Protein–RNA interactions for Protein: Q9HD42

CHMP1A, Charged multivesicular body protein 1a, humanhuman

Predicted RBP Predictions only

Length 196 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CHMP1AQ9HD42 LMBRD2-201ENST00000296603 8185 ntAPPRIS P1 TSL 1 (best) BASIC13.05□□□□□ -0.32
CHMP1AQ9HD42 BPGM-201ENST00000344924 1753 ntAPPRIS P1 TSL 1 (best) BASIC13.05□□□□□ -0.32
CHMP1AQ9HD42 MADD-203ENST00000349238 5873 ntAPPRIS ALT2 TSL 1 (best) BASIC13.05□□□□□ -0.32
CHMP1AQ9HD42 KDELR2-201ENST00000258739 2884 ntAPPRIS P1 TSL 1 (best) BASIC13.05□□□□□ -0.32
CHMP1AQ9HD42 IDH3G-204ENST00000427365 1526 ntTSL 5 BASIC13.05□□□□□ -0.32
CHMP1AQ9HD42 HK2-201ENST00000290573 5772 ntAPPRIS P1 TSL 1 (best) BASIC13.05□□□□□ -0.32
CHMP1AQ9HD42 MUC1-204ENST00000343256 648 ntTSL 1 (best) BASIC13.05□□□□□ -0.32
CHMP1AQ9HD42 AL022342.1-201ENST00000400363 863 ntBASIC13.05□□□□□ -0.32
CHMP1AQ9HD42 AL627223.1-201ENST00000416693 442 ntBASIC13.05□□□□□ -0.32
CHMP1AQ9HD42 AC108047.1-201ENST00000457407 404 ntTSL 2 BASIC13.05□□□□□ -0.32
CHMP1AQ9HD42 BANF1P1-201ENST00000553684 263 ntBASIC13.05□□□□□ -0.32
CHMP1AQ9HD42 PRR29-209ENST00000582540 967 ntTSL 2 BASIC13.05□□□□□ -0.32
CHMP1AQ9HD42 TEX264-216ENST00000614067 1174 ntAPPRIS ALT2 TSL 3 BASIC13.05□□□□□ -0.32
CHMP1AQ9HD42 HPSE2-205ENST00000614306 447 ntTSL 5 BASIC13.05□□□□□ -0.32
CHMP1AQ9HD42 MIR6069-201ENST00000620069 79 ntBASIC13.05□□□□□ -0.32
CHMP1AQ9HD42 PTENP1-AS-201ENST00000627688 873 ntTSL 5 BASIC13.05□□□□□ -0.32
CHMP1AQ9HD42 DPEP1-201ENST00000261615 1592 ntAPPRIS P1 TSL 1 (best) BASIC13.05□□□□□ -0.32
CHMP1AQ9HD42 HMGA1-204ENST00000401473 1887 ntAPPRIS ALT1 TSL 1 (best) BASIC13.05□□□□□ -0.32
CHMP1AQ9HD42 RNF145-202ENST00000424310 3613 ntAPPRIS P1 TSL 1 (best) BASIC13.05□□□□□ -0.32
CHMP1AQ9HD42 KCNJ18-201ENST00000567955 2196 ntAPPRIS P1 TSL 1 (best) BASIC13.05□□□□□ -0.32
CHMP1AQ9HD42 NOC2L-201ENST00000327044 2790 ntAPPRIS P1 TSL 1 (best) BASIC13.05□□□□□ -0.32
CHMP1AQ9HD42 MEGF11-201ENST00000288745 5707 ntTSL 1 (best) BASIC13.05□□□□□ -0.32
CHMP1AQ9HD42 ROBO1-201ENST00000436010 7501 ntTSL 5 BASIC13.05□□□□□ -0.32
