Protein–RNA interactions for Protein: P35548

MSX2, Homeobox protein MSX-2, humanhuman

Predicted RBP Predictions only

Length 267 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
MSX2P35548 PRAP1-202ENST00000463201 587 ntAPPRIS ALT2 TSL 1 (best) BASIC14.39□□□□□ -0.11
MSX2P35548 AC008406.2-201ENST00000507058 532 ntTSL 3 BASIC14.39□□□□□ -0.11
MSX2P35548 MRFAP1-203ENST00000507420 563 ntAPPRIS P1 TSL 4 BASIC14.39□□□□□ -0.11
MSX2P35548 AC135050.2-203ENST00000529564 725 ntAPPRIS P1 TSL 4 BASIC14.39□□□□□ -0.11
MSX2P35548 AC022167.4-201ENST00000570290 498 ntTSL 3 BASIC14.39□□□□□ -0.11
MSX2P35548 AC055811.1-201ENST00000584203 1231 ntTSL 5 BASIC14.39□□□□□ -0.11
MSX2P35548 AC008738.3-201ENST00000589932 659 ntTSL 2 BASIC14.39□□□□□ -0.11
MSX2P35548 AP2S1-204ENST00000597020 707 ntTSL 1 (best) BASIC14.39□□□□□ -0.11
MSX2P35548 AL133215.2-201ENST00000609242 977 ntBASIC14.39□□□□□ -0.11
MSX2P35548 PRDM6-201ENST00000407847 9267 ntAPPRIS P1 TSL 5 BASIC14.39□□□□□ -0.11
MSX2P35548 LINC02346-201ENST00000383019 1967 ntTSL 2 BASIC14.39□□□□□ -0.11
MSX2P35548 HNRNPH1-204ENST00000442819 2248 ntAPPRIS P1 TSL 1 (best) BASIC14.39□□□□□ -0.11
MSX2P35548 POLL-204ENST00000370168 1536 ntTSL 1 (best) BASIC14.39□□□□□ -0.11
MSX2P35548 TCP1-201ENST00000321394 2499 ntAPPRIS P1 TSL 1 (best) BASIC14.39□□□□□ -0.11
MSX2P35548 ACTL9-201ENST00000324436 1426 ntAPPRIS P1 BASIC14.39□□□□□ -0.11
MSX2P35548 CRTC3-208ENST00000560098 1421 ntTSL 1 (best) BASIC14.39□□□□□ -0.11
MSX2P35548 CCHCR1-203ENST00000396268 2958 ntAPPRIS ALT2 TSL 1 (best) BASIC14.39□□□□□ -0.11
MSX2P35548 ARHGEF10-207ENST00000520359 5472 ntAPPRIS ALT2 TSL 1 (best) BASIC14.39□□□□□ -0.11
MSX2P35548 RPS6KC1-208ENST00000614059 4188 ntTSL 1 (best) BASIC14.39□□□□□ -0.11
MSX2P35548 ANKMY1-206ENST00000401804 3232 ntAPPRIS ALT2 TSL 1 (best) BASIC14.39□□□□□ -0.11
MSX2P35548 CD276-202ENST00000318443 3469 ntAPPRIS P2 TSL 2 BASIC14.39□□□□□ -0.11
MSX2P35548 KDM6B-201ENST00000254846 6713 ntAPPRIS P2 TSL 1 (best) BASIC14.39□□□□□ -0.11
MSX2P35548 ANKRD42-201ENST00000260047 2514 ntTSL 1 (best) BASIC14.39□□□□□ -0.11
MSX2P35548 ZFP64-203ENST00000361387 2545 ntAPPRIS P1 TSL 1 (best) BASIC14.39□□□□□ -0.11
MSX2P35548 CORO1A-208ENST00000565497 1348 ntTSL 5 BASIC14.39□□□□□ -0.11
MSX2P35548 INTS5-201ENST00000330574 3285 ntAPPRIS P1 TSL 1 (best) BASIC14.39□□□□□ -0.11
MSX2P35548 ZNF641-201ENST00000301042 4544 ntTSL 5 BASIC14.38□□□□□ -0.11
MSX2P35548 AP1B1-201ENST00000317368 3903 ntTSL 1 (best) BASIC14.38□□□□□ -0.11
MSX2P35548 ABCC6-208ENST00000622290 4941 ntTSL 5 BASIC14.38□□□□□ -0.11
MSX2P35548 FGFRL1-201ENST00000264748 3100 ntAPPRIS P1 TSL 1 (best) BASIC14.38□□□□□ -0.11
MSX2P35548 GRIN1-202ENST00000371546 4114 ntTSL 5 BASIC14.38□□□□□ -0.11
