Protein–RNA interactions for Protein: Q92889

ERCC4, DNA repair endonuclease XPF, humanhuman

Predicted RBP Predictions only

Length 916 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
ERCC4Q92889 ITSN2-203ENST00000406921 4563 ntTSL 1 (best) BASIC17.09■□□□□ 0.33
ERCC4Q92889 RPS9-205ENST00000402367 1617 ntTSL 3 BASIC17.09■□□□□ 0.33
ERCC4Q92889 TPM3-205ENST00000328159 1771 ntTSL 2 BASIC17.09■□□□□ 0.33
ERCC4Q92889 VCAN-211ENST00000513984 1825 ntTSL 1 (best) BASIC17.09■□□□□ 0.33
ERCC4Q92889 INTS11-204ENST00000421495 1868 ntTSL 2 BASIC17.09■□□□□ 0.33
ERCC4Q92889 KAT5-216ENST00000534650 1875 ntTSL 1 (best) BASIC17.09■□□□□ 0.33
ERCC4Q92889 NCK1-201ENST00000288986 1937 ntAPPRIS P1 TSL 1 (best) BASIC17.09■□□□□ 0.33
ERCC4Q92889 HDAC2-206ENST00000519108 2000 ntTSL 2 BASIC17.09■□□□□ 0.33
ERCC4Q92889 API5-203ENST00000455725 2257 ntTSL 2 BASIC17.09■□□□□ 0.33
ERCC4Q92889 AFAP1L1-205ENST00000515000 2319 ntTSL 1 (best) BASIC17.09■□□□□ 0.33
ERCC4Q92889 MICB-201ENST00000252229 2446 ntAPPRIS P3 TSL 1 (best) BASIC17.09■□□□□ 0.33
ERCC4Q92889 AC007388.1-204ENST00000449569 2517 ntTSL 2 BASIC17.09■□□□□ 0.33
ERCC4Q92889 CORO7-201ENST00000251166 3540 ntAPPRIS P1 TSL 1 (best) BASIC17.09■□□□□ 0.33
ERCC4Q92889 TNFRSF1B-201ENST00000376259 3683 ntAPPRIS P1 TSL 1 (best) BASIC17.09■□□□□ 0.33
ERCC4Q92889 SLC4A7-212ENST00000446700 4000 ntTSL 1 (best) BASIC17.09■□□□□ 0.33
ERCC4Q92889 CYTH3-201ENST00000350796 4505 ntAPPRIS P2 TSL 1 (best) BASIC17.09■□□□□ 0.33
ERCC4Q92889 CYTH3-202ENST00000396741 4508 ntAPPRIS ALT1 TSL 5 BASIC17.09■□□□□ 0.33
ERCC4Q92889 SPIN3-204ENST00000638257 4835 ntAPPRIS P1 TSL 5 BASIC17.09■□□□□ 0.33
ERCC4Q92889 TRAF1-201ENST00000373887 6324 ntAPPRIS P1 TSL 1 (best) BASIC17.08■□□□□ 0.33
ERCC4Q92889 PELP1-212ENST00000574876 3465 ntAPPRIS ALT2 TSL 1 (best) BASIC17.08■□□□□ 0.33
ERCC4Q92889 IKBKB-217ENST00000520810 3086 ntAPPRIS P1 TSL 1 (best) BASIC17.08■□□□□ 0.33
ERCC4Q92889 PROM2-203ENST00000403131 2922 ntAPPRIS P1 TSL 1 (best) BASIC17.08■□□□□ 0.33
ERCC4Q92889 IL17RA-201ENST00000319363 8607 ntAPPRIS P3 TSL 1 (best) BASIC17.08■□□□□ 0.33
ERCC4Q92889 WNT9B-202ENST00000393461 2654 ntTSL 2 BASIC17.08■□□□□ 0.33
ERCC4Q92889 ERLIN2-205ENST00000518586 2623 ntTSL 2 BASIC17.08■□□□□ 0.33
ERCC4Q92889 WDR77-201ENST00000235090 2576 ntAPPRIS P1 TSL 1 (best) BASIC17.08■□□□□ 0.33
ERCC4Q92889 WDR27-201ENST00000423258 2465 ntAPPRIS ALT2 TSL 1 (best) BASIC17.08■□□□□ 0.33
ERCC4Q92889 ATP6V1H-201ENST00000355221 2365 ntTSL 1 (best) BASIC17.08■□□□□ 0.33
ERCC4Q92889 FAM107A-206ENST00000474531 2271 ntTSL 2 BASIC17.08■□□□□ 0.33
ERCC4Q92889 ACER2-201ENST00000340967 2238 ntAPPRIS P1 TSL 1 (best) BASIC17.08■□□□□ 0.33
ERCC4Q92889 HNRNPR-204ENST00000427764 1788 ntTSL 1 (best) BASIC17.08■□□□□ 0.33
