Protein–RNA interactions for Protein: Q96AY4

TTC28, Tetratricopeptide repeat protein 28, humanhuman

Predictions only

Length 2,481 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TTC28Q96AY4 AC007952.5-201ENST00000572818 1486 ntBASIC14.78□□□□□ -0.04
TTC28Q96AY4 C1orf43-202ENST00000362076 1551 ntTSL 1 (best) BASIC14.78□□□□□ -0.04
TTC28Q96AY4 TRMT6-201ENST00000203001 2327 ntAPPRIS P1 TSL 1 (best) BASIC14.78□□□□□ -0.04
TTC28Q96AY4 PABPC1L-201ENST00000217073 1851 ntAPPRIS P1 TSL 5 BASIC14.78□□□□□ -0.04
TTC28Q96AY4 NDRG2-207ENST00000397847 2084 ntTSL 1 (best) BASIC14.78□□□□□ -0.04
TTC28Q96AY4 CYP46A1-201ENST00000261835 2181 ntAPPRIS P1 TSL 1 (best) BASIC14.78□□□□□ -0.04
TTC28Q96AY4 ASAH1-223ENST00000636171 2283 ntTSL 5 BASIC14.78□□□□□ -0.04
TTC28Q96AY4 PTPRA-205ENST00000399903 3337 ntTSL 5 BASIC14.78□□□□□ -0.04
TTC28Q96AY4 SEC14L4-204ENST00000381982 1603 ntTSL 1 (best) BASIC14.78□□□□□ -0.04
TTC28Q96AY4 FAM156B-202ENST00000509613 1701 ntAPPRIS P2 TSL 2 BASIC14.78□□□□□ -0.04
TTC28Q96AY4 TTC34-201ENST00000401095 8814 ntAPPRIS ALT2 TSL 5 BASIC14.78□□□□□ -0.04
TTC28Q96AY4 LRFN3-201ENST00000246529 2513 ntAPPRIS P1 TSL 1 (best) BASIC14.78□□□□□ -0.04
TTC28Q96AY4 C6orf203-201ENST00000311381 900 ntAPPRIS P1 TSL 1 (best) BASIC14.78□□□□□ -0.04
TTC28Q96AY4 AC000077.1-201ENST00000420012 953 ntBASIC14.78□□□□□ -0.04
TTC28Q96AY4 AC009517.1-201ENST00000454750 570 ntBASIC14.78□□□□□ -0.04
TTC28Q96AY4 CDHR4-205ENST00000487256 1017 ntTSL 5 BASIC14.78□□□□□ -0.04
TTC28Q96AY4 AC025171.3-201ENST00000509036 472 ntTSL 2 BASIC14.78□□□□□ -0.04
TTC28Q96AY4 PPY-202ENST00000587006 431 ntTSL 3 BASIC14.78□□□□□ -0.04
TTC28Q96AY4 RPL18A-203ENST00000599870 1084 ntTSL 2 BASIC14.78□□□□□ -0.04
TTC28Q96AY4 RPL18A-204ENST00000599898 491 ntTSL 2 BASIC14.78□□□□□ -0.04
TTC28Q96AY4 LINC00969-294ENST00000627609 992 ntTSL 5 BASIC14.78□□□□□ -0.04
TTC28Q96AY4 AL807742.1-201ENST00000636678 1160 ntTSL 5 BASIC14.78□□□□□ -0.04
TTC28Q96AY4 PRL-201ENST00000306482 1354 ntAPPRIS P1 TSL 1 (best) BASIC14.78□□□□□ -0.04
TTC28Q96AY4 MAST2-201ENST00000361297 5738 ntAPPRIS P1 TSL 1 (best) BASIC14.78□□□□□ -0.04
TTC28Q96AY4 PCDHB19P-201ENST00000570871 2371 ntBASIC14.78□□□□□ -0.04
TTC28Q96AY4 TMEM206-201ENST00000261455 2475 ntAPPRIS P1 TSL 1 (best) BASIC14.78□□□□□ -0.04
TTC28Q96AY4 GTPBP2-202ENST00000307126 2933 ntAPPRIS P1 TSL 1 (best) BASIC14.78□□□□□ -0.04
TTC28Q96AY4 TDRKH-203ENST00000368824 2824 ntAPPRIS P2 TSL 1 (best) BASIC14.78□□□□□ -0.04
TTC28Q96AY4 CPXM2-204ENST00000615851 2512 ntTSL 5 BASIC14.78□□□□□ -0.04
TTC28Q96AY4 LETMD1-201ENST00000262055 2112 ntAPPRIS P1 TSL 1 (best) BASIC14.78□□□□□ -0.04
TTC28Q96AY4 LETMD1-203ENST00000418425 2123 ntTSL 2 BASIC14.78□□□□□ -0.04
TTC28Q96AY4 AL031658.1-201ENST00000449519 2013 ntTSL 2 BASIC14.78□□□□□ -0.04