MSX2P35548 GSKIP-201ENST00000438650 2140 ntAPPRIS P1 TSL 2 BASIC14.38□□□□□ -0.11
MSX2P35548 INE2-201ENST00000630399 1874 ntBASIC14.38□□□□□ -0.11
MSX2P35548 GNAO1-214ENST00000638705 3529 ntAPPRIS P5 TSL 1 (best) BASIC14.38□□□□□ -0.11
MSX2P35548 LDHAL6A-201ENST00000280706 2526 ntAPPRIS P1 TSL 2 BASIC14.38□□□□□ -0.11
MSX2P35548 MAP3K21-202ENST00000366623 3910 ntAPPRIS ALT2 TSL 1 (best) BASIC14.38□□□□□ -0.11
MSX2P35548 GOLGA8VP-201ENST00000559009 1798 ntBASIC14.38□□□□□ -0.11
MSX2P35548 CTSD-207ENST00000636571 1790 ntAPPRIS ALT2 TSL 5 BASIC14.38□□□□□ -0.11
MSX2P35548 ATP8B3-201ENST00000310127 5095 ntAPPRIS P3 TSL 1 (best) BASIC14.38□□□□□ -0.11
MSX2P35548 GNB2-202ENST00000393924 1524 ntAPPRIS P1 TSL 1 (best) BASIC14.38□□□□□ -0.11
MSX2P35548 KIAA2026-201ENST00000381461 6884 ntTSL 5 BASIC14.38□□□□□ -0.11
MSX2P35548 BAX-203ENST00000354470 433 ntTSL 1 (best) BASIC14.38□□□□□ -0.11
MSX2P35548 HIST1H2BL-201ENST00000377401 488 ntAPPRIS P1 BASIC14.38□□□□□ -0.11
MSX2P35548 PDLIM4-202ENST00000379018 1006 ntTSL 1 (best) BASIC14.38□□□□□ -0.11
MSX2P35548 CD81-202ENST00000381036 880 ntTSL 3 BASIC14.38□□□□□ -0.11
MSX2P35548 VCX-202ENST00000381059 967 ntAPPRIS P2 TSL 1 (best) BASIC14.38□□□□□ -0.11
MSX2P35548 AL589923.1-201ENST00000441473 316 ntTSL 5 BASIC14.38□□□□□ -0.11
MSX2P35548 FAAHP1-202ENST00000446499 1238 ntBASIC14.38□□□□□ -0.11
MSX2P35548 AC009078.2-202ENST00000463353 338 ntBASIC14.38□□□□□ -0.11
MSX2P35548 FAM86HP-203ENST00000511564 521 ntTSL 2 BASIC14.38□□□□□ -0.11
MSX2P35548 HIST4H4-204ENST00000539745 577 ntAPPRIS P1 BASIC14.38□□□□□ -0.11
MSX2P35548 AC025162.1-201ENST00000554022 565 ntTSL 4 BASIC14.38□□□□□ -0.11
MSX2P35548 PAX9-204ENST00000554201 1289 ntTSL 2 BASIC14.38□□□□□ -0.11
MSX2P35548 AC005330.1-201ENST00000590086 1238 ntTSL 5 BASIC14.38□□□□□ -0.11
MSX2P35548 LINC00237-203ENST00000593272 630 ntTSL 4 BASIC14.38□□□□□ -0.11
MSX2P35548 LINC00466-208ENST00000635218 1217 ntTSL 5 BASIC14.38□□□□□ -0.11
MSX2P35548 AC084121.4-201ENST00000641598 221 ntBASIC14.38□□□□□ -0.11
MSX2P35548 AF228730.8-201ENST00000642140 221 ntBASIC14.38□□□□□ -0.11
MSX2P35548 TMEM123-201ENST00000361236 3321 ntAPPRIS ALT2 TSL 1 (best) BASIC14.38□□□□□ -0.11
MSX2P35548 NCBP2-204ENST00000427641 1946 ntTSL 2 BASIC14.38□□□□□ -0.11
MSX2P35548 RBP1-203ENST00000483943 1935 ntTSL 2 BASIC14.38□□□□□ -0.11
MSX2P35548 RHNO1-202ENST00000461997 1655 ntAPPRIS ALT2 TSL 2 BASIC14.38□□□□□ -0.11
MSX2P35548 ACTL8-202ENST00000617065 1670 ntAPPRIS P1 TSL 2 BASIC14.38□□□□□ -0.11
MSX2P35548 RBFA-202ENST00000306735 1407 ntAPPRIS P1 TSL 1 (best) BASIC14.38□□□□□ -0.11
MSX2P35548 ECHDC1-220ENST00000528402 1449 ntTSL 1 (best) BASIC14.38□□□□□ -0.11
MSX2P35548 REV1-202ENST00000393445 4686 ntAPPRIS ALT1 TSL 1 (best) BASIC14.38□□□□□ -0.11
MSX2P35548 MPZ-204ENST00000491222 1824 ntTSL 2 BASIC14.38□□□□□ -0.11
