Protein–RNA interactions for Protein: Q7Z494

NPHP3, Nephrocystin-3, humanhuman

Predictions only

Length 1,330 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
NPHP3Q7Z494 ZNF281-203ENST00000367353 3080 ntAPPRIS P3 TSL 1 (best) BASIC19.96■□□□□ 0.79
NPHP3Q7Z494 KRT8P28-201ENST00000433288 1390 ntBASIC19.96■□□□□ 0.79
NPHP3Q7Z494 KCNJ5-203ENST00000533599 1350 ntAPPRIS P1 TSL 1 (best) BASIC19.96■□□□□ 0.79
NPHP3Q7Z494 SMPDL3B-201ENST00000373888 1548 ntAPPRIS ALT2 TSL 1 (best) BASIC19.96■□□□□ 0.79
NPHP3Q7Z494 OR6D1P-203ENST00000641209 4860 ntBASIC19.96■□□□□ 0.79
NPHP3Q7Z494 NR4A3-202ENST00000338488 2588 ntTSL 1 (best) BASIC19.96■□□□□ 0.79
NPHP3Q7Z494 PRSS16-201ENST00000230582 2716 ntAPPRIS P1 TSL 1 (best) BASIC19.96■□□□□ 0.79
NPHP3Q7Z494 AC073869.2-201ENST00000417338 1026 ntBASIC19.96■□□□□ 0.79
NPHP3Q7Z494 FAM92A-202ENST00000423990 914 ntTSL 5 BASIC19.96■□□□□ 0.79
NPHP3Q7Z494 LINC00866-201ENST00000427379 418 ntTSL 2 BASIC19.96■□□□□ 0.79
NPHP3Q7Z494 AL355803.1-201ENST00000455524 188 ntTSL 2 BASIC19.96■□□□□ 0.79
NPHP3Q7Z494 PRR7-AS1-204ENST00000514846 543 ntTSL 2 BASIC19.96■□□□□ 0.79
NPHP3Q7Z494 ZNF879-202ENST00000519896 543 ntTSL 4 BASIC19.96■□□□□ 0.79
NPHP3Q7Z494 AC104961.2-201ENST00000578129 663 ntTSL 2 BASIC19.96■□□□□ 0.79
NPHP3Q7Z494 AC020934.2-201ENST00000592400 456 ntTSL 3 BASIC19.96■□□□□ 0.79
NPHP3Q7Z494 HNF1A-216ENST00000617366 2473 ntTSL 1 (best) BASIC19.96■□□□□ 0.79
NPHP3Q7Z494 AC091980.2-201ENST00000619056 2775 ntAPPRIS P1 BASIC19.96■□□□□ 0.79
NPHP3Q7Z494 ADGRB2-201ENST00000373655 5400 ntAPPRIS P4 TSL 1 (best) BASIC19.96■□□□□ 0.79
NPHP3Q7Z494 TCF3-212ENST00000588136 2658 ntAPPRIS ALT2 TSL 2 BASIC19.96■□□□□ 0.79
NPHP3Q7Z494 KRT76-201ENST00000332411 2529 ntAPPRIS P1 TSL 1 (best) BASIC19.96■□□□□ 0.79
NPHP3Q7Z494 VAMP2-202ENST00000404970 1479 ntTSL 2 BASIC19.95■□□□□ 0.78
NPHP3Q7Z494 KLHL31-201ENST00000370905 5743 ntAPPRIS P1 TSL 1 (best) BASIC19.95■□□□□ 0.78
NPHP3Q7Z494 RBM4B-201ENST00000310046 1840 ntAPPRIS P1 TSL 1 (best) BASIC19.95■□□□□ 0.78
NPHP3Q7Z494 CHTF18-220ENST00000631357 3555 ntAPPRIS ALT2 TSL 5 BASIC19.95■□□□□ 0.78
