Protein–RNA interactions for Protein: A8TX70

COL6A5, Collagen alpha-5(VI) chain, humanhuman

Predictions only

Length 2,615 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL6A5A8TX70 ZNF331-217ENST00000512387 2130 ntAPPRIS P1 TSL 1 (best) BASIC11.34□□□□□ -0.59
COL6A5A8TX70 CICP11-201ENST00000434745 2827 ntBASIC11.34□□□□□ -0.59
COL6A5A8TX70 C21orf33-202ENST00000348499 1506 ntTSL 1 (best) BASIC11.34□□□□□ -0.59
COL6A5A8TX70 ASAP3-212ENST00000618240 2226 ntTSL 5 BASIC11.34□□□□□ -0.59
COL6A5A8TX70 CAPN3-207ENST00000397200 1643 ntTSL 1 (best) BASIC11.34□□□□□ -0.59
COL6A5A8TX70 MSI2-204ENST00000442934 1624 ntTSL 2 BASIC11.34□□□□□ -0.59
COL6A5A8TX70 DDX19B-204ENST00000451014 1608 ntTSL 2 BASIC11.34□□□□□ -0.59
COL6A5A8TX70 THAP4-203ENST00000402545 833 ntTSL 5 BASIC11.34□□□□□ -0.59
COL6A5A8TX70 KRT18P37-201ENST00000520711 1282 ntBASIC11.34□□□□□ -0.59
COL6A5A8TX70 ACY3-202ENST00000529256 933 ntTSL 3 BASIC11.34□□□□□ -0.59
COL6A5A8TX70 AC011921.1-201ENST00000559739 557 ntTSL 4 BASIC11.34□□□□□ -0.59
COL6A5A8TX70 AC009119.3-202ENST00000566773 196 ntTSL 3 BASIC11.34□□□□□ -0.59
COL6A5A8TX70 AC005786.2-201ENST00000592368 369 ntTSL 3 BASIC11.34□□□□□ -0.59
COL6A5A8TX70 BCAS4-206ENST00000609336 787 ntAPPRIS ALT2 TSL 1 (best) BASIC11.34□□□□□ -0.59
COL6A5A8TX70 C18orf21-207ENST00000610527 1059 ntTSL 2 BASIC11.34□□□□□ -0.59
COL6A5A8TX70 SHISA7-201ENST00000376325 6033 ntAPPRIS P2 TSL 2 BASIC11.34□□□□□ -0.59
COL6A5A8TX70 RPAIN-202ENST00000381208 1394 ntTSL 1 (best) BASIC11.34□□□□□ -0.59
COL6A5A8TX70 BMP1-201ENST00000306349 2626 ntTSL 1 (best) BASIC11.34□□□□□ -0.59
COL6A5A8TX70 AFAP1L2-202ENST00000369271 3964 ntAPPRIS ALT2 TSL 1 (best) BASIC11.34□□□□□ -0.59
COL6A5A8TX70 LILRA2-203ENST00000391737 1452 ntAPPRIS ALT2 TSL 1 (best) BASIC11.34□□□□□ -0.59
COL6A5A8TX70 PRDM5-201ENST00000264808 5330 ntAPPRIS P1 TSL 1 (best) BASIC11.34□□□□□ -0.59
COL6A5A8TX70 GXYLT1-202ENST00000398675 7497 ntAPPRIS P4 TSL 1 (best) BASIC11.34□□□□□ -0.59
COL6A5A8TX70 MPL-201ENST00000372470 1908 ntAPPRIS P2 TSL 1 (best) BASIC11.34□□□□□ -0.59
COL6A5A8TX70 HOOK1-201ENST00000371208 5857 ntAPPRIS P1 TSL 1 (best) BASIC11.34□□□□□ -0.59
COL6A5A8TX70 PRRT2-202ENST00000358758 2567 ntAPPRIS P1 TSL 1 (best) BASIC11.34□□□□□ -0.59
COL6A5A8TX70 ARMC8-213ENST00000470821 1656 ntTSL 5 BASIC11.34□□□□□ -0.59
COL6A5A8TX70 EIF4A1-201ENST00000293831 1756 ntAPPRIS P1 TSL 1 (best) BASIC11.34□□□□□ -0.59
COL6A5A8TX70 P2RX5-207ENST00000551178 1863 ntTSL 1 (best) BASIC11.34□□□□□ -0.59
COL6A5A8TX70 ISLR2-201ENST00000361742 4817 ntAPPRIS P1 TSL 1 (best) BASIC11.34□□□□□ -0.59
COL6A5A8TX70 SELENOS-201ENST00000398226 1439 ntAPPRIS P1 TSL 1 (best) BASIC11.34□□□□□ -0.59
COL6A5A8TX70 CNMD-203ENST00000448904 1444 ntAPPRIS ALT1 TSL 1 (best) BASIC11.34□□□□□ -0.59
COL6A5A8TX70 ATP2C1-224ENST00000533801 3690 ntTSL 1 (best) BASIC11.34□□□□□ -0.59
