Protein–RNA interactions for Protein: Q8TF72

SHROOM3, Protein Shroom3, humanhuman

Predictions only

Length 1,996 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SHROOM3Q8TF72 GZMB-202ENST00000382540 816 ntTSL 5 BASIC15.24■□□□□ 0.03
SHROOM3Q8TF72 GEMIN4-202ENST00000437269 1182 ntTSL 2 BASIC15.24■□□□□ 0.03
SHROOM3Q8TF72 PFN1P12-201ENST00000455938 534 ntBASIC15.24■□□□□ 0.03
SHROOM3Q8TF72 AC022447.6-201ENST00000515522 438 ntBASIC15.24■□□□□ 0.03
SHROOM3Q8TF72 AC100858.3-202ENST00000533496 553 ntTSL 4 BASIC15.24■□□□□ 0.03
SHROOM3Q8TF72 AC000032.1-201ENST00000562538 491 ntTSL 2 BASIC15.24■□□□□ 0.03
SHROOM3Q8TF72 MIR22HG-212ENST00000577164 931 ntTSL 4 BASIC15.24■□□□□ 0.03
SHROOM3Q8TF72 MIR3615-201ENST00000581999 87 ntBASIC15.24■□□□□ 0.03
SHROOM3Q8TF72 THAP4-206ENST00000612200 969 ntTSL 1 (best) BASIC15.24■□□□□ 0.03
SHROOM3Q8TF72 ARHGEF16-203ENST00000378378 3061 ntAPPRIS P1 TSL 2 BASIC15.24■□□□□ 0.03
SHROOM3Q8TF72 KCTD10-208ENST00000540089 3096 ntTSL 2 BASIC15.24■□□□□ 0.03
SHROOM3Q8TF72 ADAM33-206ENST00000617732 1971 ntTSL 5 BASIC15.24■□□□□ 0.03
SHROOM3Q8TF72 CCDC22-201ENST00000376227 2319 ntAPPRIS P1 TSL 1 (best) BASIC15.24■□□□□ 0.03
SHROOM3Q8TF72 ATP2A3-202ENST00000352011 3274 ntTSL 5 BASIC15.24■□□□□ 0.03
SHROOM3Q8TF72 TFAP2A-213ENST00000482890 2071 ntAPPRIS P3 TSL 5 BASIC15.24■□□□□ 0.03
SHROOM3Q8TF72 RRM1-214ENST00000534285 2075 ntTSL 5 BASIC15.24■□□□□ 0.03
SHROOM3Q8TF72 MUC1-228ENST00000620103 1811 ntAPPRIS ALT2 TSL 5 BASIC15.24■□□□□ 0.03
SHROOM3Q8TF72 ALDOA-209ENST00000563060 1550 ntAPPRIS P2 TSL 1 (best) BASIC15.24■□□□□ 0.03
SHROOM3Q8TF72 FBXL19-202ENST00000380310 3796 ntAPPRIS P2 TSL 2 BASIC15.24■□□□□ 0.03
SHROOM3Q8TF72 TUBGCP2-203ENST00000368563 4218 ntAPPRIS P1 TSL 1 (best) BASIC15.24■□□□□ 0.03
SHROOM3Q8TF72 LDHAL6B-201ENST00000307144 1693 ntAPPRIS P1 BASIC15.24■□□□□ 0.03
SHROOM3Q8TF72 AAMP-202ENST00000420660 1761 ntTSL 2 BASIC15.24■□□□□ 0.03
SHROOM3Q8TF72 ATG10-203ENST00000458350 1795 ntAPPRIS P1 TSL 1 (best) BASIC15.24■□□□□ 0.03
SHROOM3Q8TF72 XRCC3-211ENST00000555055 2584 ntAPPRIS P1 TSL 1 (best) BASIC15.24■□□□□ 0.03
