Protein–RNA interactions for Protein: Q96GC9

VMP1, Vacuole membrane protein 1, humanhuman

Predictions only

Length 406 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VMP1Q96GC9 LINC01663-201ENST00000614596 535 ntTSL 5 BASIC14.48□□□□□ -0.09
VMP1Q96GC9 AL033527.5-201ENST00000641382 801 ntBASIC14.48□□□□□ -0.09
VMP1Q96GC9 C1QTNF2-201ENST00000393975 2414 ntAPPRIS P1 TSL 1 (best) BASIC14.48□□□□□ -0.09
VMP1Q96GC9 SMARCA2-204ENST00000357248 5855 ntAPPRIS P1 TSL 5 BASIC14.48□□□□□ -0.09
VMP1Q96GC9 ASTN2-206ENST00000361477 4001 ntTSL 5 BASIC14.48□□□□□ -0.09
VMP1Q96GC9 FBXO15-201ENST00000419743 1708 ntAPPRIS P2 TSL 2 BASIC14.48□□□□□ -0.09
VMP1Q96GC9 IQCE-201ENST00000325979 2179 ntAPPRIS ALT2 TSL 5 BASIC14.48□□□□□ -0.09
VMP1Q96GC9 HSDL1-201ENST00000219439 3519 ntAPPRIS P1 TSL 1 (best) BASIC14.48□□□□□ -0.09
VMP1Q96GC9 FBP1-203ENST00000415431 1487 ntAPPRIS P1 TSL 2 BASIC14.48□□□□□ -0.09
VMP1Q96GC9 AKAP1-201ENST00000314126 2380 ntTSL 1 (best) BASIC14.48□□□□□ -0.09
VMP1Q96GC9 MCL1-202ENST00000369026 3932 ntAPPRIS P1 TSL 1 (best) BASIC14.48□□□□□ -0.09
VMP1Q96GC9 PIGG-202ENST00000383028 2787 ntTSL 1 (best) BASIC14.48□□□□□ -0.09
VMP1Q96GC9 RABL2B-204ENST00000395593 2341 ntAPPRIS ALT2 TSL 1 (best) BASIC14.48□□□□□ -0.09
VMP1Q96GC9 ACSM2B-207ENST00000565232 2322 ntAPPRIS P1 TSL 2 BASIC14.48□□□□□ -0.09
VMP1Q96GC9 COL20A1-203ENST00000422202 8097 ntAPPRIS ALT2 TSL 5 BASIC14.48□□□□□ -0.09
VMP1Q96GC9 GTF2H2C-210ENST00000510979 2952 ntAPPRIS P1 TSL 1 (best) BASIC14.48□□□□□ -0.09
VMP1Q96GC9 TRIM41-201ENST00000315073 3637 ntAPPRIS P1 TSL 1 (best) BASIC14.48□□□□□ -0.09
VMP1Q96GC9 TET2-207ENST00000513237 10166 ntAPPRIS ALT2 TSL 1 (best) BASIC14.48□□□□□ -0.09
VMP1Q96GC9 TET2-209ENST00000540549 10166 ntAPPRIS P2 TSL 1 (best) BASIC14.48□□□□□ -0.09
VMP1Q96GC9 KLHDC7A-201ENST00000400664 5145 ntAPPRIS P1 BASIC14.48□□□□□ -0.09
VMP1Q96GC9 CHIA-201ENST00000343320 1624 ntAPPRIS P1 TSL 5 BASIC14.48□□□□□ -0.09
VMP1Q96GC9 CTD-2194D22.4-201ENST00000514569 1635 ntTSL 1 (best) BASIC14.48□□□□□ -0.09
VMP1Q96GC9 CR383656.2-201ENST00000548656 2254 ntBASIC14.48□□□□□ -0.09