COL6A5A8TX70 MLXIP-201ENST00000319080 8427 ntAPPRIS P1 TSL 1 (best) BASIC11.34□□□□□ -0.59
COL6A5A8TX70 ZSWIM5-201ENST00000359600 5819 ntAPPRIS P1 TSL 1 (best) BASIC11.34□□□□□ -0.59
COL6A5A8TX70 CACNA1A-214ENST00000614285 8410 ntAPPRIS ALT2 TSL 5 BASIC11.34□□□□□ -0.59
COL6A5A8TX70 BLVRA-201ENST00000265523 1071 ntAPPRIS P1 TSL 1 (best) BASIC11.34□□□□□ -0.59
COL6A5A8TX70 ECHDC2-201ENST00000358358 1126 ntTSL 2 BASIC11.34□□□□□ -0.59
COL6A5A8TX70 ID2-AS1-201ENST00000412712 953 ntTSL 5 BASIC11.34□□□□□ -0.59
COL6A5A8TX70 OR8T1P-201ENST00000421347 918 ntBASIC11.34□□□□□ -0.59
COL6A5A8TX70 NRADDP-201ENST00000437305 691 ntBASIC11.34□□□□□ -0.59
COL6A5A8TX70 TRBC2-201ENST00000466254 758 ntAPPRIS P1 BASIC11.34□□□□□ -0.59
COL6A5A8TX70 AC004889.1-201ENST00000498693 856 ntTSL 5 BASIC11.34□□□□□ -0.59
COL6A5A8TX70 LINC01490-202ENST00000551399 1260 ntTSL 1 (best) BASIC11.34□□□□□ -0.59
COL6A5A8TX70 HNRNPA1P5-201ENST00000558213 966 ntBASIC11.34□□□□□ -0.59
COL6A5A8TX70 AP001462.1-201ENST00000594089 452 ntBASIC11.34□□□□□ -0.59
COL6A5A8TX70 AC254629.1-202ENST00000618276 2112 ntTSL 2 BASIC11.34□□□□□ -0.59
COL6A5A8TX70 CCDC32-215ENST00000625629 801 ntTSL 5 BASIC11.34□□□□□ -0.59
COL6A5A8TX70 HLA-DMB-258ENST00000418107 1397 ntAPPRIS P1 BASIC11.34□□□□□ -0.59
COL6A5A8TX70 TSPAN5-201ENST00000305798 3365 ntAPPRIS P1 TSL 1 (best) BASIC11.34□□□□□ -0.59
COL6A5A8TX70 FAM189A2-201ENST00000257515 2423 ntAPPRIS P1 TSL 1 (best) BASIC11.34□□□□□ -0.59
COL6A5A8TX70 CCDC120-202ENST00000496529 2415 ntAPPRIS P3 TSL 2 BASIC11.34□□□□□ -0.59
COL6A5A8TX70 LONRF1-201ENST00000398246 3594 ntAPPRIS P1 TSL 5 BASIC11.34□□□□□ -0.59
COL6A5A8TX70 COL26A1-201ENST00000313669 3033 ntAPPRIS P2 TSL 1 (best) BASIC11.34□□□□□ -0.59
COL6A5A8TX70 FGF2-201ENST00000264498 6775 ntTSL 1 (best) BASIC11.34□□□□□ -0.59
COL6A5A8TX70 SP100-204ENST00000409341 1898 ntTSL 1 (best) BASIC11.34□□□□□ -0.59
COL6A5A8TX70 AADAT-201ENST00000337664 2261 ntAPPRIS P3 TSL 1 (best) BASIC11.34□□□□□ -0.59
COL6A5A8TX70 HEY1-201ENST00000337919 2296 ntAPPRIS ALT1 TSL 1 (best) BASIC11.34□□□□□ -0.59
COL6A5A8TX70 APLP1-202ENST00000537454 2266 ntTSL 2 BASIC11.34□□□□□ -0.59
COL6A5A8TX70 KPNA2-202ENST00000537025 2456 ntAPPRIS P1 TSL 1 (best) BASIC11.33□□□□□ -0.59
COL6A5A8TX70 PTPRN2-205ENST00000409483 4711 ntAPPRIS ALT2 TSL 2 BASIC11.33□□□□□ -0.59
COL6A5A8TX70 GNA13-201ENST00000439174 4922 ntAPPRIS P1 TSL 1 (best) BASIC11.33□□□□□ -0.59
COL6A5A8TX70 TCF4-201ENST00000354452 3482 ntAPPRIS ALT1 TSL 5 BASIC11.33□□□□□ -0.6
COL6A5A8TX70 TMEM9-202ENST00000367332 1544 ntAPPRIS ALT1 TSL 2 BASIC11.33□□□□□ -0.6
COL6A5A8TX70 ICAM3-201ENST00000160262 1934 ntAPPRIS P1 TSL 1 (best) BASIC11.33□□□□□ -0.6
COL6A5A8TX70 CACNA1B-205ENST00000371363 9758 ntAPPRIS ALT2 TSL 5 BASIC11.33□□□□□ -0.6
