Protein–RNA interactions for Protein: Q8IX90

SKA3, Spindle and kinetochore-associated protein 3, humanhuman

Predictions only

Length 412 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SKA3Q8IX90 SPATA7-203ENST00000393545 2123 ntAPPRIS P3 TSL 1 (best) BASIC13.36□□□□□ -0.27
SKA3Q8IX90 ZNF331-217ENST00000512387 2130 ntAPPRIS P1 TSL 1 (best) BASIC13.36□□□□□ -0.27
SKA3Q8IX90 FKBP9-201ENST00000242209 3462 ntAPPRIS P1 TSL 1 (best) BASIC13.36□□□□□ -0.27
SKA3Q8IX90 USH1C-207ENST00000527720 2278 ntTSL 1 (best) BASIC13.36□□□□□ -0.27
SKA3Q8IX90 RPTOR-203ENST00000570891 2286 ntTSL 1 (best) BASIC13.36□□□□□ -0.27
SKA3Q8IX90 DMRT2-202ENST00000302441 1495 ntTSL 5 BASIC13.36□□□□□ -0.27
SKA3Q8IX90 EID3-201ENST00000527879 1467 ntAPPRIS P1 BASIC13.36□□□□□ -0.27
SKA3Q8IX90 CCDC110-209ENST00000510617 2592 ntAPPRIS ALT2 TSL 5 BASIC13.35□□□□□ -0.27
SKA3Q8IX90 C14orf180-203ENST00000557649 2551 ntAPPRIS P3 TSL 1 (best) BASIC13.35□□□□□ -0.27
SKA3Q8IX90 IGDCC3-201ENST00000327987 4479 ntAPPRIS P2 TSL 1 (best) BASIC13.35□□□□□ -0.27
SKA3Q8IX90 RSPH3-201ENST00000252655 2175 ntAPPRIS P2 TSL 1 (best) BASIC13.35□□□□□ -0.27
SKA3Q8IX90 MBD1-209ENST00000398495 2178 ntTSL 5 BASIC13.35□□□□□ -0.27
SKA3Q8IX90 CPSF7-202ENST00000394888 3650 ntAPPRIS P4 TSL 2 BASIC13.35□□□□□ -0.27
SKA3Q8IX90 C4orf19-201ENST00000284437 1949 ntAPPRIS P1 TSL 1 (best) BASIC13.35□□□□□ -0.27
SKA3Q8IX90 RCSD1-206ENST00000537350 3044 ntAPPRIS ALT2 TSL 1 (best) BASIC13.35□□□□□ -0.27
SKA3Q8IX90 LONP1-202ENST00000540670 3002 ntTSL 2 BASIC13.35□□□□□ -0.27
SKA3Q8IX90 SLC25A21-AS1-201ENST00000556667 1924 ntBASIC13.35□□□□□ -0.27
SKA3Q8IX90 ASNA1-204ENST00000591090 1368 ntAPPRIS P1 TSL 5 BASIC13.35□□□□□ -0.27
SKA3Q8IX90 DHCR7-202ENST00000407721 2601 ntAPPRIS P1 TSL 1 (best) BASIC13.35□□□□□ -0.27
SKA3Q8IX90 MBD4-204ENST00000503197 2099 ntTSL 1 (best) BASIC13.35□□□□□ -0.27
SKA3Q8IX90 IL12A-201ENST00000305579 1522 ntAPPRIS P1 TSL 1 (best) BASIC13.35□□□□□ -0.27
SKA3Q8IX90 RALGPS2-204ENST00000367635 5834 ntAPPRIS P1 TSL 1 (best) BASIC13.35□□□□□ -0.27
SKA3Q8IX90 ZBTB7C-204ENST00000586438 4899 ntAPPRIS P1 TSL 1 (best) BASIC13.35□□□□□ -0.27
SKA3Q8IX90 KIAA1468-201ENST00000256858 5579 ntAPPRIS P1 TSL 5 BASIC13.35□□□□□ -0.27
SKA3Q8IX90 CKM-201ENST00000221476 1657 ntAPPRIS P1 TSL 1 (best) BASIC13.35□□□□□ -0.27
SKA3Q8IX90 LINC00094-204ENST00000599836 1689 ntAPPRIS P5 BASIC13.35□□□□□ -0.27
SKA3Q8IX90 UBE2D3-207ENST00000394801 2368 ntAPPRIS ALT1 TSL 1 (best) BASIC13.35□□□□□ -0.27
SKA3Q8IX90 SLC52A3-201ENST00000217254 2654 ntAPPRIS P1 TSL 5 BASIC13.35□□□□□ -0.27
SKA3Q8IX90 ZFHX2-205ENST00000615307 1972 ntTSL 2 BASIC13.35□□□□□ -0.27
SKA3Q8IX90 CCNDBP1-201ENST00000300213 3660 ntAPPRIS P1 TSL 1 (best) BASIC13.35□□□□□ -0.27
SKA3Q8IX90 C10orf62-201ENST00000370640 1208 ntAPPRIS P1 BASIC13.35□□□□□ -0.27
