Protein–RNA interactions for Protein: P02461

COL3A1, Collagen alpha-1(III) chain, humanhuman

Predicted RBP Predictions only

Length 1,466 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL3A1P02461 MAD2L2-206ENST00000376672 1002 ntTSL 3 BASIC19.4■□□□□ 0.7
COL3A1P02461 KCNAB2-207ENST00000378111 822 ntTSL 3 BASIC19.4■□□□□ 0.7
COL3A1P02461 APRT-201ENST00000378364 947 ntAPPRIS P1 TSL 1 (best) BASIC19.4■□□□□ 0.7
COL3A1P02461 SGCE-204ENST00000428696 1409 ntTSL 1 (best) BASIC19.4■□□□□ 0.7
COL3A1P02461 NCBP2-206ENST00000447325 2216 ntTSL 2 BASIC19.4■□□□□ 0.7
COL3A1P02461 GTF2IRD1-203ENST00000455841 3315 ntTSL 1 (best) BASIC19.4■□□□□ 0.7
COL3A1P02461 EIF3M-203ENST00000524896 1207 ntTSL 2 BASIC19.4■□□□□ 0.7
COL3A1P02461 TPO-215ENST00000539820 1157 ntTSL 1 (best) BASIC19.4■□□□□ 0.7
COL3A1P02461 TUBB4A-212ENST00000601152 590 ntTSL 4 BASIC19.4■□□□□ 0.7
COL3A1P02461 PPA1-206ENST00000625364 644 ntTSL 5 BASIC19.4■□□□□ 0.7
COL3A1P02461 DGKI-201ENST00000288490 3895 ntAPPRIS P3 TSL 5 BASIC19.39■□□□□ 0.7
COL3A1P02461 PHF3-209ENST00000509330 2969 ntTSL 1 (best) BASIC19.39■□□□□ 0.7
COL3A1P02461 ZNF7-207ENST00000528372 2905 ntAPPRIS P3 TSL 1 (best) BASIC19.39■□□□□ 0.7
COL3A1P02461 CYTH2-214ENST00000641098 2721 ntAPPRIS ALT1 BASIC19.39■□□□□ 0.7
COL3A1P02461 ANKRD6-202ENST00000369408 5258 ntTSL 1 (best) BASIC19.39■□□□□ 0.7
COL3A1P02461 TNFAIP8L3-201ENST00000327536 2262 ntTSL 1 (best) BASIC19.39■□□□□ 0.69
COL3A1P02461 MAPK8IP3-202ENST00000356010 4456 ntTSL 5 BASIC19.39■□□□□ 0.69
COL3A1P02461 AC007603.1-201ENST00000563124 2085 ntTSL 2 BASIC19.39■□□□□ 0.69
COL3A1P02461 TRIM23-202ENST00000274327 1829 ntTSL 1 (best) BASIC19.39■□□□□ 0.69
COL3A1P02461 FCHSD2-204ENST00000409418 3154 ntAPPRIS P1 TSL 2 BASIC19.39■□□□□ 0.69
COL3A1P02461 NFKB2-203ENST00000369966 3101 ntAPPRIS P4 TSL 1 (best) BASIC19.39■□□□□ 0.69
COL3A1P02461 USP32-201ENST00000300896 5171 ntAPPRIS P1 TSL 1 (best) BASIC19.39■□□□□ 0.69
COL3A1P02461 ALKBH2-201ENST00000343075 1030 ntAPPRIS P1 TSL 1 (best) BASIC19.39■□□□□ 0.69
COL3A1P02461 PARVG-202ENST00000415224 999 ntTSL 2 BASIC19.39■□□□□ 0.69
COL3A1P02461 AL157373.2-201ENST00000437559 784 ntTSL 3 BASIC19.39■□□□□ 0.69
COL3A1P02461 MSRA-203ENST00000441698 788 ntTSL 2 BASIC19.39■□□□□ 0.69
COL3A1P02461 MANEAL-204ENST00000525897 1294 ntTSL 2 BASIC19.39■□□□□ 0.69
COL3A1P02461 RHOQP1-201ENST00000555758 579 ntBASIC19.39■□□□□ 0.69
COL3A1P02461 AC025259.3-202ENST00000564363 687 ntTSL 2 BASIC19.39■□□□□ 0.69
COL3A1P02461 FGFR3P5-201ENST00000564496 886 ntBASIC19.39■□□□□ 0.69
COL3A1P02461 MAP3K14-AS1-210ENST00000592422 831 ntTSL 3 BASIC19.39■□□□□ 0.69
COL3A1P02461 DLGAP1-214ENST00000539435 2402 ntTSL 2 BASIC19.39■□□□□ 0.69
COL3A1P02461 DGKZ-205ENST00000456247 3482 ntAPPRIS ALT2 TSL 1 (best) BASIC19.39■□□□□ 0.69
