3 MAGEA2-204ENST00000611674 1728 ntAPPRIS P1 TSL 2 BASIC14.18□□□□□ -0.14
PTCHD1Q96NR3 NUTM2D-202ENST00000412718 5543 ntAPPRIS ALT2 TSL 5 BASIC14.18□□□□□ -0.14
PTCHD1Q96NR3 CNOT9-208ENST00000542068 3259 ntAPPRIS P1 TSL 5 BASIC14.17□□□□□ -0.14
PTCHD1Q96NR3 MBD1-211ENST00000585595 2179 ntAPPRIS ALT2 TSL 2 BASIC14.17□□□□□ -0.14
PTCHD1Q96NR3 CHST10-203ENST00000409701 1338 ntAPPRIS P1 TSL 1 (best) BASIC14.17□□□□□ -0.14
PTCHD1Q96NR3 ZSCAN30-212ENST00000639929 1305 ntTSL 5 BASIC14.17□□□□□ -0.14
PTCHD1Q96NR3 ATP11B-201ENST00000323116 7325 ntAPPRIS P1 TSL 2 BASIC14.17□□□□□ -0.14
PTCHD1Q96NR3 OR2I1P-210ENST00000642037 4691 ntBASIC14.17□□□□□ -0.14
PTCHD1Q96NR3 SNX5-202ENST00000377768 2288 ntAPPRIS P1 TSL 1 (best) BASIC14.17□□□□□ -0.14
PTCHD1Q96NR3 RPTOR-203ENST00000570891 2286 ntTSL 1 (best) BASIC14.17□□□□□ -0.14
PTCHD1Q96NR3 TSEN2-201ENST00000284995 2381 ntAPPRIS P1 TSL 1 (best) BASIC14.17□□□□□ -0.14
PTCHD1Q96NR3 EP400-203ENST00000333577 3092 ntTSL 1 (best) BASIC14.17□□□□□ -0.14
PTCHD1Q96NR3 PIP5K1A-202ENST00000368888 2134 ntAPPRIS ALT2 TSL 1 (best) BASIC14.17□□□□□ -0.14
PTCHD1Q96NR3 AL354989.2-201ENST00000435838 1540 ntBASIC14.17□□□□□ -0.14
PTCHD1Q96NR3 SMPDL3A-201ENST00000368440 1851 ntAPPRIS P1 TSL 1 (best) BASIC14.17□□□□□ -0.14
PTCHD1Q96NR3 HENMT1-202ENST00000370032 1874 ntAPPRIS P2 TSL 1 (best) BASIC14.17□□□□□ -0.14
PTCHD1Q96NR3 ANXA8L1-208ENST00000622769 1861 ntTSL 1 (best) BASIC14.17□□□□□ -0.14
PTCHD1Q96NR3 GLIDR-202ENST00000625350 2588 ntTSL 1 (best) BASIC14.17□□□□□ -0.14
PTCHD1Q96NR3 ZFR2-201ENST00000262961 4756 ntAPPRIS P1 TSL 5 BASIC14.17□□□□□ -0.14
PTCHD1Q96NR3 GRN-201ENST00000053867 2342 ntAPPRIS P1 TSL 1 (best) BASIC14.17□□□□□ -0.14
PTCHD1Q96NR3 AC005264.1-201ENST00000587587 2319 ntTSL 2 BASIC14.17□□□□□ -0.14
PTCHD1Q96NR3 PNRC1-203ENST00000369472 816 ntTSL 2 BASIC14.17□□□□□ -0.14
PTCHD1Q96NR3 MIR1202-201ENST00000408529 83 ntBASIC14.17□□□□□ -0.14
PTCHD1Q96NR3 U82695.1-202ENST00000428676 700 ntTSL 2 BASIC14.17□□□□□ -0.14
PTCHD1Q96NR3 HLA-V-201ENST00000429037 534 ntBASIC14.17□□□□□ -0.14
PTCHD1Q96NR3 AL589986.1-201ENST00000429230 789 ntTSL 5 BASIC14.17□□□□□ -0.14
PTCHD1Q96NR3 AC026954.1-201ENST00000429771 1293 ntBASIC14.17□□□□□ -0.14
PTCHD1Q96NR3 DICER1-AS1-202ENST00000439819 810 ntTSL 3 BASIC14.17□□□□□ -0.14
PTCHD1Q96NR3 CSF2RBP1-201ENST00000447905 391 ntBASIC14.17□□□□□ -0.14
PTCHD1Q96NR3 ELFN1-AS1-202ENST00000453348 637 ntTSL 1 (best) BASIC14.17□□□□□ -0.14
PTCHD1Q96NR3 LLPH-AS1-201ENST00000510317 623 ntTSL 4 BASIC14.17□□□□□ -0.14
PTCHD1Q96NR3 C1RL-212ENST00000545337 813 ntTSL 1 (best) BASIC14.17□□□□□ -0.14
PTCHD1Q96NR3 AP001453.3-201ENST00000545800 853 ntTSL 3 BASIC14.17□□□□□ -0.14
PTCHD1Q96NR3 AC004466.1-201ENST00000599515 1080 ntBASIC14.17□□□□□ -0.14
PTCHD1Q96NR3 CCL5-202ENST00000605140 1244 ntAPPRIS P1 TSL 5 BASIC14.17□□□□□ -0.14
Retrieved 100 of 98,524 protein–RNA pairs in 35.9 ms