MSX2P35548 ARHGEF37-201ENST00000333677 4968 ntAPPRIS P1 TSL 2 BASIC14.38□□□□□ -0.11
MSX2P35548 METTL17-202ENST00000382985 1586 ntAPPRIS ALT2 TSL 1 (best) BASIC14.38□□□□□ -0.11
MSX2P35548 DMTN-209ENST00000517600 1569 ntTSL 5 BASIC14.38□□□□□ -0.11
MSX2P35548 KRT8P24-201ENST00000560290 1559 ntBASIC14.38□□□□□ -0.11
MSX2P35548 RNASE1-202ENST00000397967 1348 ntAPPRIS P1 TSL 1 (best) BASIC14.38□□□□□ -0.11
MSX2P35548 GET4-202ENST00000407192 4356 ntAPPRIS ALT2 TSL 1 (best) BASIC14.38□□□□□ -0.11
MSX2P35548 GHRLOS-201ENST00000439539 1708 ntTSL 1 (best) BASIC14.38□□□□□ -0.11
MSX2P35548 ELFN2-207ENST00000613079 8360 ntAPPRIS P1 TSL 4 BASIC14.38□□□□□ -0.11
MSX2P35548 FBXO22-202ENST00000453211 1486 ntTSL 2 BASIC14.38□□□□□ -0.11
MSX2P35548 NDRG4-255ENST00000570248 3207 ntAPPRIS P2 TSL 1 (best) BASIC14.37□□□□□ -0.11
MSX2P35548 PDE2A-206ENST00000444035 4193 ntAPPRIS ALT1 TSL 5 BASIC14.37□□□□□ -0.11
MSX2P35548 PRPF3-201ENST00000324862 2433 ntAPPRIS P1 TSL 1 (best) BASIC14.37□□□□□ -0.11
MSX2P35548 TDRD5-201ENST00000294848 3525 ntAPPRIS P3 TSL 1 (best) BASIC14.37□□□□□ -0.11
MSX2P35548 KLHL21-201ENST00000377658 4487 ntAPPRIS P1 TSL 1 (best) BASIC14.37□□□□□ -0.11
MSX2P35548 HMGA2-204ENST00000403681 4473 ntAPPRIS P3 TSL 1 (best) BASIC14.37□□□□□ -0.11
MSX2P35548 TLE3-211ENST00000557997 3683 ntAPPRIS ALT1 TSL 1 (best) BASIC14.37□□□□□ -0.11
MSX2P35548 TMEM200A-204ENST00000617887 2899 ntAPPRIS P1 TSL 2 BASIC14.37□□□□□ -0.11
MSX2P35548 HMGN1-204ENST00000380749 1383 ntAPPRIS P1 TSL 1 (best) BASIC14.37□□□□□ -0.11
MSX2P35548 KRT8P12-202ENST00000472924 1397 ntBASIC14.37□□□□□ -0.11
MSX2P35548 ASNA1-204ENST00000591090 1368 ntAPPRIS P1 TSL 5 BASIC14.37□□□□□ -0.11
MSX2P35548 AC111170.3-201ENST00000624282 2464 ntBASIC14.37□□□□□ -0.11
MSX2P35548 STRADA-243ENST00000640086 1925 ntTSL 5 BASIC14.37□□□□□ -0.11
MSX2P35548 SLC43A2-202ENST00000412517 1658 ntTSL 2 BASIC14.37□□□□□ -0.11
MSX2P35548 YWHAE-208ENST00000571732 1818 ntTSL 1 (best) BASIC14.37□□□□□ -0.11
MSX2P35548 C20orf203-202ENST00000608990 5076 ntTSL 1 (best) BASIC14.37□□□□□ -0.11
MSX2P35548 C8orf49-201ENST00000525043 1968 ntBASIC14.37□□□□□ -0.11
MSX2P35548 DLGAP1-204ENST00000400149 5203 ntTSL 5 BASIC14.37□□□□□ -0.11
MSX2P35548 ABCA7-203ENST00000435683 6211 ntAPPRIS ALT2 TSL 5 BASIC14.37□□□□□ -0.11
MSX2P35548 STPG3-201ENST00000388931 1207 ntTSL 1 (best) BASIC14.37□□□□□ -0.11
MSX2P35548 EEF1B2-202ENST00000392221 880 ntAPPRIS P1 TSL 2 BASIC14.37□□□□□ -0.11
MSX2P35548 RHOG-203ENST00000396979 1289 ntAPPRIS P1 TSL 3 BASIC14.37□□□□□ -0.11
MSX2P35548 VAC14-AS1-201ENST00000398177 2145 ntTSL 2 BASIC14.37□□□□□ -0.11
MSX2P35548 LINC00029-202ENST00000414668 1117 ntTSL 1 (best) BASIC14.37□□□□□ -0.11
Retrieved 100 of 98,524 protein–RNA pairs in 39.2 ms