COL3A1P02461 TBRG4-215ENST00000494076 2190 ntAPPRIS P1 TSL 2 BASIC19.39■□□□□ 0.69
COL3A1P02461 FLVCR1-201ENST00000366971 5939 ntAPPRIS P1 TSL 1 (best) BASIC19.39■□□□□ 0.69
COL3A1P02461 MBD1-222ENST00000590208 2913 ntAPPRIS ALT2 TSL 1 (best) BASIC19.39■□□□□ 0.69
COL3A1P02461 ZNF280D-205ENST00000559000 4726 ntAPPRIS ALT2 TSL 2 BASIC19.39■□□□□ 0.69
COL3A1P02461 AL157791.1-201ENST00000553667 1699 ntBASIC19.38■□□□□ 0.69
COL3A1P02461 LINC00680-205ENST00000450081 1593 ntTSL 1 (best) BASIC19.38■□□□□ 0.69
COL3A1P02461 FP565260.2-201ENST00000623476 1599 ntAPPRIS P1 TSL 3 BASIC19.38■□□□□ 0.69
COL3A1P02461 SUOX-202ENST00000356124 2306 ntAPPRIS P1 TSL 1 (best) BASIC19.38■□□□□ 0.69
COL3A1P02461 BDP1-202ENST00000380675 2861 ntAPPRIS ALT2 TSL 5 BASIC19.38■□□□□ 0.69
COL3A1P02461 BTBD8-201ENST00000342818 1412 ntAPPRIS P1 TSL 1 (best) BASIC19.38■□□□□ 0.69
COL3A1P02461 FP565260.6-203ENST00000620015 1435 ntTSL 3 BASIC19.38■□□□□ 0.69
COL3A1P02461 ARNT-202ENST00000358595 4887 ntAPPRIS P3 TSL 1 (best) BASIC19.38■□□□□ 0.69
COL3A1P02461 ENC1-205ENST00000510316 5381 ntTSL 2 BASIC19.38■□□□□ 0.69
COL3A1P02461 DUSP13-208ENST00000478873 1335 ntTSL 5 BASIC19.38■□□□□ 0.69
COL3A1P02461 UNKL-204ENST00000389221 5116 ntAPPRIS ALT2 TSL 5 BASIC19.38■□□□□ 0.69
COL3A1P02461 MIR769-201ENST00000390225 118 ntBASIC19.38■□□□□ 0.69
COL3A1P02461 SLC25A24P2-201ENST00000415059 510 ntBASIC19.38■□□□□ 0.69
COL3A1P02461 TMEM243-202ENST00000423734 601 ntTSL 2 BASIC19.38■□□□□ 0.69
COL3A1P02461 AL157392.3-216ENST00000437446 462 ntTSL 3 BASIC19.38■□□□□ 0.69
COL3A1P02461 ZNF529-AS1-201ENST00000448373 1004 ntTSL 2 BASIC19.38■□□□□ 0.69
COL3A1P02461 ZSCAN32-210ENST00000573830 668 ntTSL 3 BASIC19.38■□□□□ 0.69
COL3A1P02461 MFSD11-218ENST00000591864 446 ntTSL 1 (best) BASIC19.38■□□□□ 0.69
COL3A1P02461 AC090386.2-201ENST00000623010 1039 ntBASIC19.38■□□□□ 0.69
COL3A1P02461 SGCE-202ENST00000415788 1871 ntTSL 2 BASIC19.38■□□□□ 0.69
COL3A1P02461 PTBP1-203ENST00000356948 3598 ntAPPRIS ALT1 TSL 1 (best) BASIC19.38■□□□□ 0.69
COL3A1P02461 AC097359.2-201ENST00000604992 2389 ntBASIC19.38■□□□□ 0.69
COL3A1P02461 RASGEF1B-202ENST00000335927 1756 ntTSL 1 (best) BASIC19.38■□□□□ 0.69
COL3A1P02461 ABHD13-201ENST00000375898 5338 ntAPPRIS P1 TSL 1 (best) BASIC19.38■□□□□ 0.69
COL3A1P02461 RBBP4-204ENST00000414241 1788 ntAPPRIS ALT1 TSL 1 (best) BASIC19.38■□□□□ 0.69
COL3A1P02461 RN7SL832P-201ENST00000607781 1756 ntBASIC19.38■□□□□ 0.69
COL3A1P02461 GPRC5B-201ENST00000300571 5213 ntAPPRIS P2 TSL 1 (best) BASIC19.38■□□□□ 0.69
COL3A1P02461 FBXL21-202ENST00000467490 1742 ntTSL 1 (best) BASIC19.38■□□□□ 0.69
COL3A1P02461 ASCC2-201ENST00000307790 2793 ntAPPRIS P1 TSL 1 (best) BASIC19.38■□□□□ 0.69