SHROOM3Q8TF72 AC004754.1-201ENST00000600536 2242 ntAPPRIS P1 TSL 5 BASIC15.24■□□□□ 0.03
SHROOM3Q8TF72 TARS2-203ENST00000369054 1998 ntTSL 2 BASIC15.24■□□□□ 0.03
SHROOM3Q8TF72 RPS23-201ENST00000296674 3437 ntAPPRIS P1 TSL 1 (best) BASIC15.24■□□□□ 0.03
SHROOM3Q8TF72 SPACA9-203ENST00000372136 2536 ntTSL 1 (best) BASIC15.24■□□□□ 0.03
SHROOM3Q8TF72 AC007603.1-201ENST00000563124 2085 ntTSL 2 BASIC15.24■□□□□ 0.03
SHROOM3Q8TF72 ZNF683-201ENST00000349618 1610 ntAPPRIS P3 TSL 1 (best) BASIC15.24■□□□□ 0.03
SHROOM3Q8TF72 BNC1-201ENST00000345382 4610 ntAPPRIS P3 TSL 1 (best) BASIC15.24■□□□□ 0.03
SHROOM3Q8TF72 GALNT16-202ENST00000448469 2270 ntAPPRIS P1 TSL 1 (best) BASIC15.24■□□□□ 0.03
SHROOM3Q8TF72 C9orf24-201ENST00000297623 1151 ntAPPRIS P1 TSL 1 (best) BASIC15.24■□□□□ 0.03
SHROOM3Q8TF72 SPAG11B-203ENST00000359758 612 ntTSL 1 (best) BASIC15.24■□□□□ 0.03
SHROOM3Q8TF72 PRTFDC1-203ENST00000376378 747 ntTSL 2 BASIC15.24■□□□□ 0.03
SHROOM3Q8TF72 C9orf24-205ENST00000379133 712 ntTSL 1 (best) BASIC15.24■□□□□ 0.03
SHROOM3Q8TF72 AC099336.1-201ENST00000417053 1171 ntBASIC15.24■□□□□ 0.03
SHROOM3Q8TF72 AL365277.1-206ENST00000417869 487 ntTSL 3 BASIC15.24■□□□□ 0.03
SHROOM3Q8TF72 RGS5-214ENST00000429865 754 ntTSL 3 BASIC15.24■□□□□ 0.03
SHROOM3Q8TF72 AL354761.2-202ENST00000430816 546 ntAPPRIS P1 TSL 5 BASIC15.24■□□□□ 0.03
SHROOM3Q8TF72 AL365277.1-204ENST00000450157 599 ntTSL 3 BASIC15.24■□□□□ 0.03
SHROOM3Q8TF72 FO681548.1-201ENST00000455617 1132 ntBASIC15.24■□□□□ 0.03
SHROOM3Q8TF72 AL365277.1-203ENST00000458207 693 ntTSL 3 BASIC15.24■□□□□ 0.03
SHROOM3Q8TF72 Z84485.1-202ENST00000499560 1230 ntTSL 1 (best) BASIC15.24■□□□□ 0.03
SHROOM3Q8TF72 IL32-218ENST00000530890 774 ntAPPRIS ALT2 TSL 2 BASIC15.24■□□□□ 0.03
SHROOM3Q8TF72 COG4-212ENST00000564653 590 ntTSL 5 BASIC15.24■□□□□ 0.03
SHROOM3Q8TF72 AC003070.2-201ENST00000589730 386 ntTSL 3 BASIC15.24■□□□□ 0.03
SHROOM3Q8TF72 MCHR2-201ENST00000281806 2368 ntAPPRIS P1 TSL 2 BASIC15.24■□□□□ 0.03
SHROOM3Q8TF72 AC090099.1-203ENST00000527059 2945 ntTSL 1 (best) BASIC15.24■□□□□ 0.03
SHROOM3Q8TF72 SIGLEC6-202ENST00000346477 1940 ntAPPRIS ALT2 TSL 2 BASIC15.23■□□□□ 0.03