NPHP3Q7Z494 RTN1-209ENST00000611068 2647 ntTSL 5 BASIC19.95■□□□□ 0.78
NPHP3Q7Z494 LZTS3-203ENST00000360342 4055 ntTSL 1 (best) BASIC19.95■□□□□ 0.78
NPHP3Q7Z494 DMRTA1-201ENST00000325870 5569 ntAPPRIS P1 TSL 1 (best) BASIC19.95■□□□□ 0.78
NPHP3Q7Z494 PELI3-209ENST00000618547 2508 ntTSL 2 BASIC19.95■□□□□ 0.78
NPHP3Q7Z494 SRF-201ENST00000265354 4202 ntAPPRIS P1 TSL 1 (best) BASIC19.95■□□□□ 0.78
NPHP3Q7Z494 OXA1L-212ENST00000604262 1571 ntAPPRIS P1 TSL 1 (best) BASIC19.95■□□□□ 0.78
NPHP3Q7Z494 RAP1GDS1-203ENST00000380158 2085 ntTSL 1 (best) BASIC19.95■□□□□ 0.78
NPHP3Q7Z494 CELF4-223ENST00000603232 1906 ntAPPRIS ALT1 TSL 1 (best) BASIC19.95■□□□□ 0.78
NPHP3Q7Z494 SGCA-201ENST00000262018 1432 ntAPPRIS P1 TSL 1 (best) BASIC19.95■□□□□ 0.78
NPHP3Q7Z494 AC009093.10-201ENST00000641956 1442 ntBASIC19.95■□□□□ 0.78
NPHP3Q7Z494 PLK2-215ENST00000617412 2792 ntTSL 5 BASIC19.95■□□□□ 0.78
NPHP3Q7Z494 RND2-202ENST00000587250 4147 ntAPPRIS P1 TSL 1 (best) BASIC19.95■□□□□ 0.78
NPHP3Q7Z494 RANBP9-201ENST00000011619 3113 ntAPPRIS P1 TSL 1 (best) BASIC19.95■□□□□ 0.78
NPHP3Q7Z494 G6PD-201ENST00000369620 1799 ntTSL 5 BASIC19.95■□□□□ 0.78
NPHP3Q7Z494 MIR3936HG-204ENST00000621103 1793 ntTSL 1 (best) BASIC19.95■□□□□ 0.78
NPHP3Q7Z494 TMSB15A-201ENST00000289373 685 ntAPPRIS P1 TSL 1 (best) BASIC19.95■□□□□ 0.78
NPHP3Q7Z494 U2AF1L4-201ENST00000292879 729 ntTSL 1 (best) BASIC19.95■□□□□ 0.78
NPHP3Q7Z494 Metazoa_SRP.4-201ENST00000366232 298 ntBASIC19.95■□□□□ 0.78
NPHP3Q7Z494 AL935212.1-201ENST00000377548 906 ntTSL 5 BASIC19.95■□□□□ 0.78
NPHP3Q7Z494 C11orf49-203ENST00000378618 1166 ntTSL 5 BASIC19.95■□□□□ 0.78
NPHP3Q7Z494 MBD3L4-201ENST00000381394 775 ntAPPRIS P1 TSL 1 (best) BASIC19.95■□□□□ 0.78
NPHP3Q7Z494 GYPC-203ENST00000409836 932 ntAPPRIS ALT2 TSL 1 (best) BASIC19.95■□□□□ 0.78
NPHP3Q7Z494 LINC00686-201ENST00000435412 332 ntTSL 3 BASIC19.95■□□□□ 0.78
NPHP3Q7Z494 CSNK1G2P1-201ENST00000442675 955 ntBASIC19.95■□□□□ 0.78
NPHP3Q7Z494 PGAM1P12-201ENST00000505622 748 ntBASIC19.95■□□□□ 0.78