VMP1Q96GC9 AC004223.3-201ENST00000593039 1638 ntAPPRIS P5 TSL 2 BASIC14.48□□□□□ -0.09
VMP1Q96GC9 KLHL26-201ENST00000300976 4407 ntAPPRIS P1 TSL 1 (best) BASIC14.48□□□□□ -0.09
VMP1Q96GC9 ZNF785-202ENST00000470110 2867 ntAPPRIS ALT2 TSL 2 BASIC14.48□□□□□ -0.09
VMP1Q96GC9 CEACAM16-201ENST00000405314 1583 ntAPPRIS P1 TSL 5 BASIC14.47□□□□□ -0.09
VMP1Q96GC9 GCLM-204ENST00000615724 3008 ntTSL 1 (best) BASIC14.47□□□□□ -0.09
VMP1Q96GC9 MRC2-202ENST00000446119 3201 ntTSL 2 BASIC14.47□□□□□ -0.09
VMP1Q96GC9 TNFSF13-201ENST00000338784 1971 ntAPPRIS P3 TSL 1 (best) BASIC14.47□□□□□ -0.09
VMP1Q96GC9 RPS6KC1-201ENST00000366959 5454 ntAPPRIS ALT1 TSL 2 BASIC14.47□□□□□ -0.09
VMP1Q96GC9 RPS6KC1-202ENST00000366960 5490 ntAPPRIS P3 TSL 1 (best) BASIC14.47□□□□□ -0.09
VMP1Q96GC9 ABCB7-201ENST00000253577 2377 ntAPPRIS P3 TSL 1 (best) BASIC14.47□□□□□ -0.09
VMP1Q96GC9 C16orf58-201ENST00000327237 2793 ntAPPRIS P2 TSL 1 (best) BASIC14.47□□□□□ -0.09
VMP1Q96GC9 SLC25A35-201ENST00000380067 2785 ntTSL 2 BASIC14.47□□□□□ -0.09
VMP1Q96GC9 CD81-201ENST00000263645 1520 ntAPPRIS P1 TSL 1 (best) BASIC14.47□□□□□ -0.09
VMP1Q96GC9 RBPMS2-202ENST00000560606 1746 ntTSL 2 BASIC14.47□□□□□ -0.09
VMP1Q96GC9 EI24-214ENST00000620753 1718 ntAPPRIS P1 TSL 5 BASIC14.47□□□□□ -0.09
VMP1Q96GC9 AC010424.3-201ENST00000635510 1745 ntTSL 5 BASIC14.47□□□□□ -0.09
VMP1Q96GC9 AC140479.7-201ENST00000636301 2332 ntBASIC14.47□□□□□ -0.09
VMP1Q96GC9 BRF1-203ENST00000379937 3314 ntTSL 1 (best) BASIC14.47□□□□□ -0.09
VMP1Q96GC9 FBLN2-203ENST00000404922 4318 ntAPPRIS P4 TSL 5 BASIC14.47□□□□□ -0.09
VMP1Q96GC9 HERPUD1-201ENST00000300302 1862 ntAPPRIS ALT1 TSL 1 (best) BASIC14.47□□□□□ -0.09
VMP1Q96GC9 RAB38-201ENST00000243662 1465 ntAPPRIS P1 TSL 1 (best) BASIC14.47□□□□□ -0.09
VMP1Q96GC9 KRT9-202ENST00000588431 1493 ntTSL 1 (best) BASIC14.47□□□□□ -0.09
VMP1Q96GC9 MIOX-201ENST00000216075 1130 ntAPPRIS P1 TSL 1 (best) BASIC14.47□□□□□ -0.09
VMP1Q96GC9 RAB2A-201ENST00000262646 3848 ntAPPRIS P1 TSL 1 (best) BASIC14.47□□□□□ -0.09
VMP1Q96GC9 TMEM91-202ENST00000356385 944 ntTSL 1 (best) BASIC14.47□□□□□ -0.09
