Protein–RNA interactions for Protein: Q8NF91

SYNE1, Nesprin-1, humanhuman

Known RBP Predictions only

Length 8,797 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SYNE1Q8NF91 MIR3615-201ENST00000581999 87 ntBASIC4.69□□□□□ -1.66
SYNE1Q8NF91 AC244517.4-201ENST00000624549 580 ntTSL 4 BASIC4.69□□□□□ -1.66
SYNE1Q8NF91 LILRA2-208ENST00000629481 661 ntTSL 2 BASIC4.69□□□□□ -1.66
SYNE1Q8NF91 KCNJ2-202ENST00000535240 1685 ntAPPRIS P1 TSL 1 (best) BASIC4.69□□□□□ -1.66
SYNE1Q8NF91 NOS2P2-202ENST00000639528 1659 ntTSL 1 (best) BASIC4.69□□□□□ -1.66
SYNE1Q8NF91 EDN3-205ENST00000395654 2318 ntAPPRIS ALT2 TSL 1 (best) BASIC4.69□□□□□ -1.66
SYNE1Q8NF91 SPATA33-210ENST00000611218 1546 ntAPPRIS ALT2 TSL 2 BASIC4.69□□□□□ -1.66
SYNE1Q8NF91 FADS2-201ENST00000257261 2964 ntTSL 1 (best) BASIC4.69□□□□□ -1.66
SYNE1Q8NF91 RAB18-208ENST00000611151 4931 ntTSL 5 BASIC4.69□□□□□ -1.66
SYNE1Q8NF91 KRT8P35-201ENST00000483942 1338 ntBASIC4.69□□□□□ -1.66
SYNE1Q8NF91 TMEM51-202ENST00000376014 1843 ntAPPRIS P1 TSL 2 BASIC4.69□□□□□ -1.66
SYNE1Q8NF91 MKL1-203ENST00000402042 4343 ntTSL 1 (best) BASIC4.69□□□□□ -1.66
SYNE1Q8NF91 PAX2-202ENST00000361791 3193 ntAPPRIS ALT1 TSL 2 BASIC4.69□□□□□ -1.66
SYNE1Q8NF91 AC011477.6-201ENST00000604980 1927 ntBASIC4.69□□□□□ -1.66
SYNE1Q8NF91 RGS6-218ENST00000556437 1689 ntAPPRIS ALT1 TSL 1 (best) BASIC4.69□□□□□ -1.66
SYNE1Q8NF91 AC092143.1-201ENST00000556922 2776 ntAPPRIS P1 TSL 2 BASIC4.69□□□□□ -1.66
SYNE1Q8NF91 CDPF1-204ENST00000404744 1541 ntTSL 3 BASIC4.69□□□□□ -1.66
SYNE1Q8NF91 TNFSF8-203ENST00000618336 1523 ntTSL 3 BASIC4.69□□□□□ -1.66
SYNE1Q8NF91 TMBIM1-201ENST00000258412 2371 ntAPPRIS P1 TSL 1 (best) BASIC4.69□□□□□ -1.66
SYNE1Q8NF91 FGR-202ENST00000374004 2350 ntAPPRIS P1 TSL 1 (best) BASIC4.69□□□□□ -1.66
SYNE1Q8NF91 AC006001.1-201ENST00000325130 474 ntBASIC4.69□□□□□ -1.66
SYNE1Q8NF91 IFNL2-201ENST00000331982 737 ntAPPRIS P1 TSL 1 (best) BASIC4.69□□□□□ -1.66
SYNE1Q8NF91 CLIC1-206ENST00000375779 1127 ntAPPRIS P1 TSL 5 BASIC4.69□□□□□ -1.66
SYNE1Q8NF91 PPP1R14B-202ENST00000392210 600 ntTSL 3 BASIC4.69□□□□□ -1.66
SYNE1Q8NF91 PSORS1C3-201ENST00000412143 593 ntTSL 1 (best) BASIC4.69□□□□□ -1.66
SYNE1Q8NF91 OLR1-203ENST00000432556 950 ntTSL 2 BASIC4.69□□□□□ -1.66
SYNE1Q8NF91 LINC01762-204ENST00000434879 436 ntTSL 2 BASIC4.69□□□□□ -1.66
SYNE1Q8NF91 LIMS3-201ENST00000437679 1220 ntTSL 1 (best) BASIC4.69□□□□□ -1.66
SYNE1Q8NF91 CHL1-AS2-203ENST00000452919 726 ntTSL 2 BASIC4.69□□□□□ -1.66
SYNE1Q8NF91 TMEM44-AS1-203ENST00000453671 1119 ntTSL 2 BASIC4.69□□□□□ -1.66
SYNE1Q8NF91 RPS2P36-201ENST00000456516 831 ntBASIC4.69□□□□□ -1.66
SYNE1Q8NF91 GLYCTK-203ENST00000461183 889 ntTSL 3 BASIC4.69□□□□□ -1.66
SYNE1Q8NF91 KRT18P43-201ENST00000469825 1281 ntBASIC4.69□□□□□ -1.66