ERCC4Q92889 GABPB1-202ENST00000359031 1633 ntTSL 5 BASIC17.08■□□□□ 0.32
ERCC4Q92889 ZC2HC1C-202ENST00000439583 1509 ntTSL 1 (best) BASIC17.08■□□□□ 0.32
ERCC4Q92889 RERG-209ENST00000546331 1383 ntTSL 2 BASIC17.08■□□□□ 0.32
ERCC4Q92889 LINC01301-205ENST00000531654 1347 ntTSL 5 BASIC17.08■□□□□ 0.32
ERCC4Q92889 CMTM6-201ENST00000205636 3863 ntAPPRIS P1 TSL 1 (best) BASIC17.08■□□□□ 0.32
ERCC4Q92889 RPS5-201ENST00000196551 740 ntAPPRIS P1 TSL 1 (best) BASIC17.08■□□□□ 0.32
ERCC4Q92889 USE1-201ENST00000263897 843 ntAPPRIS P2 TSL 1 (best) BASIC17.08■□□□□ 0.32
ERCC4Q92889 PSMB6-201ENST00000270586 852 ntAPPRIS P1 TSL 1 (best) BASIC17.08■□□□□ 0.32
ERCC4Q92889 ETNK1-202ENST00000335148 1083 ntTSL 1 (best) BASIC17.08■□□□□ 0.32
ERCC4Q92889 FCN1-201ENST00000371806 1286 ntAPPRIS P1 TSL 1 (best) BASIC17.08■□□□□ 0.32
ERCC4Q92889 MIR943-201ENST00000401286 94 ntBASIC17.08■□□□□ 0.32
ERCC4Q92889 AL161785.2-201ENST00000427080 966 ntTSL 3 BASIC17.08■□□□□ 0.32
ERCC4Q92889 AC009477.1-201ENST00000452936 217 ntBASIC17.08■□□□□ 0.32
ERCC4Q92889 ST7-OT4-203ENST00000466018 894 ntTSL 5 BASIC17.08■□□□□ 0.32
ERCC4Q92889 TIMM17BP1-201ENST00000545713 516 ntBASIC17.08■□□□□ 0.32
ERCC4Q92889 GABARAPL1-217ENST00000545887 571 ntAPPRIS P1 TSL 3 BASIC17.08■□□□□ 0.32
ERCC4Q92889 AC011603.1-201ENST00000553174 717 ntTSL 2 BASIC17.08■□□□□ 0.32
ERCC4Q92889 AC092337.1-201ENST00000568699 1129 ntBASIC17.08■□□□□ 0.32
ERCC4Q92889 PSMB6-205ENST00000614486 871 ntTSL 2 BASIC17.08■□□□□ 0.32
ERCC4Q92889 5S_rRNA.22-201ENST00000614916 106 ntBASIC17.08■□□□□ 0.32
ERCC4Q92889 LINC01002-214ENST00000632102 561 ntTSL 4 BASIC17.08■□□□□ 0.32
ERCC4Q92889 HIST1H3D-202ENST00000635200 948 ntAPPRIS P1 TSL 3 BASIC17.08■□□□□ 0.32
ERCC4Q92889 SLC19A2-201ENST00000236137 3671 ntAPPRIS P1 TSL 1 (best) BASIC17.08■□□□□ 0.32
ERCC4Q92889 TP53I11-201ENST00000308212 3683 ntAPPRIS P1 TSL 5 BASIC17.08■□□□□ 0.32
ERCC4Q92889 SFSWAP-201ENST00000261674 3246 ntAPPRIS P3 TSL 1 (best) BASIC17.08■□□□□ 0.32
ERCC4Q92889 SLC2A13-201ENST00000280871 7003 ntAPPRIS P1 TSL 1 (best) BASIC17.08■□□□□ 0.32
ERCC4Q92889 KCP-206ENST00000613019 4853 ntAPPRIS P5 TSL 5 BASIC17.08■□□□□ 0.32
ERCC4Q92889 ZNF596-201ENST00000308811 2783 ntAPPRIS P1 TSL 1 (best) BASIC17.08■□□□□ 0.32
ERCC4Q92889 TEAD3-202ENST00000402886 2729 ntTSL 1 (best) BASIC17.08■□□□□ 0.32
ERCC4Q92889 UHRF1-204ENST00000616255 2661 ntAPPRIS P1 TSL 1 (best) BASIC17.08■□□□□ 0.32
ERCC4Q92889 ZNF664-202ENST00000392404 4262 ntAPPRIS P1 TSL 1 (best) BASIC17.08■□□□□ 0.32
ERCC4Q92889 CCT4-201ENST00000394440 2520 ntAPPRIS P1 TSL 1 (best) BASIC17.08■□□□□ 0.32
ERCC4Q92889 GATB-201ENST00000263985 2385 ntAPPRIS P1 TSL 1 (best) BASIC17.08■□□□□ 0.32
ERCC4Q92889 LINC01285-201ENST00000412422 2289 ntTSL 2 BASIC17.08■□□□□ 0.32
ERCC4Q92889 MIRLET7BHG-203ENST00000435439 2264 ntTSL 2 BASIC17.08■□□□□ 0.32
