Protein–RNA interactions for Protein: Q7Z3B4

NUP54, Nucleoporin p54, humanhuman

Predictions only

Length 507 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
NUP54Q7Z3B4 KIAA1217-203ENST00000376452 6052 ntAPPRIS ALT2 TSL 1 (best) BASIC13.93□□□□□ -0.18
NUP54Q7Z3B4 EHD4-201ENST00000220325 6416 ntAPPRIS P1 TSL 1 (best) BASIC13.92□□□□□ -0.18
NUP54Q7Z3B4 CENPO-202ENST00000380834 4386 ntAPPRIS P1 TSL 5 BASIC13.92□□□□□ -0.18
NUP54Q7Z3B4 EPB41L3-201ENST00000341928 4706 ntAPPRIS P3 TSL 1 (best) BASIC13.92□□□□□ -0.18
NUP54Q7Z3B4 TM4SF19-AS1-203ENST00000452051 1829 ntTSL 2 BASIC13.92□□□□□ -0.18
NUP54Q7Z3B4 AC007292.2-201ENST00000593524 1812 ntBASIC13.92□□□□□ -0.18
NUP54Q7Z3B4 MAGEA8-205ENST00000542674 2084 ntAPPRIS P1 TSL 3 BASIC13.92□□□□□ -0.18
NUP54Q7Z3B4 ANKS6-202ENST00000375019 2586 ntTSL 5 BASIC13.92□□□□□ -0.18
NUP54Q7Z3B4 ACAN-202ENST00000439576 8840 ntAPPRIS P2 TSL 5 BASIC13.92□□□□□ -0.18
NUP54Q7Z3B4 CCDC88A-201ENST00000263630 9667 ntAPPRIS P3 TSL 1 (best) BASIC13.92□□□□□ -0.18
NUP54Q7Z3B4 DDX55-201ENST00000238146 2654 ntAPPRIS P1 TSL 1 (best) BASIC13.92□□□□□ -0.18
NUP54Q7Z3B4 AC004922.1-201ENST00000638617 2430 ntAPPRIS P1 TSL 5 BASIC13.92□□□□□ -0.18
NUP54Q7Z3B4 SCGN-202ENST00000377961 1447 ntAPPRIS P1 TSL 1 (best) BASIC13.92□□□□□ -0.18
NUP54Q7Z3B4 AL390755.1-201ENST00000623716 2027 ntBASIC13.92□□□□□ -0.18
NUP54Q7Z3B4 DNAJC7-202ENST00000426588 1774 ntTSL 2 BASIC13.92□□□□□ -0.18
NUP54Q7Z3B4 AC055811.4-201ENST00000624039 1754 ntBASIC13.92□□□□□ -0.18
NUP54Q7Z3B4 TRAPPC8-210ENST00000582513 3205 ntTSL 1 (best) BASIC13.92□□□□□ -0.18
NUP54Q7Z3B4 OSMR-201ENST00000274276 5539 ntAPPRIS P1 TSL 1 (best) BASIC13.92□□□□□ -0.18
NUP54Q7Z3B4 DYNLRB2-201ENST00000305904 497 ntAPPRIS P1 TSL 1 (best) BASIC13.92□□□□□ -0.18
NUP54Q7Z3B4 TPM3P8-201ENST00000330554 643 ntBASIC13.92□□□□□ -0.18
NUP54Q7Z3B4 CYB5R3-203ENST00000402438 1050 ntTSL 5 BASIC13.92□□□□□ -0.18
NUP54Q7Z3B4 AL583835.2-202ENST00000421363 1104 ntTSL 1 (best) BASIC13.92□□□□□ -0.18
NUP54Q7Z3B4 KIF9-205ENST00000432493 633 ntTSL 1 (best) BASIC13.92□□□□□ -0.18
NUP54Q7Z3B4 WBP2-203ENST00000433525 928 ntTSL 2 BASIC13.92□□□□□ -0.18