TTC28Q96AY4 AMIGO1-202ENST00000369864 5088 ntAPPRIS P1 TSL 1 (best) BASIC14.78□□□□□ -0.04
TTC28Q96AY4 COLEC11-203ENST00000382062 1633 ntTSL 1 (best) BASIC14.78□□□□□ -0.04
TTC28Q96AY4 TBC1D3P2-201ENST00000339120 1513 ntTSL 2 BASIC14.78□□□□□ -0.04
TTC28Q96AY4 SOGA3-203ENST00000525778 4077 ntAPPRIS P1 TSL 5 BASIC14.78□□□□□ -0.04
TTC28Q96AY4 BIN3-202ENST00000399977 1340 ntTSL 2 BASIC14.78□□□□□ -0.04
TTC28Q96AY4 PGRMC2-207ENST00000520121 3785 ntTSL 1 (best) BASIC14.78□□□□□ -0.04
TTC28Q96AY4 ARHGAP23-221ENST00000620417 3663 ntAPPRIS ALT2 TSL 5 BASIC14.78□□□□□ -0.04
TTC28Q96AY4 PPIF-201ENST00000225174 2190 ntAPPRIS P1 TSL 1 (best) BASIC14.78□□□□□ -0.04
TTC28Q96AY4 FBXL19-204ENST00000471231 3641 ntTSL 2 BASIC14.78□□□□□ -0.04
TTC28Q96AY4 BET1L-203ENST00000382762 2819 ntAPPRIS P1 TSL 1 (best) BASIC14.78□□□□□ -0.04
TTC28Q96AY4 DTX2-206ENST00000430490 2623 ntAPPRIS P3 TSL 1 (best) BASIC14.78□□□□□ -0.04
TTC28Q96AY4 SPC25-201ENST00000282074 1354 ntAPPRIS P1 TSL 1 (best) BASIC14.77□□□□□ -0.04
TTC28Q96AY4 BPIFB6-201ENST00000349552 1362 ntAPPRIS P1 TSL 1 (best) BASIC14.77□□□□□ -0.04
TTC28Q96AY4 TNFRSF13C-201ENST00000291232 3944 ntAPPRIS P1 TSL 1 (best) BASIC14.77□□□□□ -0.04
TTC28Q96AY4 PODXL-202ENST00000378555 2105 ntAPPRIS P3 TSL 1 (best) BASIC14.77□□□□□ -0.04
TTC28Q96AY4 R3HDM2P2-201ENST00000401880 2116 ntBASIC14.77□□□□□ -0.04
TTC28Q96AY4 FRGCA-201ENST00000424933 422 ntTSL 3 BASIC14.77□□□□□ -0.04
TTC28Q96AY4 AC011284.1-201ENST00000427920 856 ntTSL 4 BASIC14.77□□□□□ -0.04
TTC28Q96AY4 AC114488.1-201ENST00000435872 591 ntTSL 3 BASIC14.77□□□□□ -0.04
TTC28Q96AY4 AC226118.1-201ENST00000515213 2146 ntTSL 2 BASIC14.77□□□□□ -0.04
TTC28Q96AY4 AC008764.4-207ENST00000600705 956 ntTSL 2 BASIC14.77□□□□□ -0.04
TTC28Q96AY4 RAB11FIP2-201ENST00000355624 6061 ntAPPRIS P1 TSL 1 (best) BASIC14.77□□□□□ -0.04
TTC28Q96AY4 AP001273.2-201ENST00000638767 2993 ntAPPRIS P1 TSL 5 BASIC14.77□□□□□ -0.04
TTC28Q96AY4 AC011287.1-201ENST00000639998 1349 ntTSL 5 BASIC14.77□□□□□ -0.04
TTC28Q96AY4 PRKRIP1-208ENST00000496391 3430 ntAPPRIS P1 TSL 2 BASIC14.77□□□□□ -0.04
TTC28Q96AY4 OGG1-203ENST00000302036 2220 ntTSL 1 (best) BASIC14.77□□□□□ -0.04
TTC28Q96AY4 HSPB7-204ENST00000411503 2128 ntAPPRIS ALT1 TSL 1 (best) BASIC14.77□□□□□ -0.04
TTC28Q96AY4 ATRN-201ENST00000262919 8633 ntAPPRIS P4 TSL 5 BASIC14.77□□□□□ -0.04
TTC28Q96AY4 SSC5D-201ENST00000389623 4845 ntAPPRIS P3 TSL 1 (best) BASIC14.77□□□□□ -0.04
TTC28Q96AY4 TTC23L-203ENST00000505624 1353 ntAPPRIS P2 TSL 1 (best) BASIC14.77□□□□□ -0.04
TTC28Q96AY4 GK-204ENST00000378945 2063 ntAPPRIS P3 TSL 1 (best) BASIC14.77□□□□□ -0.05
TTC28Q96AY4 GNB1-209ENST00000610897 3145 ntAPPRIS P1 TSL 5 BASIC14.77□□□□□ -0.05
TTC28Q96AY4 GH1-203ENST00000351388 685 ntTSL 2 BASIC14.77□□□□□ -0.05
TTC28Q96AY4 MIR339-201ENST00000362153 94 ntBASIC14.77□□□□□ -0.05