CHMP1AQ9HD42 KYAT1-202ENST00000320665 1623 ntTSL 2 BASIC13.05□□□□□ -0.32
CHMP1AQ9HD42 TRIM62-204ENST00000543586 1638 ntTSL 2 BASIC13.05□□□□□ -0.32
CHMP1AQ9HD42 ZNF384-202ENST00000355772 2514 ntTSL 1 (best) BASIC13.05□□□□□ -0.32
CHMP1AQ9HD42 PHLDB1-201ENST00000356063 5240 ntAPPRIS ALT2 TSL 2 BASIC13.05□□□□□ -0.32
CHMP1AQ9HD42 PRODH2-201ENST00000301175 1677 ntAPPRIS P1 TSL 1 (best) BASIC13.05□□□□□ -0.32
CHMP1AQ9HD42 SPOCK3-218ENST00000511531 2908 ntAPPRIS ALT2 TSL 5 BASIC13.05□□□□□ -0.32
CHMP1AQ9HD42 ANO10-213ENST00000451430 2019 ntTSL 2 BASIC13.05□□□□□ -0.32
CHMP1AQ9HD42 ATP2A3-202ENST00000352011 3274 ntTSL 5 BASIC13.05□□□□□ -0.32
CHMP1AQ9HD42 ZCCHC17-202ENST00000373714 1730 ntAPPRIS P1 TSL 1 (best) BASIC13.05□□□□□ -0.32
CHMP1AQ9HD42 CAMK2D-204ENST00000394522 2696 ntAPPRIS ALT1 TSL 1 (best) BASIC13.05□□□□□ -0.32
CHMP1AQ9HD42 WSCD1-202ENST00000539421 2665 ntAPPRIS P1 TSL 5 BASIC13.05□□□□□ -0.32
CHMP1AQ9HD42 AC148477.2-201ENST00000537762 3039 ntTSL 3 BASIC13.05□□□□□ -0.32
CHMP1AQ9HD42 REXO1L2P-201ENST00000425429 2069 ntBASIC13.04□□□□□ -0.32
CHMP1AQ9HD42 P4HA1-205ENST00000440381 2790 ntTSL 3 BASIC13.04□□□□□ -0.32
CHMP1AQ9HD42 MAX-219ENST00000618858 2141 ntTSL 1 (best) BASIC13.04□□□□□ -0.32
CHMP1AQ9HD42 AL031728.1-201ENST00000449034 2479 ntTSL 3 BASIC13.04□□□□□ -0.32
CHMP1AQ9HD42 RNF183-201ENST00000297894 1830 ntAPPRIS P1 TSL 2 BASIC13.04□□□□□ -0.32
CHMP1AQ9HD42 TMPRSS6-201ENST00000346753 3197 ntAPPRIS P3 TSL 1 (best) BASIC13.04□□□□□ -0.32
CHMP1AQ9HD42 YME1L1-202ENST00000375972 2517 ntTSL 1 (best) BASIC13.04□□□□□ -0.32
CHMP1AQ9HD42 CRH-201ENST00000276571 1543 ntAPPRIS P1 TSL 1 (best) BASIC13.04□□□□□ -0.32
CHMP1AQ9HD42 MPI-203ENST00000535694 1523 ntTSL 2 BASIC13.04□□□□□ -0.32
CHMP1AQ9HD42 PROKR1-201ENST00000303786 4273 ntAPPRIS P1 TSL 5 BASIC13.04□□□□□ -0.32
CHMP1AQ9HD42 RAI2-204ENST00000451717 2224 ntAPPRIS P1 TSL 1 (best) BASIC13.04□□□□□ -0.32
CHMP1AQ9HD42 ALDH7A1-201ENST00000409134 4964 ntAPPRIS P2 TSL 1 (best) BASIC13.04□□□□□ -0.32
CHMP1AQ9HD42 PIDD1-201ENST00000347755 2998 ntAPPRIS P1 TSL 1 (best) BASIC13.04□□□□□ -0.32
CHMP1AQ9HD42 SPECC1-202ENST00000395522 2982 ntTSL 1 (best) BASIC13.04□□□□□ -0.32