NUP54Q7Z3B4 LIMS3-203ENST00000480744 1197 ntAPPRIS P1 TSL 5 BASIC13.92□□□□□ -0.18
NUP54Q7Z3B4 TMEM161B-AS1-212ENST00000513011 833 ntTSL 3 BASIC13.92□□□□□ -0.18
NUP54Q7Z3B4 ZFPL1-207ENST00000526791 384 ntTSL 3 BASIC13.92□□□□□ -0.18
NUP54Q7Z3B4 AC125603.2-201ENST00000546835 876 ntTSL 3 BASIC13.92□□□□□ -0.18
NUP54Q7Z3B4 RPS15-202ENST00000585665 467 ntTSL 3 BASIC13.92□□□□□ -0.18
NUP54Q7Z3B4 SMIM24-203ENST00000587847 820 ntAPPRIS ALT2 TSL 1 (best) BASIC13.92□□□□□ -0.18
NUP54Q7Z3B4 LCN8-205ENST00000612714 638 ntAPPRIS ALT2 TSL 1 (best) BASIC13.92□□□□□ -0.18
NUP54Q7Z3B4 LARP4-220ENST00000615080 856 ntTSL 5 BASIC13.92□□□□□ -0.18
NUP54Q7Z3B4 ROCK1-201ENST00000399799 9484 ntAPPRIS P1 TSL 1 (best) BASIC13.92□□□□□ -0.18
NUP54Q7Z3B4 ADGRB2-205ENST00000398547 4857 ntAPPRIS ALT2 TSL 5 BASIC13.92□□□□□ -0.18
NUP54Q7Z3B4 MIER1-209ENST00000401042 1648 ntTSL 1 (best) BASIC13.92□□□□□ -0.18
NUP54Q7Z3B4 AMT-204ENST00000427987 1646 ntTSL 5 BASIC13.92□□□□□ -0.18
NUP54Q7Z3B4 RAI2-204ENST00000451717 2224 ntAPPRIS P1 TSL 1 (best) BASIC13.92□□□□□ -0.18
NUP54Q7Z3B4 RTEL1-203ENST00000360203 4623 ntAPPRIS P1 TSL 5 BASIC13.92□□□□□ -0.18
NUP54Q7Z3B4 OPA1-205ENST00000361908 6439 ntAPPRIS P3 TSL 1 (best) BASIC13.92□□□□□ -0.18
NUP54Q7Z3B4 TMEM132E-203ENST00000631683 4379 ntAPPRIS P2 TSL 5 BASIC13.92□□□□□ -0.18
NUP54Q7Z3B4 CROT-201ENST00000331536 3175 ntAPPRIS P1 TSL 1 (best) BASIC13.92□□□□□ -0.18
NUP54Q7Z3B4 PITPNB-202ENST00000335272 2926 ntAPPRIS P3 TSL 1 (best) BASIC13.92□□□□□ -0.18
NUP54Q7Z3B4 NAXD-202ENST00000424185 2311 ntTSL 2 BASIC13.92□□□□□ -0.18
NUP54Q7Z3B4 RSPH6A-202ENST00000597055 2306 ntAPPRIS ALT2 TSL 1 (best) BASIC13.92□□□□□ -0.18
NUP54Q7Z3B4 SLC12A9-201ENST00000354161 3273 ntAPPRIS P1 TSL 1 (best) BASIC13.92□□□□□ -0.18
NUP54Q7Z3B4 PAWR-201ENST00000328827 9129 ntAPPRIS P1 TSL 1 (best) BASIC13.92□□□□□ -0.18
NUP54Q7Z3B4 ZFAND4-203ENST00000374366 3821 ntTSL 1 (best) BASIC13.92□□□□□ -0.18
NUP54Q7Z3B4 ZNF384-202ENST00000355772 2514 ntTSL 1 (best) BASIC13.92□□□□□ -0.18
NUP54Q7Z3B4 COX10-201ENST00000261643 2873 ntAPPRIS P1 TSL 1 (best) BASIC13.92□□□□□ -0.18