ERCC4Q92889 CPSF7-201ENST00000340437 3695 ntTSL 1 (best) BASIC17.08■□□□□ 0.32
ERCC4Q92889 GSTCD-206ENST00000507281 2091 ntTSL 5 BASIC17.08■□□□□ 0.32
ERCC4Q92889 AGO3-201ENST00000246314 3211 ntTSL 1 (best) BASIC17.08■□□□□ 0.32
ERCC4Q92889 NARFL-202ENST00000540986 3212 ntTSL 2 BASIC17.08■□□□□ 0.32
ERCC4Q92889 TYK2-210ENST00000529370 3176 ntTSL 2 BASIC17.08■□□□□ 0.32
ERCC4Q92889 DUOXA1-216ENST00000613425 1867 ntTSL 5 BASIC17.07■□□□□ 0.32
ERCC4Q92889 KNDC1-201ENST00000304613 6793 ntAPPRIS P1 TSL 1 (best) BASIC17.07■□□□□ 0.32
ERCC4Q92889 DUSP18-204ENST00000403268 2920 ntTSL 1 (best) BASIC17.07■□□□□ 0.32
ERCC4Q92889 SCLT1-209ENST00000511426 1696 ntAPPRIS ALT2 TSL 1 (best) BASIC17.07■□□□□ 0.32
ERCC4Q92889 DTD2-201ENST00000310850 2717 ntAPPRIS P1 TSL 1 (best) BASIC17.07■□□□□ 0.32
ERCC4Q92889 MPDU1-201ENST00000250124 1601 ntAPPRIS P1 TSL 1 (best) BASIC17.07■□□□□ 0.32
ERCC4Q92889 CLN3-201ENST00000333496 1608 ntTSL 5 BASIC17.07■□□□□ 0.32
ERCC4Q92889 AL158070.2-201ENST00000623713 1621 ntBASIC17.07■□□□□ 0.32
ERCC4Q92889 ARAP1-203ENST00000393605 4778 ntAPPRIS ALT2 TSL 1 (best) BASIC17.07■□□□□ 0.32
ERCC4Q92889 RAB5B-202ENST00000448789 1530 ntTSL 2 BASIC17.07■□□□□ 0.32
ERCC4Q92889 KYAT1-205ENST00000436267 2487 ntTSL 2 BASIC17.07■□□□□ 0.32
ERCC4Q92889 ADAM12-201ENST00000368676 3313 ntAPPRIS ALT2 TSL 1 (best) BASIC17.07■□□□□ 0.32
ERCC4Q92889 ACOT7-210ENST00000608083 1403 ntAPPRIS ALT2 TSL 1 (best) BASIC17.07■□□□□ 0.32
ERCC4Q92889 POM121-202ENST00000395270 7011 ntAPPRIS ALT2 TSL 1 (best) BASIC17.07■□□□□ 0.32
ERCC4Q92889 DNAJA4-206ENST00000446172 1399 ntTSL 1 (best) BASIC17.07■□□□□ 0.32
ERCC4Q92889 ALDH1A3-202ENST00000346623 3104 ntTSL 1 (best) BASIC17.07■□□□□ 0.32
ERCC4Q92889 LINC02138-201ENST00000378340 1326 ntTSL 2 BASIC17.07■□□□□ 0.32
ERCC4Q92889 LHB-201ENST00000221421 514 ntAPPRIS P1 TSL 1 (best) BASIC17.07■□□□□ 0.32
ERCC4Q92889 H2AFZ-201ENST00000296417 979 ntAPPRIS P1 TSL 1 (best) BASIC17.07■□□□□ 0.32
ERCC4Q92889 H3F3C-201ENST00000340398 1057 ntAPPRIS P1 BASIC17.07■□□□□ 0.32
ERCC4Q92889 PKIG-203ENST00000372887 769 ntTSL 3 BASIC17.07■□□□□ 0.32
ERCC4Q92889 AL365255.1-202ENST00000413887 363 ntTSL 5 BASIC17.07■□□□□ 0.32
ERCC4Q92889 LINC01067-201ENST00000432575 664 ntTSL 3 BASIC17.07■□□□□ 0.32
ERCC4Q92889 CDYL-205ENST00000449732 2139 ntTSL 2 BASIC17.07■□□□□ 0.32
ERCC4Q92889 APBB2-208ENST00000504305 1274 ntTSL 5 BASIC17.07■□□□□ 0.32
ERCC4Q92889 PXN-AS1-204ENST00000542265 854 ntTSL 2 BASIC17.07■□□□□ 0.32
ERCC4Q92889 MBD4-204ENST00000503197 2099 ntTSL 1 (best) BASIC17.07■□□□□ 0.32
ERCC4Q92889 AC152010.1-201ENST00000415779 2006 ntBASIC17.07■□□□□ 0.32
ERCC4Q92889 AICDA-201ENST00000229335 2819 ntAPPRIS P2 TSL 1 (best) BASIC17.07■□□□□ 0.32
Retrieved 100 of 98,524 protein–RNA pairs in 43.1 ms