NPHP3Q7Z494 AP003068.3-201ENST00000527789 175 ntTSL 2 BASIC19.95■□□□□ 0.78
NPHP3Q7Z494 AP000845.1-201ENST00000581677 2131 ntBASIC19.95■□□□□ 0.78
NPHP3Q7Z494 AP001029.1-201ENST00000589843 168 ntTSL 3 BASIC19.95■□□□□ 0.78
NPHP3Q7Z494 PEBP1P2-201ENST00000603980 558 ntBASIC19.95■□□□□ 0.78
NPHP3Q7Z494 MCM4-201ENST00000262105 4183 ntAPPRIS P1 TSL 1 (best) BASIC19.95■□□□□ 0.78
NPHP3Q7Z494 NKIRAS1-201ENST00000388759 2335 ntAPPRIS P2 TSL 3 BASIC19.95■□□□□ 0.78
NPHP3Q7Z494 CRYL1-201ENST00000298248 1485 ntAPPRIS P1 TSL 1 (best) BASIC19.95■□□□□ 0.78
NPHP3Q7Z494 SLC22A12-205ENST00000473690 2522 ntTSL 2 BASIC19.95■□□□□ 0.78
NPHP3Q7Z494 MCF2L-208ENST00000397030 6580 ntTSL 2 BASIC19.95■□□□□ 0.78
NPHP3Q7Z494 DAG1-201ENST00000308775 5522 ntAPPRIS P1 TSL 1 (best) BASIC19.95■□□□□ 0.78
NPHP3Q7Z494 MAP3K8-201ENST00000263056 3096 ntAPPRIS P1 TSL 1 (best) BASIC19.95■□□□□ 0.78
NPHP3Q7Z494 TSPAN17-209ENST00000515708 2361 ntAPPRIS P1 TSL 1 (best) BASIC19.95■□□□□ 0.78
NPHP3Q7Z494 SLC43A1-204ENST00000528450 2358 ntAPPRIS P1 TSL 1 (best) BASIC19.95■□□□□ 0.78
NPHP3Q7Z494 MLPH-203ENST00000409373 2031 ntTSL 1 (best) BASIC19.95■□□□□ 0.78
NPHP3Q7Z494 AL513523.2-202ENST00000427283 2040 ntBASIC19.95■□□□□ 0.78
NPHP3Q7Z494 ASB15-207ENST00000540573 1651 ntTSL 2 BASIC19.95■□□□□ 0.78
NPHP3Q7Z494 MYCBPAP-203ENST00000436259 3102 ntAPPRIS ALT2 TSL 5 BASIC19.94■□□□□ 0.78
NPHP3Q7Z494 TRPC4AP-202ENST00000451813 3138 ntTSL 2 BASIC19.94■□□□□ 0.78
NPHP3Q7Z494 API5-208ENST00000531273 1868 ntTSL 2 BASIC19.94■□□□□ 0.78
NPHP3Q7Z494 AC021305.1-201ENST00000520656 1514 ntBASIC19.94■□□□□ 0.78
NPHP3Q7Z494 SH3BP4-202ENST00000392011 5194 ntAPPRIS P1 TSL 1 (best) BASIC19.94■□□□□ 0.78
NPHP3Q7Z494 NAA50-201ENST00000240922 6135 ntAPPRIS P3 TSL 1 (best) BASIC19.94■□□□□ 0.78
NPHP3Q7Z494 FTX-216ENST00000638985 1367 ntTSL 5 BASIC19.94■□□□□ 0.78
NPHP3Q7Z494 AP1M2-207ENST00000590923 1757 ntAPPRIS ALT1 TSL 1 (best) BASIC19.94■□□□□ 0.78
NPHP3Q7Z494 FGD5-201ENST00000285046 5720 ntAPPRIS P1 TSL 1 (best) BASIC19.94■□□□□ 0.78
NPHP3Q7Z494 TBXAS1-208ENST00000448866 1963 ntAPPRIS P1 TSL 1 (best) BASIC19.94■□□□□ 0.78