NUP54Q7Z3B4 SPIN3-207ENST00000638386 4461 ntAPPRIS P1 TSL 2 BASIC13.92□□□□□ -0.18
NUP54Q7Z3B4 FBXL19-202ENST00000380310 3796 ntAPPRIS P2 TSL 2 BASIC13.92□□□□□ -0.18
NUP54Q7Z3B4 LINGO1-201ENST00000355300 3055 ntAPPRIS P1 TSL 1 (best) BASIC13.92□□□□□ -0.18
NUP54Q7Z3B4 OSBP2-209ENST00000438716 2747 ntAPPRIS ALT2 TSL 2 BASIC13.92□□□□□ -0.18
NUP54Q7Z3B4 KDELC2-201ENST00000323468 4312 ntAPPRIS P1 TSL 1 (best) BASIC13.91□□□□□ -0.18
NUP54Q7Z3B4 FLNA-207ENST00000422373 8486 ntAPPRIS P3 TSL 5 BASIC13.91□□□□□ -0.18
NUP54Q7Z3B4 SLC26A11-203ENST00000546047 2807 ntAPPRIS P1 TSL 1 (best) BASIC13.91□□□□□ -0.18
NUP54Q7Z3B4 CCDC180-210ENST00000529487 5242 ntAPPRIS P1 TSL 1 (best) BASIC13.91□□□□□ -0.18
NUP54Q7Z3B4 MBD1-222ENST00000590208 2913 ntAPPRIS ALT2 TSL 1 (best) BASIC13.91□□□□□ -0.18
NUP54Q7Z3B4 CLDN22-201ENST00000323319 2581 ntAPPRIS P1 BASIC13.91□□□□□ -0.18
NUP54Q7Z3B4 SGCZ-201ENST00000382080 2234 ntAPPRIS P1 TSL 5 BASIC13.91□□□□□ -0.18
NUP54Q7Z3B4 ACOT7-210ENST00000608083 1403 ntAPPRIS ALT2 TSL 1 (best) BASIC13.91□□□□□ -0.18
NUP54Q7Z3B4 EDN3-201ENST00000311585 2655 ntAPPRIS ALT2 TSL 1 (best) BASIC13.91□□□□□ -0.18
NUP54Q7Z3B4 ANK1-205ENST00000347528 8237 ntAPPRIS P4 TSL 1 (best) BASIC13.91□□□□□ -0.18
NUP54Q7Z3B4 AL359258.3-201ENST00000622910 2331 ntBASIC13.91□□□□□ -0.18
NUP54Q7Z3B4 RET-201ENST00000340058 4149 ntAPPRIS ALT2 TSL 1 (best) BASIC13.91□□□□□ -0.18
NUP54Q7Z3B4 PALD1-201ENST00000263563 4555 ntAPPRIS P1 TSL 1 (best) BASIC13.91□□□□□ -0.18
NUP54Q7Z3B4 FAM110C-201ENST00000327669 3760 ntAPPRIS P1 TSL 1 (best) BASIC13.91□□□□□ -0.18
NUP54Q7Z3B4 CFAP46-202ENST00000368586 8278 ntAPPRIS P2 TSL 5 BASIC13.91□□□□□ -0.18
NUP54Q7Z3B4 UBAC2-202ENST00000376440 2525 ntTSL 2 BASIC13.91□□□□□ -0.18
NUP54Q7Z3B4 ZEB1-AS1-208ENST00000607166 2503 ntBASIC13.91□□□□□ -0.18
NUP54Q7Z3B4 MPPE1-201ENST00000309976 1636 ntTSL 1 (best) BASIC13.91□□□□□ -0.18
NUP54Q7Z3B4 GDAP1L1-201ENST00000342560 2265 ntAPPRIS P1 TSL 1 (best) BASIC13.91□□□□□ -0.18
NUP54Q7Z3B4 SOD1-201ENST00000270142 966 ntAPPRIS P1 TSL 1 (best) BASIC13.91□□□□□ -0.18
NUP54Q7Z3B4 PDE6D-201ENST00000287600 1175 ntAPPRIS P1 TSL 1 (best) BASIC13.91□□□□□ -0.18