SHROOM3Q8TF72 SLC38A5-212ENST00000619100 2100 ntTSL 2 BASIC15.23■□□□□ 0.03
SHROOM3Q8TF72 SLC38A5-214ENST00000622196 2100 ntTSL 5 BASIC15.23■□□□□ 0.03
SHROOM3Q8TF72 NUP153-202ENST00000537253 6030 ntAPPRIS ALT2 TSL 2 BASIC15.23■□□□□ 0.03
SHROOM3Q8TF72 ADORA1-201ENST00000309502 2896 ntAPPRIS P1 TSL 1 (best) BASIC15.23■□□□□ 0.03
SHROOM3Q8TF72 SLC1A7-206ENST00000620347 2873 ntAPPRIS ALT2 TSL 1 (best) BASIC15.23■□□□□ 0.03
SHROOM3Q8TF72 RASSF5-205ENST00000581503 5586 ntTSL 1 (best) BASIC15.23■□□□□ 0.03
SHROOM3Q8TF72 BIRC5-203ENST00000374948 2446 ntTSL 1 (best) BASIC15.23■□□□□ 0.03
SHROOM3Q8TF72 PAX6-203ENST00000379109 3182 ntAPPRIS ALT1 TSL 2 BASIC15.23■□□□□ 0.03
SHROOM3Q8TF72 ENO2-211ENST00000541477 2549 ntAPPRIS P1 TSL 2 BASIC15.23■□□□□ 0.03
SHROOM3Q8TF72 FXN-201ENST00000377270 2608 ntAPPRIS P1 TSL 1 (best) BASIC15.23■□□□□ 0.03
SHROOM3Q8TF72 JPH4-205ENST00000622501 3489 ntAPPRIS ALT1 TSL 5 BASIC15.23■□□□□ 0.03
SHROOM3Q8TF72 BARHL2-201ENST00000370445 1979 ntAPPRIS P1 TSL 1 (best) BASIC15.23■□□□□ 0.03
SHROOM3Q8TF72 SLC25A4-201ENST00000281456 4440 ntAPPRIS P1 TSL 1 (best) BASIC15.23■□□□□ 0.03
SHROOM3Q8TF72 LMNA-201ENST00000347559 3137 ntTSL 5 BASIC15.23■□□□□ 0.03
SHROOM3Q8TF72 SLC9A2-201ENST00000233969 5410 ntAPPRIS P1 TSL 1 (best) BASIC15.23■□□□□ 0.03
SHROOM3Q8TF72 AC068418.2-201ENST00000577309 3703 ntBASIC15.23■□□□□ 0.03
SHROOM3Q8TF72 MAPK7-203ENST00000395602 3059 ntAPPRIS P1 TSL 1 (best) BASIC15.23■□□□□ 0.03
SHROOM3Q8TF72 HTR3E-202ENST00000415389 2139 ntAPPRIS ALT2 TSL 1 (best) BASIC15.23■□□□□ 0.03
SHROOM3Q8TF72 MLF1-201ENST00000355893 2203 ntAPPRIS P1 TSL 1 (best) BASIC15.23■□□□□ 0.03
SHROOM3Q8TF72 TPO-206ENST00000382269 1155 ntTSL 5 BASIC15.23■□□□□ 0.03
SHROOM3Q8TF72 BUD31-202ENST00000403633 1139 ntAPPRIS P1 TSL 1 (best) BASIC15.23■□□□□ 0.03
SHROOM3Q8TF72 FXNP2-201ENST00000411625 547 ntBASIC15.23■□□□□ 0.03
SHROOM3Q8TF72 C17orf62-239ENST00000585080 741 ntAPPRIS P1 TSL 5 BASIC15.23■□□□□ 0.03
SHROOM3Q8TF72 AL160412.1-202ENST00000616819 663 ntTSL 4 BASIC15.23■□□□□ 0.03
SHROOM3Q8TF72 TMEM106C-201ENST00000256686 1394 ntTSL 1 (best) BASIC15.23■□□□□ 0.03
SHROOM3Q8TF72 TANGO2-205ENST00000401886 1559 ntTSL 5 BASIC15.23■□□□□ 0.03