NPHP3Q7Z494 CCDC144B-202ENST00000445752 2197 ntTSL 2 BASIC19.94■□□□□ 0.78
NPHP3Q7Z494 AP000704.1-201ENST00000637940 2182 ntTSL 5 BASIC19.94■□□□□ 0.78
NPHP3Q7Z494 HDHD3-201ENST00000238379 1834 ntAPPRIS P1 TSL 1 (best) BASIC19.94■□□□□ 0.78
NPHP3Q7Z494 FBXO5-202ENST00000367241 2221 ntTSL 1 (best) BASIC19.94■□□□□ 0.78
NPHP3Q7Z494 SYT3-202ENST00000593901 2836 ntAPPRIS P1 TSL 1 (best) BASIC19.94■□□□□ 0.78
NPHP3Q7Z494 FAM3B-201ENST00000357985 1088 ntAPPRIS P3 TSL 1 (best) BASIC19.94■□□□□ 0.78
NPHP3Q7Z494 MIR645-201ENST00000385283 94 ntBASIC19.94■□□□□ 0.78
NPHP3Q7Z494 TRBV4-1-201ENST00000390357 373 ntAPPRIS P1 BASIC19.94■□□□□ 0.78
NPHP3Q7Z494 TRBV4-2-201ENST00000390392 455 ntAPPRIS P1 BASIC19.94■□□□□ 0.78
NPHP3Q7Z494 AC069208.1-205ENST00000456299 576 ntTSL 4 BASIC19.94■□□□□ 0.78
NPHP3Q7Z494 FAHD2CP-203ENST00000467292 965 ntTSL 2 BASIC19.94■□□□□ 0.78
NPHP3Q7Z494 AC037486.1-201ENST00000523792 790 ntTSL 1 (best) BASIC19.94■□□□□ 0.78
NPHP3Q7Z494 OR5BD1P-201ENST00000532527 817 ntBASIC19.94■□□□□ 0.78
NPHP3Q7Z494 FXYD6-FXYD2-201ENST00000532984 670 ntTSL 3 BASIC19.94■□□□□ 0.78
NPHP3Q7Z494 TMEM14C-205ENST00000541412 1177 ntAPPRIS P1 TSL 2 BASIC19.94■□□□□ 0.78
NPHP3Q7Z494 AC125603.3-201ENST00000550742 486 ntTSL 3 BASIC19.94■□□□□ 0.78
NPHP3Q7Z494 AC025048.2-201ENST00000590744 786 ntTSL 2 BASIC19.94■□□□□ 0.78
NPHP3Q7Z494 CSAG3-203ENST00000638835 793 ntAPPRIS ALT2 TSL 1 (best) BASIC19.94■□□□□ 0.78
NPHP3Q7Z494 CSAG2-204ENST00000640702 793 ntAPPRIS ALT2 TSL 1 (best) BASIC19.94■□□□□ 0.78
NPHP3Q7Z494 PRR5-203ENST00000403581 2279 ntTSL 2 BASIC19.94■□□□□ 0.78
NPHP3Q7Z494 GNA13-201ENST00000439174 4922 ntAPPRIS P1 TSL 1 (best) BASIC19.94■□□□□ 0.78
NPHP3Q7Z494 AC090616.6-203ENST00000579186 1945 ntBASIC19.94■□□□□ 0.78
NPHP3Q7Z494 AC005906.2-217ENST00000639573 1711 ntTSL 5 BASIC19.94■□□□□ 0.78
NPHP3Q7Z494 ZMYND12-201ENST00000372565 1775 ntAPPRIS P1 TSL 1 (best) BASIC19.93■□□□□ 0.78
NPHP3Q7Z494 ZNF286A-204ENST00000464847 5616 ntAPPRIS P1 TSL 1 (best) BASIC19.93■□□□□ 0.78
Retrieved 100 of 98,524 protein–RNA pairs in 53.7 ms