CHMP1AQ9HD42 MBLAC2-202ENST00000514906 1936 ntBASIC13.04□□□□□ -0.32
CHMP1AQ9HD42 CACNB4-210ENST00000539935 8378 ntTSL 1 (best) BASIC13.04□□□□□ -0.32
CHMP1AQ9HD42 UBE2D1-201ENST00000373910 2659 ntAPPRIS P1 TSL 1 (best) BASIC13.04□□□□□ -0.32
CHMP1AQ9HD42 CFLAR-205ENST00000342795 1613 ntTSL 5 BASIC13.04□□□□□ -0.32
CHMP1AQ9HD42 AC068946.1-202ENST00000318673 2745 ntAPPRIS P1 TSL 2 BASIC13.04□□□□□ -0.32
CHMP1AQ9HD42 TAAR5-201ENST00000258034 1014 ntAPPRIS P1 BASIC13.04□□□□□ -0.32
CHMP1AQ9HD42 KLK8-202ENST00000320838 456 ntTSL 5 BASIC13.04□□□□□ -0.32
CHMP1AQ9HD42 TBC1D7-202ENST00000356436 1116 ntAPPRIS P1 TSL 1 (best) BASIC13.04□□□□□ -0.32
CHMP1AQ9HD42 GSTO1-201ENST00000369710 900 ntTSL 2 BASIC13.04□□□□□ -0.32
CHMP1AQ9HD42 TBC1D7-204ENST00000379300 1276 ntAPPRIS P1 TSL 1 (best) BASIC13.04□□□□□ -0.32
CHMP1AQ9HD42 MIR574-201ENST00000385209 96 ntBASIC13.04□□□□□ -0.32
CHMP1AQ9HD42 FABP5-202ENST00000396359 986 ntTSL 5 BASIC13.04□□□□□ -0.32
CHMP1AQ9HD42 LINC00404-201ENST00000418660 428 ntTSL 2 BASIC13.04□□□□□ -0.32
CHMP1AQ9HD42 FAM58DP-201ENST00000428076 619 ntBASIC13.04□□□□□ -0.32
CHMP1AQ9HD42 AL133481.1-201ENST00000438554 511 ntTSL 5 BASIC13.04□□□□□ -0.32
CHMP1AQ9HD42 AL109811.2-201ENST00000447600 487 ntTSL 3 BASIC13.04□□□□□ -0.32
CHMP1AQ9HD42 LINC01143-201ENST00000449073 625 ntTSL 2 BASIC13.04□□□□□ -0.32
CHMP1AQ9HD42 AL022341.1-201ENST00000455294 389 ntTSL 2 BASIC13.04□□□□□ -0.32
CHMP1AQ9HD42 CD28-203ENST00000458610 705 ntTSL 1 (best) BASIC13.04□□□□□ -0.32
CHMP1AQ9HD42 SERBP1P3-201ENST00000459980 809 ntBASIC13.04□□□□□ -0.32
CHMP1AQ9HD42 EHMT1-216ENST00000493484 1182 ntTSL 3 BASIC13.04□□□□□ -0.32
CHMP1AQ9HD42 SLED1-202ENST00000512051 380 ntBASIC13.04□□□□□ -0.32
CHMP1AQ9HD42 RCHY1-208ENST00000512706 1011 ntTSL 3 BASIC13.04□□□□□ -0.32
CHMP1AQ9HD42 LINC01184-209ENST00000514573 609 ntTSL 3 BASIC13.04□□□□□ -0.32
CHMP1AQ9HD42 PGAM5P1-201ENST00000518923 814 ntBASIC13.04□□□□□ -0.32
CHMP1AQ9HD42 GATD1-206ENST00000526325 756 ntTSL 5 BASIC13.04□□□□□ -0.32
CHMP1AQ9HD42 AC007967.4-201ENST00000614700 386 ntBASIC13.04□□□□□ -0.32
