Protein–RNA interactions for Protein: P09429

HMGB1, High mobility group protein B1, humanhuman

Known RBP Predictions only

Length 215 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HMGB1P09429 SLC52A3-202ENST00000381944 3060 ntTSL 2 BASIC17.68■□□□□ 0.42
HMGB1P09429 AL512384.1-201ENST00000406683 331 ntBASIC17.68■□□□□ 0.42
HMGB1P09429 AC105940.2-201ENST00000421055 380 ntTSL 3 BASIC17.68■□□□□ 0.42
HMGB1P09429 ARL6IP4-207ENST00000426960 910 ntAPPRIS ALT2 TSL 3 BASIC17.68■□□□□ 0.42
HMGB1P09429 Z98749.2-207ENST00000443658 679 ntTSL 2 BASIC17.68■□□□□ 0.42
HMGB1P09429 NUTM2A-AS1-212ENST00000458739 733 ntTSL 1 (best) BASIC17.68■□□□□ 0.42
HMGB1P09429 FTLP10-202ENST00000505798 471 ntBASIC17.68■□□□□ 0.42
HMGB1P09429 AC022447.6-201ENST00000515522 438 ntBASIC17.68■□□□□ 0.42
HMGB1P09429 CLNS1A-210ENST00000528364 953 ntAPPRIS P1 TSL 3 BASIC17.68■□□□□ 0.42
HMGB1P09429 TSPAN11-204ENST00000546076 1058 ntAPPRIS P1 TSL 2 BASIC17.68■□□□□ 0.42
HMGB1P09429 ZNF385A-205ENST00000546970 2494 ntTSL 1 (best) BASIC17.68■□□□□ 0.42
HMGB1P09429 P2RX5-207ENST00000551178 1863 ntTSL 1 (best) BASIC17.68■□□□□ 0.42
HMGB1P09429 AC007611.1-201ENST00000568150 826 ntTSL 2 BASIC17.68■□□□□ 0.42
HMGB1P09429 AC025279.2-201ENST00000569730 653 ntBASIC17.68■□□□□ 0.42
HMGB1P09429 ZSCAN30-208ENST00000592278 731 ntTSL 4 BASIC17.68■□□□□ 0.42
HMGB1P09429 PAX4-207ENST00000611453 1235 ntTSL 5 BASIC17.68■□□□□ 0.42
HMGB1P09429 AC138466.3-201ENST00000619983 221 ntBASIC17.68■□□□□ 0.42
HMGB1P09429 VCX-203ENST00000620630 812 ntAPPRIS ALT2 TSL 5 BASIC17.68■□□□□ 0.42
HMGB1P09429 AL160035.1-201ENST00000637583 576 ntTSL 4 BASIC17.68■□□□□ 0.42
HMGB1P09429 CACNA1G-205ENST00000360761 7497 ntAPPRIS ALT2 TSL 1 (best) BASIC17.68■□□□□ 0.42
HMGB1P09429 FNDC1-201ENST00000297267 6552 ntAPPRIS P1 TSL 1 (best) BASIC17.68■□□□□ 0.42
HMGB1P09429 PWP2-201ENST00000291576 3297 ntAPPRIS P1 TSL 1 (best) BASIC17.68■□□□□ 0.42
HMGB1P09429 SIGLEC5-201ENST00000534261 2360 ntAPPRIS P1 TSL 5 BASIC17.68■□□□□ 0.42
HMGB1P09429 GRB2-201ENST00000316615 3181 ntTSL 5 BASIC17.68■□□□□ 0.42
HMGB1P09429 COMT-205ENST00000406520 1339 ntAPPRIS P3 TSL 1 (best) BASIC17.68■□□□□ 0.42
HMGB1P09429 CAVIN1-201ENST00000357037 3828 ntAPPRIS P1 TSL 1 (best) BASIC17.68■□□□□ 0.42
HMGB1P09429 SLC5A10-202ENST00000395643 1982 ntTSL 1 (best) BASIC17.68■□□□□ 0.42
HMGB1P09429 C1orf159-202ENST00000379320 2324 ntAPPRIS ALT2 TSL 2 BASIC17.67■□□□□ 0.42
HMGB1P09429 TRMT1-201ENST00000221504 2179 ntAPPRIS ALT2 TSL 1 (best) BASIC17.67■□□□□ 0.42
HMGB1P09429 CERS3-202ENST00000394113 2045 ntAPPRIS P1 TSL 1 (best) BASIC17.67■□□□□ 0.42
HMGB1P09429 GLIS2-201ENST00000262366 4469 ntAPPRIS P1 TSL 2 BASIC17.67■□□□□ 0.42
HMGB1P09429 ERN2-202ENST00000457008 3169 ntAPPRIS ALT2 TSL 1 (best) BASIC17.67■□□□□ 0.42