VMP1Q96GC9 TNFRSF14-202ENST00000409119 896 ntAPPRIS ALT2 TSL 3 BASIC14.47□□□□□ -0.09
VMP1Q96GC9 TEX26-AS1-201ENST00000411835 1203 ntTSL 1 (best) BASIC14.47□□□□□ -0.09
VMP1Q96GC9 AC073133.1-201ENST00000426187 432 ntTSL 3 BASIC14.47□□□□□ -0.09
VMP1Q96GC9 AL162726.2-201ENST00000438986 1017 ntBASIC14.47□□□□□ -0.09
VMP1Q96GC9 ZNF707-203ENST00000442058 562 ntTSL 4 BASIC14.47□□□□□ -0.09
VMP1Q96GC9 AC106886.2-201ENST00000483578 883 ntTSL 5 BASIC14.47□□□□□ -0.09
VMP1Q96GC9 AC021491.2-201ENST00000513017 607 ntTSL 3 BASIC14.47□□□□□ -0.09
VMP1Q96GC9 AC005342.2-201ENST00000544163 315 ntTSL 3 BASIC14.47□□□□□ -0.09
VMP1Q96GC9 GABARAPL1-217ENST00000545887 571 ntAPPRIS P1 TSL 3 BASIC14.47□□□□□ -0.09
VMP1Q96GC9 AL390726.5-201ENST00000562942 871 ntTSL 2 BASIC14.47□□□□□ -0.09
VMP1Q96GC9 AC129507.3-201ENST00000571512 913 ntTSL 2 BASIC14.47□□□□□ -0.09
VMP1Q96GC9 TMEM205-208ENST00000587948 688 ntAPPRIS P1 TSL 5 BASIC14.47□□□□□ -0.09
VMP1Q96GC9 TRAPPC6A-204ENST00000588062 695 ntTSL 2 BASIC14.47□□□□□ -0.09
VMP1Q96GC9 GPX4-206ENST00000588919 803 ntTSL 2 BASIC14.47□□□□□ -0.09
VMP1Q96GC9 TMEM205-211ENST00000589555 788 ntAPPRIS P1 TSL 2 BASIC14.47□□□□□ -0.09
VMP1Q96GC9 AC239800.4-201ENST00000603712 296 ntBASIC14.47□□□□□ -0.09
VMP1Q96GC9 GNRHR2-204ENST00000604273 1078 ntTSL 1 (best) BASIC14.47□□□□□ -0.09
VMP1Q96GC9 AC239798.4-201ENST00000609879 700 ntTSL 2 BASIC14.47□□□□□ -0.09
VMP1Q96GC9 KISS1-202ENST00000625357 435 ntAPPRIS ALT2 TSL 5 BASIC14.47□□□□□ -0.09
VMP1Q96GC9 SNPH-203ENST00000614659 5354 ntAPPRIS ALT2 TSL 1 (best) BASIC14.47□□□□□ -0.09
VMP1Q96GC9 B3GAT1-203ENST00000524765 5737 ntAPPRIS P1 TSL 2 BASIC14.47□□□□□ -0.09
VMP1Q96GC9 CGGBP1-201ENST00000309534 4495 ntAPPRIS P1 TSL 1 (best) BASIC14.47□□□□□ -0.09
VMP1Q96GC9 AC136759.1-202ENST00000530858 2194 ntBASIC14.47□□□□□ -0.09
VMP1Q96GC9 SPOCK3-202ENST00000357545 2936 ntAPPRIS P3 TSL 1 (best) BASIC14.47□□□□□ -0.09
VMP1Q96GC9 NDRG4-217ENST00000562999 2931 ntTSL 5 BASIC14.47□□□□□ -0.09
VMP1Q96GC9 NACC1-201ENST00000292431 4445 ntAPPRIS P1 TSL 1 (best) BASIC14.47□□□□□ -0.09
VMP1Q96GC9 FXYD6-207ENST00000527717 1799 ntAPPRIS P2 TSL 2 BASIC14.47□□□□□ -0.09
