Protein–RNA interactions for Protein: Q7Z494

NPHP3, Nephrocystin-3, humanhuman

Predictions only

Length 1,330 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
NPHP3Q7Z494 FBXO41-205ENST00000521871 7336 ntAPPRIS P1 TSL 5 BASIC19.93■□□□□ 0.78
NPHP3Q7Z494 PCBP2-215ENST00000549863 1619 ntTSL 5 BASIC19.93■□□□□ 0.78
NPHP3Q7Z494 STOX1-201ENST00000298596 3377 ntAPPRIS P1 TSL 1 (best) BASIC19.93■□□□□ 0.78
NPHP3Q7Z494 FP565260.6-203ENST00000620015 1435 ntTSL 3 BASIC19.93■□□□□ 0.78
NPHP3Q7Z494 LINC00472-203ENST00000426635 2958 ntTSL 2 BASIC19.93■□□□□ 0.78
NPHP3Q7Z494 PPM1H-201ENST00000228705 6353 ntAPPRIS P1 TSL 1 (best) BASIC19.93■□□□□ 0.78
NPHP3Q7Z494 BTBD1-201ENST00000261721 3297 ntAPPRIS P1 TSL 1 (best) BASIC19.93■□□□□ 0.78
NPHP3Q7Z494 STIP1-201ENST00000305218 2196 ntAPPRIS P1 TSL 1 (best) BASIC19.93■□□□□ 0.78
NPHP3Q7Z494 DUSP8-202ENST00000397374 4480 ntAPPRIS P1 TSL 1 (best) BASIC19.93■□□□□ 0.78
NPHP3Q7Z494 ZNF786-202ENST00000491431 2874 ntAPPRIS P1 TSL 1 (best) BASIC19.93■□□□□ 0.78
NPHP3Q7Z494 FAM227A-201ENST00000355830 2417 ntAPPRIS P5 TSL 5 BASIC19.93■□□□□ 0.78
NPHP3Q7Z494 C15orf38-AP3S2-201ENST00000398333 2439 ntAPPRIS P1 TSL 2 BASIC19.93■□□□□ 0.78
NPHP3Q7Z494 LIMS1-201ENST00000332345 1235 ntAPPRIS P3 TSL 1 (best) BASIC19.93■□□□□ 0.78
NPHP3Q7Z494 CTHRC1-202ENST00000415886 571 ntTSL 2 BASIC19.93■□□□□ 0.78
NPHP3Q7Z494 HVCN1-203ENST00000439744 1215 ntTSL 2 BASIC19.93■□□□□ 0.78
NPHP3Q7Z494 AC018638.5-201ENST00000450885 754 ntBASIC19.93■□□□□ 0.78
NPHP3Q7Z494 AC244197.1-201ENST00000456494 951 ntBASIC19.93■□□□□ 0.78
NPHP3Q7Z494 RN7SL277P-201ENST00000481521 288 ntBASIC19.93■□□□□ 0.78
NPHP3Q7Z494 AC034231.1-201ENST00000507251 537 ntTSL 4 BASIC19.93■□□□□ 0.78
NPHP3Q7Z494 ATP6V0A2-207ENST00000544833 1013 ntTSL 2 BASIC19.93■□□□□ 0.78
NPHP3Q7Z494 ATP6V1D-206ENST00000554236 888 ntTSL 5 BASIC19.93■□□□□ 0.78
NPHP3Q7Z494 SHBG-210ENST00000572262 984 ntTSL 1 (best) BASIC19.93■□□□□ 0.78
NPHP3Q7Z494 MIA-206ENST00000597784 455 ntAPPRIS P1 TSL 3 BASIC19.93■□□□□ 0.78