HMGB1P09429 MKS1-202ENST00000393119 2397 ntAPPRIS P1 TSL 1 (best) BASIC17.67■□□□□ 0.42
HMGB1P09429 TBP-206ENST00000540980 1701 ntAPPRIS ALT2 TSL 2 BASIC17.67■□□□□ 0.42
HMGB1P09429 CROCC-201ENST00000375541 6656 ntAPPRIS P1 TSL 5 BASIC17.67■□□□□ 0.42
HMGB1P09429 FGR-203ENST00000374005 2729 ntAPPRIS P1 TSL 1 (best) BASIC17.67■□□□□ 0.42
HMGB1P09429 GCK-204ENST00000403799 2729 ntAPPRIS P1 TSL 1 (best) BASIC17.67■□□□□ 0.42
HMGB1P09429 AP001267.2-201ENST00000532619 2086 ntBASIC17.67■□□□□ 0.42
HMGB1P09429 PRR23C-201ENST00000413199 2791 ntAPPRIS P1 BASIC17.67■□□□□ 0.42
HMGB1P09429 RNASEH2B-202ENST00000422660 4830 ntTSL 5 BASIC17.67■□□□□ 0.42
HMGB1P09429 NDUFB7-201ENST00000215565 531 ntAPPRIS P1 TSL 1 (best) BASIC17.67■□□□□ 0.42
HMGB1P09429 UEVLD-201ENST00000300038 995 ntTSL 1 (best) BASIC17.67■□□□□ 0.42
HMGB1P09429 NINJ2-201ENST00000305108 1252 ntAPPRIS P3 TSL 1 (best) BASIC17.67■□□□□ 0.42
HMGB1P09429 PQLC2L-201ENST00000312275 1201 ntAPPRIS ALT2 TSL 1 (best) BASIC17.67■□□□□ 0.42
HMGB1P09429 RN7SKP230-201ENST00000365642 335 ntBASIC17.67■□□□□ 0.42
HMGB1P09429 TNNI1-203ENST00000367312 1100 ntAPPRIS P2 TSL 5 BASIC17.67■□□□□ 0.42
HMGB1P09429 RPL28-203ENST00000428193 573 ntTSL 2 BASIC17.67■□□□□ 0.42
HMGB1P09429 AL157832.1-201ENST00000428273 495 ntTSL 2 BASIC17.67■□□□□ 0.42
HMGB1P09429 RPL28-204ENST00000431533 590 ntTSL 2 BASIC17.67■□□□□ 0.42
HMGB1P09429 AC128709.1-201ENST00000445908 600 ntTSL 3 BASIC17.67■□□□□ 0.42
HMGB1P09429 INE1-201ENST00000456273 945 ntBASIC17.67■□□□□ 0.42
HMGB1P09429 HOXB3-204ENST00000465120 943 ntTSL 3 BASIC17.67■□□□□ 0.42
HMGB1P09429 AC106760.1-201ENST00000508690 800 ntBASIC17.67■□□□□ 0.42
HMGB1P09429 SLC45A2-204ENST00000509381 1040 ntTSL 1 (best) BASIC17.67■□□□□ 0.42
HMGB1P09429 SLC25A47P1-201ENST00000531577 414 ntBASIC17.67■□□□□ 0.42
HMGB1P09429 COX14-203ENST00000550487 739 ntAPPRIS P1 TSL 1 (best) BASIC17.67■□□□□ 0.42
HMGB1P09429 AC138123.2-203ENST00000552451 653 ntTSL 3 BASIC17.67■□□□□ 0.42
HMGB1P09429 LINC01595-201ENST00000555406 639 ntTSL 3 BASIC17.67■□□□□ 0.42
HMGB1P09429 RPL28-207ENST00000558815 616 ntTSL 2 BASIC17.67■□□□□ 0.42
HMGB1P09429 DKKL1-202ENST00000594268 524 ntAPPRIS ALT2 TSL 2 BASIC17.67■□□□□ 0.42
HMGB1P09429 SLC38A5-212ENST00000619100 2100 ntTSL 2 BASIC17.67■□□□□ 0.42
HMGB1P09429 C9orf50-202ENST00000619117 796 ntAPPRIS ALT2 TSL 1 (best) BASIC17.67■□□□□ 0.42
HMGB1P09429 SLC38A5-214ENST00000622196 2100 ntTSL 5 BASIC17.67■□□□□ 0.42
HMGB1P09429 AC044839.1-204ENST00000634777 1058 ntTSL 5 BASIC17.67■□□□□ 0.42
HMGB1P09429 PSMG3-AS1-201ENST00000437621 5701 ntTSL 1 (best) BASIC17.67■□□□□ 0.42
HMGB1P09429 AC068418.2-201ENST00000577309 3703 ntBASIC17.67■□□□□ 0.42
HMGB1P09429 MRPL37P1-201ENST00000592451 1337 ntBASIC17.67■□□□□ 0.42