TTC28Q96AY4 SAA1-202ENST00000405158 675 ntAPPRIS P1 TSL 5 BASIC14.77□□□□□ -0.05
TTC28Q96AY4 U3.41-201ENST00000408711 219 ntBASIC14.77□□□□□ -0.05
TTC28Q96AY4 LINC01656-201ENST00000415702 630 ntTSL 1 (best) BASIC14.77□□□□□ -0.05
TTC28Q96AY4 AL591242.1-201ENST00000422284 343 ntTSL 2 BASIC14.77□□□□□ -0.05
TTC28Q96AY4 AL110503.1-201ENST00000457224 534 ntTSL 3 BASIC14.77□□□□□ -0.05
TTC28Q96AY4 ZNF286A-212ENST00000580259 527 ntTSL 4 BASIC14.77□□□□□ -0.05
TTC28Q96AY4 MIR5193-201ENST00000584510 109 ntBASIC14.77□□□□□ -0.05
TTC28Q96AY4 AC239600.1-201ENST00000603201 462 ntBASIC14.77□□□□□ -0.05
TTC28Q96AY4 CYP1B1-AS1-221ENST00000627172 995 ntTSL 5 BASIC14.77□□□□□ -0.05
TTC28Q96AY4 ADCY1-204ENST00000621543 1647 ntTSL 5 BASIC14.77□□□□□ -0.05
TTC28Q96AY4 ETV5-206ENST00000434744 2213 ntAPPRIS P1 TSL 1 (best) BASIC14.77□□□□□ -0.05
TTC28Q96AY4 NRXN2-205ENST00000409571 6381 ntAPPRIS ALT2 TSL 5 BASIC14.77□□□□□ -0.05
TTC28Q96AY4 CLDND1-222ENST00000510545 2124 ntAPPRIS P1 TSL 5 BASIC14.77□□□□□ -0.05
TTC28Q96AY4 SPAG1-205ENST00000520508 1796 ntTSL 5 BASIC14.77□□□□□ -0.05
TTC28Q96AY4 SQOR-208ENST00000568606 1792 ntAPPRIS P1 TSL 5 BASIC14.77□□□□□ -0.05
TTC28Q96AY4 SHISA2-201ENST00000319420 2860 ntAPPRIS P1 TSL 1 (best) BASIC14.77□□□□□ -0.05
TTC28Q96AY4 AC012370.2-204ENST00000601940 1320 ntTSL 5 BASIC14.77□□□□□ -0.05
TTC28Q96AY4 RTFDC1-203ENST00000395881 1572 ntTSL 2 BASIC14.77□□□□□ -0.05
TTC28Q96AY4 AC003102.2-201ENST00000589195 1469 ntBASIC14.77□□□□□ -0.05
TTC28Q96AY4 AC003986.2-201ENST00000419944 1711 ntTSL 3 BASIC14.77□□□□□ -0.05
TTC28Q96AY4 TMEM183A-201ENST00000367242 3019 ntAPPRIS P1 TSL 1 (best) BASIC14.76□□□□□ -0.05
TTC28Q96AY4 KCNT1-214ENST00000631073 3948 ntAPPRIS ALT2 TSL 5 BASIC14.76□□□□□ -0.05
TTC28Q96AY4 MRPL48-203ENST00000398483 1058 ntTSL 3 BASIC14.76□□□□□ -0.05
TTC28Q96AY4 WWC2-208ENST00000508747 1216 ntTSL 1 (best) BASIC14.76□□□□□ -0.05
TTC28Q96AY4 DDIAS-204ENST00000525388 961 ntAPPRIS ALT2 TSL 2 BASIC14.76□□□□□ -0.05
TTC28Q96AY4 AC004923.1-201ENST00000527543 776 ntTSL 5 BASIC14.76□□□□□ -0.05
TTC28Q96AY4 LINC00244-201ENST00000625073 613 ntBASIC14.76□□□□□ -0.05
TTC28Q96AY4 AC011416.4-201ENST00000639283 2195 ntTSL 5 BASIC14.76□□□□□ -0.05
TTC28Q96AY4 KYAT1-201ENST00000302586 1903 ntAPPRIS P1 TSL 1 (best) BASIC14.76□□□□□ -0.05
TTC28Q96AY4 AP000552.1-203ENST00000416615 1930 ntTSL 5 BASIC14.76□□□□□ -0.05
TTC28Q96AY4 TMPRSS4-214ENST00000523251 1689 ntAPPRIS ALT2 TSL 2 BASIC14.76□□□□□ -0.05
TTC28Q96AY4 LONP1-201ENST00000360614 3236 ntAPPRIS P1 TSL 1 (best) BASIC14.76□□□□□ -0.05
TTC28Q96AY4 POLR3E-202ENST00000359210 2469 ntTSL 1 (best) BASIC14.76□□□□□ -0.05
TTC28Q96AY4 RBCK1-203ENST00000382181 2208 ntTSL 1 (best) BASIC14.76□□□□□ -0.05
Retrieved 100 of 98,524 protein–RNA pairs in 66.2 ms