VMP1Q96GC9 MAPK7-203ENST00000395602 3059 ntAPPRIS P1 TSL 1 (best) BASIC14.47□□□□□ -0.09
VMP1Q96GC9 TRIM50-202ENST00000453152 1599 ntAPPRIS P1 TSL 2 BASIC14.47□□□□□ -0.09
VMP1Q96GC9 SHANK2-204ENST00000409530 2123 ntTSL 5 BASIC14.47□□□□□ -0.09
VMP1Q96GC9 CYTH3-201ENST00000350796 4505 ntAPPRIS P2 TSL 1 (best) BASIC14.47□□□□□ -0.09
VMP1Q96GC9 CYTH3-202ENST00000396741 4508 ntAPPRIS ALT1 TSL 5 BASIC14.47□□□□□ -0.09
VMP1Q96GC9 AC117489.1-201ENST00000625169 3217 ntBASIC14.47□□□□□ -0.09
VMP1Q96GC9 PLEKHD1-201ENST00000322564 4865 ntAPPRIS P1 TSL 1 (best) BASIC14.47□□□□□ -0.09
VMP1Q96GC9 ABCG2-201ENST00000237612 4479 ntAPPRIS P1 TSL 1 (best) BASIC14.47□□□□□ -0.09
VMP1Q96GC9 SLC24A3-201ENST00000328041 3929 ntAPPRIS P1 TSL 1 (best) BASIC14.47□□□□□ -0.09
VMP1Q96GC9 MAP3K12-205ENST00000547488 2807 ntAPPRIS ALT2 TSL 2 BASIC14.47□□□□□ -0.09
VMP1Q96GC9 SELENON-203ENST00000374315 4212 ntAPPRIS ALT2 TSL 5 BASIC14.46□□□□□ -0.09
VMP1Q96GC9 NADSYN1-216ENST00000530055 2416 ntTSL 2 BASIC14.46□□□□□ -0.09
VMP1Q96GC9 PRMT2-202ENST00000334494 1334 ntTSL 1 (best) BASIC14.46□□□□□ -0.09
VMP1Q96GC9 AMMECR1-203ENST00000372059 3052 ntTSL 1 (best) BASIC14.46□□□□□ -0.09
VMP1Q96GC9 NOP14-203ENST00000416614 3538 ntAPPRIS P3 TSL 1 (best) BASIC14.46□□□□□ -0.09
VMP1Q96GC9 NDUFB8-202ENST00000370320 684 ntTSL 3 BASIC14.46□□□□□ -0.09
VMP1Q96GC9 BLCAP-202ENST00000397131 633 ntAPPRIS P1 TSL 3 BASIC14.46□□□□□ -0.09
VMP1Q96GC9 BLCAP-203ENST00000397134 566 ntAPPRIS P1 TSL 4 BASIC14.46□□□□□ -0.09
VMP1Q96GC9 TPSD1-202ENST00000397534 896 ntAPPRIS ALT2 TSL 5 BASIC14.46□□□□□ -0.09
VMP1Q96GC9 SUN1-204ENST00000403868 978 ntTSL 2 BASIC14.46□□□□□ -0.09
VMP1Q96GC9 AL512384.1-201ENST00000406683 331 ntBASIC14.46□□□□□ -0.09
VMP1Q96GC9 DERL3-204ENST00000406855 1063 ntAPPRIS ALT2 TSL 1 (best) BASIC14.46□□□□□ -0.09
VMP1Q96GC9 SOCS2P1-201ENST00000417727 557 ntBASIC14.46□□□□□ -0.09
VMP1Q96GC9 INE1-201ENST00000456273 945 ntBASIC14.46□□□□□ -0.09
VMP1Q96GC9 LEPROTL1-204ENST00000518192 847 ntTSL 3 BASIC14.46□□□□□ -0.09
Retrieved 100 of 98,524 protein–RNA pairs in 36 ms