NUP54Q7Z3B4 UBE2G2-201ENST00000330942 721 ntTSL 3 BASIC13.91□□□□□ -0.18
NUP54Q7Z3B4 PNRC1-203ENST00000369472 816 ntTSL 2 BASIC13.91□□□□□ -0.18
NUP54Q7Z3B4 TSPAN32-204ENST00000381121 999 ntAPPRIS ALT2 TSL 5 BASIC13.91□□□□□ -0.18
NUP54Q7Z3B4 GZMB-202ENST00000382540 816 ntTSL 5 BASIC13.91□□□□□ -0.18
NUP54Q7Z3B4 AC079776.1-201ENST00000401540 1152 ntBASIC13.91□□□□□ -0.18
NUP54Q7Z3B4 C17orf51-202ENST00000412778 877 ntAPPRIS ALT2 TSL 3 BASIC13.91□□□□□ -0.18
NUP54Q7Z3B4 ACA64.2-201ENST00000459014 129 ntBASIC13.91□□□□□ -0.18
NUP54Q7Z3B4 AL354710.2-201ENST00000468244 550 ntTSL 4 BASIC13.91□□□□□ -0.18
NUP54Q7Z3B4 RNA5SP486-201ENST00000515961 83 ntBASIC13.91□□□□□ -0.18
NUP54Q7Z3B4 CHCHD7-211ENST00000521831 573 ntTSL 2 BASIC13.91□□□□□ -0.18
NUP54Q7Z3B4 AC018653.3-202ENST00000538062 735 ntTSL 3 BASIC13.91□□□□□ -0.18
NUP54Q7Z3B4 SPATA21-206ENST00000612240 603 ntTSL 5 BASIC13.91□□□□□ -0.18
NUP54Q7Z3B4 ETV2-208ENST00000621247 941 ntTSL 5 BASIC13.91□□□□□ -0.18
NUP54Q7Z3B4 ENPP7P14-201ENST00000621765 1040 ntBASIC13.91□□□□□ -0.18
NUP54Q7Z3B4 RIC8A-217ENST00000626818 159 ntTSL 5 BASIC13.91□□□□□ -0.18
NUP54Q7Z3B4 PLIN4-202ENST00000633942 6484 ntAPPRIS ALT2 TSL 5 BASIC13.91□□□□□ -0.18
NUP54Q7Z3B4 FXYD6-201ENST00000260282 1929 ntAPPRIS P2 TSL 1 (best) BASIC13.91□□□□□ -0.18
NUP54Q7Z3B4 ZNF32-AS3-201ENST00000458063 1932 ntTSL 1 (best) BASIC13.91□□□□□ -0.18
NUP54Q7Z3B4 PLAGL1-206ENST00000416623 3237 ntAPPRIS P1 TSL 1 (best) BASIC13.91□□□□□ -0.18
NUP54Q7Z3B4 FAM32A-201ENST00000263384 1455 ntAPPRIS P1 TSL 1 (best) BASIC13.91□□□□□ -0.18
NUP54Q7Z3B4 CES4A-203ENST00000535696 1472 ntTSL 2 BASIC13.91□□□□□ -0.18
NUP54Q7Z3B4 NRP2-201ENST00000272849 5909 ntTSL 1 (best) BASIC13.91□□□□□ -0.18
NUP54Q7Z3B4 PGBD5-202ENST00000525115 1569 ntTSL 2 BASIC13.91□□□□□ -0.18
NUP54Q7Z3B4 LINC00691-201ENST00000432505 2232 ntTSL 1 (best) BASIC13.91□□□□□ -0.18
NUP54Q7Z3B4 AGRN-210ENST00000620552 7394 ntTSL 5 BASIC13.91□□□□□ -0.18
NUP54Q7Z3B4 GLUL-203ENST00000339526 3942 ntAPPRIS P1 TSL 1 (best) BASIC13.91□□□□□ -0.18
Retrieved 100 of 98,524 protein–RNA pairs in 66.3 ms