SYNE1Q8NF91 AP001258.2-201ENST00000529891 490 ntBASIC4.69□□□□□ -1.66
SYNE1Q8NF91 LINC00928-204ENST00000561201 1123 ntTSL 1 (best) BASIC4.69□□□□□ -1.66
SYNE1Q8NF91 AP001063.1-201ENST00000568332 529 ntBASIC4.69□□□□□ -1.66
SYNE1Q8NF91 ABBA01031663.1-201ENST00000635630 790 ntBASIC4.69□□□□□ -1.66
SYNE1Q8NF91 STAT3-201ENST00000264657 5047 ntAPPRIS P4 TSL 1 (best) BASIC4.69□□□□□ -1.66
SYNE1Q8NF91 LETM2-202ENST00000379957 1873 ntAPPRIS ALT2 TSL 5 BASIC4.69□□□□□ -1.66
SYNE1Q8NF91 PSMD9-201ENST00000261817 2307 ntAPPRIS ALT1 TSL 2 BASIC4.69□□□□□ -1.66
SYNE1Q8NF91 SLC39A1-201ENST00000310483 2427 ntAPPRIS P1 TSL 1 (best) BASIC4.69□□□□□ -1.66
SYNE1Q8NF91 MYLIP-201ENST00000349606 2796 ntTSL 1 (best) BASIC4.69□□□□□ -1.66
SYNE1Q8NF91 PDE3B-201ENST00000282096 6076 ntAPPRIS P2 TSL 1 (best) BASIC4.69□□□□□ -1.66
SYNE1Q8NF91 BSG-204ENST00000545507 1795 ntTSL 1 (best) BASIC4.69□□□□□ -1.66
SYNE1Q8NF91 APLF-201ENST00000303795 3847 ntAPPRIS P1 TSL 1 (best) BASIC4.69□□□□□ -1.66
SYNE1Q8NF91 PROM2-201ENST00000317620 4728 ntAPPRIS P1 TSL 1 (best) BASIC4.69□□□□□ -1.66
SYNE1Q8NF91 ITSN1-208ENST00000399349 5191 ntTSL 1 (best) BASIC4.69□□□□□ -1.66
SYNE1Q8NF91 PPP1R26P2-201ENST00000611403 3595 ntBASIC4.69□□□□□ -1.66
SYNE1Q8NF91 TBC1D14-208ENST00000451522 4149 ntAPPRIS ALT1 TSL 5 BASIC4.69□□□□□ -1.66
SYNE1Q8NF91 PAPSS2-202ENST00000456849 3856 ntTSL 1 (best) BASIC4.69□□□□□ -1.66
SYNE1Q8NF91 G3BP2-202ENST00000359707 4883 ntAPPRIS P4 TSL 1 (best) BASIC4.69□□□□□ -1.66
SYNE1Q8NF91 CISH-202ENST00000443053 2167 ntTSL 1 (best) BASIC4.69□□□□□ -1.66
SYNE1Q8NF91 SF3B5-201ENST00000367569 693 ntAPPRIS P1 BASIC4.69□□□□□ -1.66
SYNE1Q8NF91 HAUS4P1-201ENST00000406739 1145 ntBASIC4.69□□□□□ -1.66
SYNE1Q8NF91 RN7SL769P-201ENST00000469386 295 ntBASIC4.69□□□□□ -1.66
SYNE1Q8NF91 CCDC153-204ENST00000503566 1295 ntAPPRIS P1 TSL 5 BASIC4.69□□□□□ -1.66
SYNE1Q8NF91 TRAPPC2L-206ENST00000564365 1060 ntTSL 1 (best) BASIC4.69□□□□□ -1.66
SYNE1Q8NF91 STPG3-204ENST00000611378 1015 ntTSL 1 (best) BASIC4.69□□□□□ -1.66
SYNE1Q8NF91 AC145423.3-201ENST00000615987 467 ntBASIC4.69□□□□□ -1.66
SYNE1Q8NF91 PRKD2-216ENST00000601806 2906 ntAPPRIS ALT2 TSL 5 BASIC4.69□□□□□ -1.66
SYNE1Q8NF91 SLC22A1-202ENST00000366963 1948 ntAPPRIS P1 TSL 1 (best) BASIC4.69□□□□□ -1.66
SYNE1Q8NF91 SLC1A7-204ENST00000611397 2499 ntTSL 1 (best) BASIC4.69□□□□□ -1.66
SYNE1Q8NF91 TPO-201ENST00000329066 3138 ntAPPRIS P1 TSL 1 (best) BASIC4.69□□□□□ -1.66
SYNE1Q8NF91 UBE3A-209ENST00000625778 3217 ntTSL 5 BASIC4.69□□□□□ -1.66
SYNE1Q8NF91 CYP2AB1P-202ENST00000454440 1456 ntBASIC4.69□□□□□ -1.66
SYNE1Q8NF91 RUNX2-201ENST00000359524 5390 ntTSL 1 (best) BASIC4.69□□□□□ -1.66