COL3A1P02461 ANKRD35-201ENST00000355594 3342 ntAPPRIS P1 TSL 2 BASIC19.38■□□□□ 0.69
COL3A1P02461 SMARCD1-202ENST00000394963 3658 ntAPPRIS P1 TSL 1 (best) BASIC19.38■□□□□ 0.69
COL3A1P02461 AP002353.1-201ENST00000528257 1599 ntBASIC19.38■□□□□ 0.69
COL3A1P02461 OR3A2-205ENST00000641164 2033 ntAPPRIS P1 BASIC19.38■□□□□ 0.69
COL3A1P02461 CAMK2A-203ENST00000398376 1493 ntTSL 1 (best) BASIC19.37■□□□□ 0.69
COL3A1P02461 DBET-201ENST00000630918 3363 ntBASIC19.37■□□□□ 0.69
COL3A1P02461 SPOCK3-226ENST00000541354 2797 ntTSL 2 BASIC19.37■□□□□ 0.69
COL3A1P02461 DIRC2-201ENST00000261038 3596 ntAPPRIS P1 TSL 1 (best) BASIC19.37■□□□□ 0.69
COL3A1P02461 SCFD2-201ENST00000388940 2221 ntTSL 2 BASIC19.37■□□□□ 0.69
COL3A1P02461 EP400-203ENST00000333577 3092 ntTSL 1 (best) BASIC19.37■□□□□ 0.69
COL3A1P02461 GLIDR-202ENST00000625350 2588 ntTSL 1 (best) BASIC19.37■□□□□ 0.69
COL3A1P02461 DKK4-201ENST00000220812 894 ntAPPRIS P1 TSL 1 (best) BASIC19.37■□□□□ 0.69
COL3A1P02461 TMSB10-201ENST00000233143 496 ntAPPRIS P1 TSL 1 (best) BASIC19.37■□□□□ 0.69
COL3A1P02461 RHCE-202ENST00000340849 1087 ntTSL 1 (best) BASIC19.37■□□□□ 0.69
COL3A1P02461 AC079807.2-203ENST00000417692 656 ntTSL 2 BASIC19.37■□□□□ 0.69
COL3A1P02461 AL008707.1-201ENST00000422498 534 ntBASIC19.37■□□□□ 0.69
COL3A1P02461 LEF1-AS1-204ENST00000508266 559 ntTSL 4 BASIC19.37■□□□□ 0.69
COL3A1P02461 RNA5SP423-201ENST00000517127 109 ntBASIC19.37■□□□□ 0.69
COL3A1P02461 ERH-203ENST00000557016 1124 ntAPPRIS P1 TSL 1 (best) BASIC19.37■□□□□ 0.69
COL3A1P02461 AC011498.6-201ENST00000592034 510 ntTSL 5 BASIC19.37■□□□□ 0.69
COL3A1P02461 ACP7-202ENST00000594229 1149 ntTSL 5 BASIC19.37■□□□□ 0.69
COL3A1P02461 HPN-206ENST00000597419 1212 ntTSL 5 BASIC19.37■□□□□ 0.69
COL3A1P02461 ZNFX1-AS1_1.1-201ENST00000615787 198 ntBASIC19.37■□□□□ 0.69
COL3A1P02461 ZNF697-201ENST00000421812 5041 ntAPPRIS P1 TSL 3 BASIC19.37■□□□□ 0.69
COL3A1P02461 RGS9-202ENST00000443584 2078 ntTSL 1 (best) BASIC19.37■□□□□ 0.69
COL3A1P02461 MACROD2-201ENST00000217246 4994 ntAPPRIS P1 TSL 2 BASIC19.37■□□□□ 0.69
COL3A1P02461 PCDHB8-201ENST00000239444 2740 ntAPPRIS P1 BASIC19.37■□□□□ 0.69
COL3A1P02461 OSBPL5-210ENST00000525498 2733 ntTSL 2 BASIC19.37■□□□□ 0.69
COL3A1P02461 BBS5-201ENST00000295240 3475 ntAPPRIS P1 TSL 1 (best) BASIC19.37■□□□□ 0.69
COL3A1P02461 BSDC1-205ENST00000446293 1505 ntTSL 2 BASIC19.37■□□□□ 0.69
COL3A1P02461 CEP295NL-205ENST00000619342 1866 ntTSL 5 BASIC19.37■□□□□ 0.69
COL3A1P02461 PRKRIP1-201ENST00000397912 2159 ntAPPRIS P1 TSL 1 (best) BASIC19.37■□□□□ 0.69
COL3A1P02461 MYB-201ENST00000316528 3571 ntTSL 5 BASIC19.37■□□□□ 0.69
COL3A1P02461 IDH3B-212ENST00000613370 1400 ntTSL 1 (best) BASIC19.37■□□□□ 0.69
Retrieved 100 of 98,524 protein–RNA pairs in 40.1 ms