NPHP3Q7Z494 AC005759.1-202ENST00000599416 415 ntTSL 3 BASIC19.93■□□□□ 0.78
NPHP3Q7Z494 PCIF1-201ENST00000372409 2747 ntAPPRIS P1 TSL 1 (best) BASIC19.93■□□□□ 0.78
NPHP3Q7Z494 CCL18-201ENST00000616054 1324 ntAPPRIS P1 TSL 1 (best) BASIC19.93■□□□□ 0.78
NPHP3Q7Z494 TSSK2-201ENST00000399635 1816 ntAPPRIS P1 BASIC19.93■□□□□ 0.78
NPHP3Q7Z494 ZNF786-201ENST00000316286 3144 ntTSL 1 (best) BASIC19.92■□□□□ 0.78
NPHP3Q7Z494 SHISA2-201ENST00000319420 2860 ntAPPRIS P1 TSL 1 (best) BASIC19.92■□□□□ 0.78
NPHP3Q7Z494 AL513315.1-201ENST00000640756 1370 ntTSL 5 BASIC19.92■□□□□ 0.78
NPHP3Q7Z494 CYB5R3-205ENST00000407623 2153 ntTSL 3 BASIC19.92■□□□□ 0.78
NPHP3Q7Z494 AP000552.1-203ENST00000416615 1930 ntTSL 5 BASIC19.92■□□□□ 0.78
NPHP3Q7Z494 LINC00668-206ENST00000581725 1902 ntTSL 2 BASIC19.92■□□□□ 0.78
NPHP3Q7Z494 LIMS2-209ENST00000410038 1695 ntTSL 2 BASIC19.92■□□□□ 0.78
NPHP3Q7Z494 CANT1-211ENST00000591773 1669 ntAPPRIS P1 TSL 1 (best) BASIC19.92■□□□□ 0.78
NPHP3Q7Z494 OSBPL6-203ENST00000357080 2217 ntTSL 1 (best) BASIC19.92■□□□□ 0.78
NPHP3Q7Z494 SPIN3-224ENST00000639583 2245 ntTSL 5 BASIC19.92■□□□□ 0.78
NPHP3Q7Z494 PCDHA7-202ENST00000525929 5221 ntAPPRIS P2 TSL 1 (best) BASIC19.92■□□□□ 0.78
NPHP3Q7Z494 GPSM3-209ENST00000487761 1460 ntTSL 5 BASIC19.92■□□□□ 0.78
NPHP3Q7Z494 SPATC1-202ENST00000447830 1795 ntAPPRIS ALT2 TSL 1 (best) BASIC19.92■□□□□ 0.78
NPHP3Q7Z494 CNTNAP3B-201ENST00000276974 3240 ntTSL 5 BASIC19.92■□□□□ 0.78
NPHP3Q7Z494 LRRN4-201ENST00000378858 2692 ntAPPRIS P1 TSL 1 (best) BASIC19.92■□□□□ 0.78
NPHP3Q7Z494 PPIA-201ENST00000355968 818 ntTSL 1 (best) BASIC19.92■□□□□ 0.78
NPHP3Q7Z494 IGF2-201ENST00000381389 1023 ntAPPRIS P2 TSL 1 (best) BASIC19.92■□□□□ 0.78
NPHP3Q7Z494 KLK11-203ENST00000391804 930 ntAPPRIS ALT2 TSL 5 BASIC19.92■□□□□ 0.78
NPHP3Q7Z494 AL121845.1-201ENST00000447343 464 ntTSL 2 BASIC19.92■□□□□ 0.78
NPHP3Q7Z494 ZSCAN2-208ENST00000485222 910 ntTSL 1 (best) BASIC19.92■□□□□ 0.78
NPHP3Q7Z494 PPIA-208ENST00000489459 907 ntTSL 2 BASIC19.92■□□□□ 0.78
NPHP3Q7Z494 ZSCAN2-210ENST00000538076 1109 ntTSL 1 (best) BASIC19.92■□□□□ 0.78