SYNE1Q8NF91 AC026904.1-201ENST00000430626 3549 ntTSL 2 BASIC4.69□□□□□ -1.66
SYNE1Q8NF91 MAU2-201ENST00000262815 4994 ntAPPRIS P1 TSL 1 (best) BASIC4.69□□□□□ -1.66
SYNE1Q8NF91 TKT-202ENST00000423516 2075 ntTSL 2 BASIC4.69□□□□□ -1.66
SYNE1Q8NF91 MATN1-AS1-201ENST00000414532 3925 ntTSL 2 BASIC4.69□□□□□ -1.66
SYNE1Q8NF91 HTR1B-201ENST00000369947 2021 ntAPPRIS P1 BASIC4.69□□□□□ -1.66
SYNE1Q8NF91 LETM2-205ENST00000519476 2240 ntTSL 1 (best) BASIC4.69□□□□□ -1.66
SYNE1Q8NF91 PAX2-201ENST00000355243 4057 ntAPPRIS P2 TSL 1 (best) BASIC4.69□□□□□ -1.66
SYNE1Q8NF91 NTNG1-208ENST00000370074 3048 ntTSL 1 (best) BASIC4.69□□□□□ -1.66
SYNE1Q8NF91 GUK1-206ENST00000366723 845 ntTSL 5 BASIC4.69□□□□□ -1.66
SYNE1Q8NF91 AP000350.4-201ENST00000433835 788 ntAPPRIS P1 TSL 5 BASIC4.69□□□□□ -1.66
SYNE1Q8NF91 PTPA-217ENST00000434095 870 ntTSL 2 BASIC4.69□□□□□ -1.66
SYNE1Q8NF91 AC106786.2-201ENST00000506859 561 ntTSL 4 BASIC4.69□□□□□ -1.66
SYNE1Q8NF91 SELENOW-201ENST00000509570 881 ntTSL 5 BASIC4.69□□□□□ -1.66
SYNE1Q8NF91 MTX3-202ENST00000512528 1280 ntAPPRIS P1 TSL 1 (best) BASIC4.69□□□□□ -1.66
SYNE1Q8NF91 MIR3907-201ENST00000579424 151 ntBASIC4.69□□□□□ -1.66
SYNE1Q8NF91 LTBR-201ENST00000228918 2260 ntAPPRIS P3 TSL 1 (best) BASIC4.69□□□□□ -1.66
SYNE1Q8NF91 ARHGEF33-202ENST00000409978 4484 ntAPPRIS P1 TSL 5 BASIC4.69□□□□□ -1.66
SYNE1Q8NF91 PAM-206ENST00000438793 5432 ntAPPRIS ALT1 TSL 1 (best) BASIC4.69□□□□□ -1.66
SYNE1Q8NF91 TSC22D1-211ENST00000501704 4026 ntTSL 2 BASIC4.69□□□□□ -1.66
SYNE1Q8NF91 AP000253.1-201ENST00000449339 2233 ntTSL 3 BASIC4.69□□□□□ -1.66
SYNE1Q8NF91 AC092978.1-201ENST00000474979 1309 ntTSL 5 BASIC4.69□□□□□ -1.66
SYNE1Q8NF91 AC092978.1-202ENST00000637590 1327 ntBASIC4.69□□□□□ -1.66
SYNE1Q8NF91 DCAF6-201ENST00000312263 3186 ntAPPRIS ALT2 TSL 1 (best) BASIC4.69□□□□□ -1.66
SYNE1Q8NF91 ALDH3A2-201ENST00000176643 3928 ntAPPRIS P3 TSL 1 (best) BASIC4.69□□□□□ -1.66
SYNE1Q8NF91 MST1L-201ENST00000442552 2185 ntBASIC4.69□□□□□ -1.66
SYNE1Q8NF91 TRPM2-AS-202ENST00000456880 2056 ntTSL 2 BASIC4.69□□□□□ -1.66
SYNE1Q8NF91 PLA1A-201ENST00000273371 1786 ntAPPRIS P1 TSL 1 (best) BASIC4.69□□□□□ -1.66
SYNE1Q8NF91 POMT1-201ENST00000341012 2912 ntTSL 2 BASIC4.69□□□□□ -1.66
SYNE1Q8NF91 UBTF-204ENST00000436088 2738 ntAPPRIS P1 TSL 2 BASIC4.69□□□□□ -1.66
SYNE1Q8NF91 RAC2-201ENST00000249071 1482 ntAPPRIS P2 TSL 1 (best) BASIC4.69□□□□□ -1.66
SYNE1Q8NF91 CELP-203ENST00000624767 2414 ntTSL 5 BASIC4.69□□□□□ -1.66
SYNE1Q8NF91 EPHA1-201ENST00000275815 3363 ntAPPRIS P1 TSL 1 (best) BASIC4.69□□□□□ -1.66
SYNE1Q8NF91 HYAL1-202ENST00000320295 2324 ntAPPRIS P1 TSL 2 BASIC4.69□□□□□ -1.66
SYNE1Q8NF91 M6PR-202ENST00000536844 2305 ntTSL 3 BASIC4.69□□□□□ -1.66
Retrieved 100 of 98,524 protein–RNA pairs in 46.8 ms