SKA3Q8IX90 ADIRF-201ENST00000372013 917 ntAPPRIS P1 TSL 1 (best) BASIC13.35□□□□□ -0.27
SKA3Q8IX90 BRF1-202ENST00000379932 884 ntTSL 5 BASIC13.35□□□□□ -0.27
SKA3Q8IX90 ADAMTSL1-208ENST00000380570 931 ntTSL 1 (best) BASIC13.35□□□□□ -0.27
SKA3Q8IX90 IFNL3-201ENST00000413851 656 ntAPPRIS P2 TSL 1 (best) BASIC13.35□□□□□ -0.27
SKA3Q8IX90 KLF2P2-201ENST00000416807 1039 ntBASIC13.35□□□□□ -0.27
SKA3Q8IX90 AC021188.1-201ENST00000421534 740 ntTSL 3 BASIC13.35□□□□□ -0.27
SKA3Q8IX90 ARL6IP4-207ENST00000426960 910 ntAPPRIS ALT2 TSL 3 BASIC13.35□□□□□ -0.27
SKA3Q8IX90 ACTG1P3-201ENST00000431775 1114 ntBASIC13.35□□□□□ -0.27
SKA3Q8IX90 AL929472.3-201ENST00000433474 700 ntTSL 5 BASIC13.35□□□□□ -0.27
SKA3Q8IX90 AL731661.1-201ENST00000438217 758 ntTSL 5 BASIC13.35□□□□□ -0.27
SKA3Q8IX90 INE1-201ENST00000456273 945 ntBASIC13.35□□□□□ -0.27
SKA3Q8IX90 RN7SL837P-201ENST00000463010 287 ntBASIC13.35□□□□□ -0.27
SKA3Q8IX90 FAM104B-207ENST00000489298 712 ntAPPRIS ALT2 TSL 2 BASIC13.35□□□□□ -0.27
SKA3Q8IX90 NME2-207ENST00000514264 850 ntAPPRIS P1 TSL 2 BASIC13.35□□□□□ -0.27
SKA3Q8IX90 AC090735.1-201ENST00000523881 488 ntTSL 4 BASIC13.35□□□□□ -0.27
SKA3Q8IX90 NEU3-203ENST00000529024 581 ntTSL 3 BASIC13.35□□□□□ -0.27
SKA3Q8IX90 LINC02109-201ENST00000565798 869 ntTSL 5 BASIC13.35□□□□□ -0.27
SKA3Q8IX90 AC009486.1-201ENST00000569860 813 ntBASIC13.35□□□□□ -0.27
SKA3Q8IX90 RPSAP52-203ENST00000622976 1023 ntBASIC13.35□□□□□ -0.27
SKA3Q8IX90 AC105233.6-201ENST00000642093 218 ntBASIC13.35□□□□□ -0.27
SKA3Q8IX90 ZFPM2-206ENST00000520492 3960 ntTSL 2 BASIC13.35□□□□□ -0.27
SKA3Q8IX90 ZNF586-201ENST00000391702 2265 ntTSL 2 BASIC13.35□□□□□ -0.27
SKA3Q8IX90 PGPEP1-201ENST00000252813 1409 ntTSL 2 BASIC13.35□□□□□ -0.27
SKA3Q8IX90 FKBP6-204ENST00000431982 1446 ntAPPRIS ALT2 TSL 2 BASIC13.35□□□□□ -0.27
SKA3Q8IX90 MN1-201ENST00000302326 7556 ntAPPRIS P1 TSL 1 (best) BASIC13.35□□□□□ -0.27
SKA3Q8IX90 SIMC1-205ENST00000443967 3572 ntAPPRIS ALT2 TSL 1 (best) BASIC13.35□□□□□ -0.27
SKA3Q8IX90 AC041040.2-201ENST00000622926 2899 ntBASIC13.35□□□□□ -0.27
SKA3Q8IX90 CRACR2A-201ENST00000252322 2186 ntTSL 1 (best) BASIC13.35□□□□□ -0.27
SKA3Q8IX90 REC8-209ENST00000611366 2331 ntAPPRIS P1 TSL 1 (best) BASIC13.35□□□□□ -0.27
SKA3Q8IX90 MCL1-202ENST00000369026 3932 ntAPPRIS P1 TSL 1 (best) BASIC13.35□□□□□ -0.27
SKA3Q8IX90 AJ011931.1-201ENST00000618749 2492 ntBASIC13.35□□□□□ -0.27
SKA3Q8IX90 NKIRAS2-201ENST00000307641 2948 ntAPPRIS P1 TSL 1 (best) BASIC13.35□□□□□ -0.27
SKA3Q8IX90 SLC2A11-203ENST00000345044 3219 ntAPPRIS P1 TSL 1 (best) BASIC13.35□□□□□ -0.27
SKA3Q8IX90 GPR84-201ENST00000267015 1497 ntAPPRIS P1 TSL 1 (best) BASIC13.35□□□□□ -0.27
SKA3Q8IX90 CYP26A1-202ENST00000371531 2245 ntTSL 2 BASIC13.35□□□□□ -0.27