CHMP1AQ9HD42 COX6B2-201ENST00000326529 1663 ntAPPRIS P1 TSL 1 (best) BASIC13.04□□□□□ -0.32
CHMP1AQ9HD42 GFAP-214ENST00000588735 6538 ntAPPRIS P1 TSL 1 (best) BASIC13.04□□□□□ -0.32
CHMP1AQ9HD42 SEMA3F-202ENST00000413852 3212 ntTSL 1 (best) BASIC13.04□□□□□ -0.32
CHMP1AQ9HD42 SEZ6L-202ENST00000343706 2898 ntTSL 1 (best) BASIC13.04□□□□□ -0.32
CHMP1AQ9HD42 OTP-201ENST00000306422 3669 ntAPPRIS P1 TSL 1 (best) BASIC13.04□□□□□ -0.32
CHMP1AQ9HD42 PTBP1-221ENST00000635647 3691 ntTSL 5 BASIC13.04□□□□□ -0.32
CHMP1AQ9HD42 CNTNAP1-201ENST00000264638 5276 ntAPPRIS P1 TSL 1 (best) BASIC13.04□□□□□ -0.32
CHMP1AQ9HD42 KRT8P12-202ENST00000472924 1397 ntBASIC13.04□□□□□ -0.32
CHMP1AQ9HD42 HVCN1-202ENST00000356742 2189 ntAPPRIS P1 TSL 1 (best) BASIC13.04□□□□□ -0.32
CHMP1AQ9HD42 NUBPL-201ENST00000281081 3049 ntAPPRIS P1 TSL 1 (best) BASIC13.04□□□□□ -0.32
CHMP1AQ9HD42 PNLDC1-202ENST00000392167 1816 ntAPPRIS P1 TSL 2 BASIC13.04□□□□□ -0.32
CHMP1AQ9HD42 TMEM212-201ENST00000334567 1881 ntAPPRIS P1 TSL 2 BASIC13.04□□□□□ -0.32
CHMP1AQ9HD42 NMNAT3-202ENST00000339837 1863 ntTSL 1 (best) BASIC13.04□□□□□ -0.32
CHMP1AQ9HD42 MON1B-201ENST00000248248 6091 ntAPPRIS P1 TSL 1 (best) BASIC13.04□□□□□ -0.32
CHMP1AQ9HD42 KIAA0895L-201ENST00000290881 3550 ntAPPRIS P1 TSL 5 BASIC13.04□□□□□ -0.32
CHMP1AQ9HD42 SHROOM1-203ENST00000378679 4019 ntAPPRIS ALT2 TSL 1 (best) BASIC13.04□□□□□ -0.32
CHMP1AQ9HD42 AC016582.3-202ENST00000443870 6580 ntTSL 1 (best) BASIC13.04□□□□□ -0.32
CHMP1AQ9HD42 AC079447.1-201ENST00000424491 1947 ntAPPRIS P1 TSL 2 BASIC13.03□□□□□ -0.32
CHMP1AQ9HD42 ATE1-201ENST00000224652 4930 ntAPPRIS P5 TSL 1 (best) BASIC13.03□□□□□ -0.32
CHMP1AQ9HD42 MAGIX-208ENST00000616266 3295 ntAPPRIS ALT2 TSL 5 BASIC13.03□□□□□ -0.32
CHMP1AQ9HD42 FRMD4B-201ENST00000398540 5060 ntAPPRIS P1 TSL 1 (best) BASIC13.03□□□□□ -0.32
CHMP1AQ9HD42 SLC26A11-202ENST00000411502 2872 ntAPPRIS P1 TSL 2 BASIC13.03□□□□□ -0.32
CHMP1AQ9HD42 CDH20-202ENST00000536675 2855 ntAPPRIS P1 TSL 1 (best) BASIC13.03□□□□□ -0.32
CHMP1AQ9HD42 MYO7A-202ENST00000409709 7462 ntTSL 1 (best) BASIC13.03□□□□□ -0.32
Retrieved 100 of 98,524 protein–RNA pairs in 51.2 ms