COL6A5A8TX70 PPM1J-202ENST00000464951 2474 ntTSL 1 (best) BASIC11.33□□□□□ -0.6
COL6A5A8TX70 DDOST-206ENST00000602624 1963 ntAPPRIS P1 TSL 1 (best) BASIC11.33□□□□□ -0.6
COL6A5A8TX70 CHAD-203ENST00000508540 1789 ntAPPRIS P1 TSL 1 (best) BASIC11.33□□□□□ -0.6
COL6A5A8TX70 FAM86FP-201ENST00000338711 969 ntBASIC11.33□□□□□ -0.6
COL6A5A8TX70 SKA1-202ENST00000398452 979 ntAPPRIS P1 TSL 1 (best) BASIC11.33□□□□□ -0.6
COL6A5A8TX70 SPTLC1P3-201ENST00000403408 259 ntBASIC11.33□□□□□ -0.6
COL6A5A8TX70 PPP1R2P4-201ENST00000424051 595 ntBASIC11.33□□□□□ -0.6
COL6A5A8TX70 RNF181-203ENST00000441634 844 ntAPPRIS ALT1 TSL 2 BASIC11.33□□□□□ -0.6
COL6A5A8TX70 RN7SL33P-201ENST00000462543 342 ntBASIC11.33□□□□□ -0.6
COL6A5A8TX70 PTPN20-229ENST00000513756 640 ntTSL 1 (best) BASIC11.33□□□□□ -0.6
COL6A5A8TX70 SLC29A1-206ENST00000371755 2112 ntAPPRIS P1 TSL 1 (best) BASIC11.33□□□□□ -0.6
COL6A5A8TX70 EFHC1-227ENST00000637089 2133 ntTSL 5 BASIC11.33□□□□□ -0.6
COL6A5A8TX70 AC096667.1-201ENST00000640078 3465 ntTSL 5 BASIC11.33□□□□□ -0.6
COL6A5A8TX70 ASB6-203ENST00000450050 4535 ntTSL 1 (best) BASIC11.33□□□□□ -0.6
COL6A5A8TX70 SLC34A1-204ENST00000512593 1912 ntTSL 2 BASIC11.33□□□□□ -0.6
COL6A5A8TX70 DLEU2-201ENST00000235290 1739 ntTSL 5 BASIC11.33□□□□□ -0.6
COL6A5A8TX70 FGR-202ENST00000374004 2350 ntAPPRIS P1 TSL 1 (best) BASIC11.33□□□□□ -0.6
COL6A5A8TX70 CMKLR1-204ENST00000550402 1893 ntAPPRIS ALT2 TSL 1 (best) BASIC11.33□□□□□ -0.6
COL6A5A8TX70 C21orf33-201ENST00000291577 1674 ntAPPRIS P1 TSL 1 (best) BASIC11.33□□□□□ -0.6
COL6A5A8TX70 CRYL1-201ENST00000298248 1485 ntAPPRIS P1 TSL 1 (best) BASIC11.33□□□□□ -0.6
COL6A5A8TX70 ZBTB10-203ENST00000430430 10132 ntAPPRIS P3 TSL 5 BASIC11.33□□□□□ -0.6
COL6A5A8TX70 ZNF22-201ENST00000298299 2551 ntAPPRIS P1 TSL 1 (best) BASIC11.33□□□□□ -0.6
COL6A5A8TX70 REPS1-221ENST00000626459 3665 ntTSL 5 BASIC11.33□□□□□ -0.6
COL6A5A8TX70 AL136172.1-201ENST00000598590 1394 ntBASIC11.33□□□□□ -0.6
COL6A5A8TX70 NCR1-204ENST00000357397 594 ntTSL 1 (best) BASIC11.33□□□□□ -0.6
COL6A5A8TX70 HYKK-201ENST00000388988 1235 ntAPPRIS P1 TSL 5 BASIC11.33□□□□□ -0.6
COL6A5A8TX70 CD3G-202ENST00000392883 1179 ntTSL 5 BASIC11.33□□□□□ -0.6
COL6A5A8TX70 TEX33-203ENST00000405091 1149 ntAPPRIS ALT2 TSL 5 BASIC11.33□□□□□ -0.6
COL6A5A8TX70 AL132657.1-201ENST00000432530 712 ntTSL 3 BASIC11.33□□□□□ -0.6
COL6A5A8TX70 AC103563.2-201ENST00000442200 597 ntTSL 5 BASIC11.33□□□□□ -0.6
COL6A5A8TX70 AL035414.1-201ENST00000451327 857 ntBASIC11.33□□□□□ -0.6
COL6A5A8TX70 LINC01563-201ENST00000456235 750 ntTSL 2 BASIC11.33□□□□□ -0.6
COL6A5A8TX70 RN7SL340P-201ENST00000470792 296 ntBASIC11.33□□□□□ -0.6
COL6A5A8TX70 LINC02507-201ENST00000509370 1028 ntTSL 3 BASIC11.33□□□□□ -0.6
COL6A5A8TX70 AC009055.1-201ENST00000562656 781 ntTSL 3 BASIC11.33□□□□□ -0.6
Retrieved 100 of 98,524 protein–RNA pairs in 57.7 ms