SKA3Q8IX90 COPS7B-224ENST00000620578 2500 ntTSL 2 BASIC13.35□□□□□ -0.27
SKA3Q8IX90 PHF14-215ENST00000634607 3407 ntAPPRIS P1 TSL 5 BASIC13.35□□□□□ -0.27
SKA3Q8IX90 SEC63-201ENST00000369002 6411 ntAPPRIS P1 TSL 1 (best) BASIC13.35□□□□□ -0.27
SKA3Q8IX90 KATNBL1-201ENST00000256544 2723 ntAPPRIS P1 TSL 1 (best) BASIC13.34□□□□□ -0.27
SKA3Q8IX90 HDHD3-201ENST00000238379 1834 ntAPPRIS P1 TSL 1 (best) BASIC13.34□□□□□ -0.27
SKA3Q8IX90 NACC1-201ENST00000292431 4445 ntAPPRIS P1 TSL 1 (best) BASIC13.34□□□□□ -0.27
SKA3Q8IX90 LRRK1-201ENST00000388948 7671 ntAPPRIS P1 TSL 5 BASIC13.34□□□□□ -0.27
SKA3Q8IX90 OPCML-IT1-201ENST00000533859 2936 ntTSL 2 BASIC13.34□□□□□ -0.27
SKA3Q8IX90 AC126335.2-201ENST00000623362 4637 ntBASIC13.34□□□□□ -0.27
SKA3Q8IX90 ZNF655-212ENST00000424881 4666 ntAPPRIS ALT2 TSL 2 BASIC13.34□□□□□ -0.27
SKA3Q8IX90 AL137783.1-201ENST00000623494 1896 ntBASIC13.34□□□□□ -0.27
SKA3Q8IX90 AC026688.2-201ENST00000518984 1734 ntTSL 3 BASIC13.34□□□□□ -0.27
SKA3Q8IX90 EI24-214ENST00000620753 1718 ntAPPRIS P1 TSL 5 BASIC13.34□□□□□ -0.27
SKA3Q8IX90 TMCO3-207ENST00000474393 2843 ntTSL 2 BASIC13.34□□□□□ -0.27
SKA3Q8IX90 TDRKH-204ENST00000368825 2651 ntTSL 2 BASIC13.34□□□□□ -0.27
SKA3Q8IX90 BLMH-201ENST00000261714 2365 ntAPPRIS P1 TSL 1 (best) BASIC13.34□□□□□ -0.27
SKA3Q8IX90 KRT77-201ENST00000341809 3305 ntAPPRIS P1 TSL 1 (best) BASIC13.34□□□□□ -0.27
SKA3Q8IX90 PIGT-202ENST00000279036 2245 ntAPPRIS P1 TSL 1 (best) BASIC13.34□□□□□ -0.27
SKA3Q8IX90 CAMLG-201ENST00000297156 2221 ntAPPRIS P1 TSL 1 (best) BASIC13.34□□□□□ -0.27
SKA3Q8IX90 TTC29-208ENST00000513335 2226 ntAPPRIS ALT2 TSL 2 BASIC13.34□□□□□ -0.27
SKA3Q8IX90 RER1-203ENST00000378513 3000 ntTSL 3 BASIC13.34□□□□□ -0.27
SKA3Q8IX90 RPS15-201ENST00000233609 534 ntTSL 2 BASIC13.34□□□□□ -0.27
SKA3Q8IX90 TOMM5-201ENST00000321301 751 ntAPPRIS P1 TSL 1 (best) BASIC13.34□□□□□ -0.27
SKA3Q8IX90 WDR38-201ENST00000373574 1252 ntAPPRIS P3 TSL 1 (best) BASIC13.34□□□□□ -0.27
SKA3Q8IX90 WDR45-208ENST00000396681 1146 ntTSL 5 BASIC13.34□□□□□ -0.27
SKA3Q8IX90 AC243836.1-201ENST00000416696 438 ntTSL 3 BASIC13.34□□□□□ -0.27
SKA3Q8IX90 UFL1-AS1-201ENST00000430796 548 ntTSL 3 BASIC13.34□□□□□ -0.27
SKA3Q8IX90 SPATA3-204ENST00000433428 856 ntAPPRIS P2 TSL 1 (best) BASIC13.34□□□□□ -0.27
SKA3Q8IX90 LINC00473-201ENST00000444465 798 ntTSL 3 BASIC13.34□□□□□ -0.27
SKA3Q8IX90 HYAL1-208ENST00000457214 1084 ntTSL 1 (best) BASIC13.34□□□□□ -0.27
SKA3Q8IX90 AL513217.1-202ENST00000458139 600 ntTSL 3 BASIC13.34□□□□□ -0.27
SKA3Q8IX90 AC012640.1-201ENST00000509915 688 ntTSL 3 BASIC13.34□□□□□ -0.27
SKA3Q8IX90 SPDYE16-201ENST00000515340 858 ntAPPRIS ALT2 TSL 5 BASIC13.34□□□□□ -0.27
SKA3Q8IX90 LACTB2-203ENST00000522447 1034 ntAPPRIS P1 TSL 2 BASIC13.34□□□□□ -0.27
Retrieved 100 of 98,524 protein–RNA pairs in 34.1 ms