NPHP3Q7Z494 AC124068.2-202ENST00000562356 612 ntTSL 3 BASIC19.92■□□□□ 0.78
NPHP3Q7Z494 AC124068.2-201ENST00000569473 1109 ntBASIC19.92■□□□□ 0.78
NPHP3Q7Z494 SIGLEC22P-201ENST00000599104 714 ntBASIC19.92■□□□□ 0.78
NPHP3Q7Z494 FXYD3-204ENST00000603181 758 ntAPPRIS P1 TSL 3 BASIC19.92■□□□□ 0.78
NPHP3Q7Z494 PPIA-210ENST00000620047 827 ntTSL 5 BASIC19.92■□□□□ 0.78
NPHP3Q7Z494 SNRPA1-216ENST00000626000 539 ntTSL 5 BASIC19.92■□□□□ 0.78
NPHP3Q7Z494 OR4C6-202ENST00000641251 1058 ntAPPRIS P1 BASIC19.92■□□□□ 0.78
NPHP3Q7Z494 LINC01168-201ENST00000461291 5254 ntTSL 2 BASIC19.92■□□□□ 0.78
NPHP3Q7Z494 C1QTNF2-201ENST00000393975 2414 ntAPPRIS P1 TSL 1 (best) BASIC19.92■□□□□ 0.78
NPHP3Q7Z494 AL672207.1-201ENST00000328462 1570 ntBASIC19.92■□□□□ 0.78
NPHP3Q7Z494 PCED1B-201ENST00000432328 1862 ntAPPRIS P1 TSL 3 BASIC19.92■□□□□ 0.78
NPHP3Q7Z494 APTX-211ENST00000463596 1345 ntAPPRIS ALT2 TSL 1 (best) BASIC19.92■□□□□ 0.78
NPHP3Q7Z494 LAIR1-209ENST00000434277 1645 ntAPPRIS ALT2 TSL 2 BASIC19.92■□□□□ 0.78
NPHP3Q7Z494 SLC9A5-201ENST00000299798 3736 ntAPPRIS P1 TSL 1 (best) BASIC19.92■□□□□ 0.78
NPHP3Q7Z494 SMARCA4-215ENST00000590574 5282 ntAPPRIS ALT1 TSL 5 BASIC19.92■□□□□ 0.78
NPHP3Q7Z494 LITAF-209ENST00000571688 2632 ntAPPRIS P1 TSL 1 (best) BASIC19.92■□□□□ 0.78
NPHP3Q7Z494 RPS6KA3-201ENST00000379565 7918 ntAPPRIS P1 TSL 1 (best) BASIC19.91■□□□□ 0.78
NPHP3Q7Z494 SLC2A9-201ENST00000264784 1850 ntAPPRIS P4 TSL 1 (best) BASIC19.91■□□□□ 0.78
NPHP3Q7Z494 KIFC2-201ENST00000301332 3646 ntAPPRIS P1 TSL 1 (best) BASIC19.91■□□□□ 0.78
NPHP3Q7Z494 MIB2-217ENST00000504599 3311 ntAPPRIS ALT2 TSL 2 BASIC19.91■□□□□ 0.78
NPHP3Q7Z494 AL121758.1-201ENST00000488788 2714 ntAPPRIS P1 TSL 2 BASIC19.91■□□□□ 0.78
NPHP3Q7Z494 OR4S1-201ENST00000319988 930 ntAPPRIS P1 BASIC19.91■□□□□ 0.78
NPHP3Q7Z494 Metazoa_SRP.9-201ENST00000415635 283 ntBASIC19.91■□□□□ 0.78
NPHP3Q7Z494 ACTBP7-201ENST00000418351 1124 ntBASIC19.91■□□□□ 0.78
NPHP3Q7Z494 RN7SL23P-201ENST00000484055 275 ntBASIC19.91■□□□□ 0.78
NPHP3Q7Z494 RN7SL665P-201ENST00000578793 300 ntBASIC19.91■□□□□ 0.78