HMGB1P09429 ANKRD46-205ENST00000520311 3270 ntAPPRIS P1 TSL 2 BASIC17.67■□□□□ 0.42
HMGB1P09429 HCK-209ENST00000538448 2215 ntAPPRIS ALT2 TSL 2 BASIC17.67■□□□□ 0.42
HMGB1P09429 NFIX-208ENST00000587260 1537 ntTSL 1 (best) BASIC17.67■□□□□ 0.42
HMGB1P09429 RNPS1-216ENST00000565678 2298 ntAPPRIS P1 TSL 1 (best) BASIC17.67■□□□□ 0.42
HMGB1P09429 SHH-201ENST00000297261 4454 ntAPPRIS P1 TSL 1 (best) BASIC17.66■□□□□ 0.42
HMGB1P09429 TMEM51-204ENST00000428417 1942 ntAPPRIS P1 TSL 3 BASIC17.66■□□□□ 0.42
HMGB1P09429 MED29-204ENST00000599213 2490 ntAPPRIS ALT2 TSL 1 (best) BASIC17.66■□□□□ 0.42
HMGB1P09429 LARP4-219ENST00000614335 1949 ntTSL 5 BASIC17.66■□□□□ 0.42
HMGB1P09429 LINC02273-201ENST00000499452 1592 ntTSL 1 (best) BASIC17.66■□□□□ 0.42
HMGB1P09429 SLC7A4-202ENST00000403586 2307 ntAPPRIS P1 TSL 1 (best) BASIC17.66■□□□□ 0.42
HMGB1P09429 ZNF576-203ENST00000525771 2327 ntAPPRIS P1 TSL 2 BASIC17.66■□□□□ 0.42
HMGB1P09429 CCNY-201ENST00000265375 4768 ntAPPRIS ALT1 TSL 1 (best) BASIC17.66■□□□□ 0.42
HMGB1P09429 PES1-201ENST00000335214 1988 ntAPPRIS ALT1 TSL 1 (best) BASIC17.66■□□□□ 0.42
HMGB1P09429 CRB2-201ENST00000359999 3659 ntTSL 2 BASIC17.66■□□□□ 0.42
HMGB1P09429 AQP1-201ENST00000311813 2913 ntAPPRIS P1 TSL 1 (best) BASIC17.66■□□□□ 0.42
HMGB1P09429 PCDHA7-201ENST00000356878 2922 ntAPPRIS ALT2 BASIC17.66■□□□□ 0.42
HMGB1P09429 SYNPO2L-202ENST00000394810 4921 ntAPPRIS P1 TSL 1 (best) BASIC17.66■□□□□ 0.42
HMGB1P09429 B4GALT3-213ENST00000622395 2414 ntAPPRIS P1 TSL 1 (best) BASIC17.66■□□□□ 0.42
HMGB1P09429 FGF6-201ENST00000228837 743 ntAPPRIS P1 TSL 1 (best) BASIC17.66■□□□□ 0.42
HMGB1P09429 TPM3P8-201ENST00000330554 643 ntBASIC17.66■□□□□ 0.42
HMGB1P09429 NCR1-202ENST00000338835 973 ntAPPRIS ALT2 TSL 1 (best) BASIC17.66■□□□□ 0.42
HMGB1P09429 NCR1-203ENST00000350790 739 ntTSL 1 (best) BASIC17.66■□□□□ 0.42
HMGB1P09429 CRIP1-202ENST00000392531 485 ntAPPRIS P1 TSL 2 BASIC17.66■□□□□ 0.42
HMGB1P09429 AC092933.1-201ENST00000393644 945 ntBASIC17.66■□□□□ 0.42
HMGB1P09429 LINC01759-201ENST00000412639 985 ntTSL 3 BASIC17.66■□□□□ 0.42
HMGB1P09429 AC099552.1-201ENST00000431083 744 ntTSL 5 BASIC17.66■□□□□ 0.42
HMGB1P09429 AP000552.1-208ENST00000452952 576 ntTSL 4 BASIC17.66■□□□□ 0.42
HMGB1P09429 TMEM14B-204ENST00000461342 559 ntTSL 2 BASIC17.66■□□□□ 0.42
HMGB1P09429 GCOM2-201ENST00000509133 1104 ntBASIC17.66■□□□□ 0.42
HMGB1P09429 MRNIP-212ENST00000520698 902 ntAPPRIS ALT2 TSL 2 BASIC17.66■□□□□ 0.42
HMGB1P09429 AP005018.1-201ENST00000525475 301 ntBASIC17.66■□□□□ 0.42
HMGB1P09429 C12orf10-204ENST00000548632 988 ntTSL 1 (best) BASIC17.66■□□□□ 0.42
HMGB1P09429 GNRHR2-203ENST00000581100 1187 ntBASIC17.66■□□□□ 0.42
Retrieved 100 of 98,524 protein–RNA pairs in 81.9 ms