SHROOM3Q8TF72 C12orf76-209ENST00000615315 1580 ntTSL 5 BASIC15.23■□□□□ 0.03
SHROOM3Q8TF72 YTHDF3-212ENST00000621413 2370 ntTSL 5 BASIC15.23■□□□□ 0.03
SHROOM3Q8TF72 ACE-201ENST00000290863 2479 ntTSL 1 (best) BASIC15.23■□□□□ 0.03
SHROOM3Q8TF72 CA10-203ENST00000451037 3189 ntAPPRIS P1 TSL 1 (best) BASIC15.23■□□□□ 0.03
SHROOM3Q8TF72 WHRN-202ENST00000362057 3566 ntAPPRIS P1 TSL 1 (best) BASIC15.23■□□□□ 0.03
SHROOM3Q8TF72 SNX18-202ENST00000343017 3140 ntBASIC15.23■□□□□ 0.03
SHROOM3Q8TF72 MAGEA2-204ENST00000611674 1728 ntAPPRIS P1 TSL 2 BASIC15.23■□□□□ 0.03
SHROOM3Q8TF72 SUMO1-203ENST00000392246 1536 ntAPPRIS P1 TSL 1 (best) BASIC15.23■□□□□ 0.03
SHROOM3Q8TF72 SFTA3-204ENST00000518529 1531 ntAPPRIS P1 TSL 1 (best) BASIC15.23■□□□□ 0.03
SHROOM3Q8TF72 PPP4R4-201ENST00000304338 3868 ntAPPRIS P1 TSL 1 (best) BASIC15.23■□□□□ 0.03
SHROOM3Q8TF72 PFKFB4-201ENST00000232375 3586 ntAPPRIS P1 TSL 1 (best) BASIC15.23■□□□□ 0.03
SHROOM3Q8TF72 UBA1-201ENST00000335972 3559 ntAPPRIS P1 TSL 1 (best) BASIC15.23■□□□□ 0.03
SHROOM3Q8TF72 TRIM7-203ENST00000393315 2851 ntTSL 1 (best) BASIC15.23■□□□□ 0.03
SHROOM3Q8TF72 CLK4-201ENST00000316308 2568 ntAPPRIS P1 TSL 1 (best) BASIC15.23■□□□□ 0.03
SHROOM3Q8TF72 TGM6-202ENST00000381423 2158 ntTSL 1 (best) BASIC15.22■□□□□ 0.03
SHROOM3Q8TF72 BCL2-202ENST00000398117 7461 ntAPPRIS P1 TSL 1 (best) BASIC15.22■□□□□ 0.03
SHROOM3Q8TF72 FAM160A2-203ENST00000524416 3327 ntTSL 2 BASIC15.22■□□□□ 0.03
SHROOM3Q8TF72 AC013472.1-203ENST00000380387 1966 ntTSL 4 BASIC15.22■□□□□ 0.03
SHROOM3Q8TF72 ATP6AP2-213ENST00000636251 1877 ntAPPRIS ALT2 TSL 5 BASIC15.22■□□□□ 0.03
SHROOM3Q8TF72 WASH2P-202ENST00000538033 2800 ntTSL 2 BASIC15.22■□□□□ 0.03
SHROOM3Q8TF72 PDE3B-202ENST00000455098 3665 ntAPPRIS ALT2 TSL 1 (best) BASIC15.22■□□□□ 0.03
SHROOM3Q8TF72 RUSC1-202ENST00000368347 2503 ntAPPRIS ALT2 TSL 1 (best) BASIC15.22■□□□□ 0.03
SHROOM3Q8TF72 NBPF15-202ENST00000488031 4535 ntAPPRIS P1 TSL 5 BASIC15.22■□□□□ 0.03
SHROOM3Q8TF72 MFRP-205ENST00000619721 3917 ntAPPRIS P1 TSL 1 (best) BASIC15.22■□□□□ 0.03
Retrieved 100 of 98,524 protein–RNA pairs in 34.6 ms