NPHP3Q7Z494 THY1-209ENST00000580275 578 ntTSL 3 BASIC19.91■□□□□ 0.78
NPHP3Q7Z494 RPL18A-204ENST00000599898 491 ntTSL 2 BASIC19.91■□□□□ 0.78
NPHP3Q7Z494 AC027559.1-203ENST00000635726 517 ntTSL 5 BASIC19.91■□□□□ 0.78
NPHP3Q7Z494 TTC23L-209ENST00000638320 1185 ntAPPRIS ALT2 TSL 5 BASIC19.91■□□□□ 0.78
NPHP3Q7Z494 FAM86B1-216ENST00000533852 2043 ntAPPRIS ALT2 TSL 5 BASIC19.91■□□□□ 0.78
NPHP3Q7Z494 AC012485.3-201ENST00000637634 2424 ntTSL 5 BASIC19.91■□□□□ 0.78
NPHP3Q7Z494 CTBP2P8-201ENST00000422584 1330 ntBASIC19.91■□□□□ 0.78
NPHP3Q7Z494 MMADHC-203ENST00000428879 1726 ntAPPRIS P1 TSL 2 BASIC19.91■□□□□ 0.78
NPHP3Q7Z494 MAP7-209ENST00000618822 4497 ntAPPRIS ALT2 TSL 5 BASIC19.91■□□□□ 0.78
NPHP3Q7Z494 DENND6B-201ENST00000413817 4939 ntAPPRIS P1 TSL 1 (best) BASIC19.91■□□□□ 0.78
NPHP3Q7Z494 DEPDC7-201ENST00000241051 1755 ntAPPRIS P1 TSL 1 (best) BASIC19.91■□□□□ 0.78
NPHP3Q7Z494 TMEM198B-203ENST00000482378 2230 ntTSL 1 (best) BASIC19.91■□□□□ 0.78
NPHP3Q7Z494 TOB1-202ENST00000499247 2229 ntAPPRIS P1 TSL 1 (best) BASIC19.91■□□□□ 0.78
NPHP3Q7Z494 RFK-201ENST00000376736 2684 ntAPPRIS P1 TSL 1 (best) BASIC19.91■□□□□ 0.78
NPHP3Q7Z494 TRMT44-201ENST00000389737 2799 ntAPPRIS P2 TSL 5 BASIC19.9■□□□□ 0.78
NPHP3Q7Z494 ENDOU-203ENST00000545824 1513 ntTSL 2 BASIC19.9■□□□□ 0.78
NPHP3Q7Z494 NRXN1-209ENST00000405581 5078 ntTSL 1 (best) BASIC19.9■□□□□ 0.78
NPHP3Q7Z494 LCE2C-201ENST00000368783 614 ntAPPRIS P1 TSL 1 (best) BASIC19.9■□□□□ 0.78
NPHP3Q7Z494 CELP-201ENST00000411440 1249 ntTSL 5 BASIC19.9■□□□□ 0.78
NPHP3Q7Z494 RASA3-IT1-201ENST00000454005 380 ntTSL 3 BASIC19.9■□□□□ 0.78
NPHP3Q7Z494 RN7SL494P-201ENST00000461517 304 ntBASIC19.9■□□□□ 0.78
NPHP3Q7Z494 AC226150.1-201ENST00000544259 466 ntBASIC19.9■□□□□ 0.78
NPHP3Q7Z494 TUBB3-208ENST00000555576 572 ntTSL 4 BASIC19.9■□□□□ 0.78
NPHP3Q7Z494 AC007376.2-201ENST00000556271 540 ntTSL 3 BASIC19.9■□□□□ 0.78
NPHP3Q7Z494 AL356417.2-202ENST00000608986 532 ntTSL 3 BASIC19.9■□□□□ 0.78
Retrieved 100 of 98,524 protein–RNA pairs in 89.6 ms