Protein–RNA interactions for Protein: P62891

RPL39, 60S ribosomal protein L39, humanhuman

Known RBP Predictions only

Length 51 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
RPL39P62891 BRPF1-205ENST00000433861 4304 ntTSL 2 BASIC10.69□□□□□ -0.7
RPL39P62891 USP48-213ENST00000529637 3228 ntTSL 1 (best) BASIC10.69□□□□□ -0.7
RPL39P62891 MTMR9-201ENST00000221086 7481 ntAPPRIS P1 TSL 1 (best) BASIC10.69□□□□□ -0.7
RPL39P62891 RNF14-201ENST00000347642 4213 ntAPPRIS P1 TSL 2 BASIC10.69□□□□□ -0.7
RPL39P62891 CTSD-211ENST00000637387 1597 ntAPPRIS ALT2 TSL 5 BASIC10.69□□□□□ -0.7
RPL39P62891 NUDT3-201ENST00000607016 9905 ntAPPRIS P1 TSL 1 (best) BASIC10.69□□□□□ -0.7
RPL39P62891 FLI1-201ENST00000281428 4151 ntTSL 1 (best) BASIC10.69□□□□□ -0.7
RPL39P62891 ELAC2-201ENST00000338034 3148 ntAPPRIS P1 TSL 1 (best) BASIC10.69□□□□□ -0.7
RPL39P62891 OPRL1-203ENST00000355631 3147 ntAPPRIS P1 TSL 1 (best) BASIC10.69□□□□□ -0.7
RPL39P62891 CCDC43-203ENST00000588210 2067 ntAPPRIS ALT1 TSL 1 (best) BASIC10.69□□□□□ -0.7
RPL39P62891 SLC22A12-202ENST00000377567 2599 ntTSL 5 BASIC10.69□□□□□ -0.7
RPL39P62891 CLCNKB-204ENST00000619181 1544 ntTSL 5 BASIC10.68□□□□□ -0.7
RPL39P62891 MYLK-203ENST00000359169 7585 ntAPPRIS P3 TSL 5 BASIC10.68□□□□□ -0.7
RPL39P62891 FAM155B-201ENST00000252338 4013 ntAPPRIS P1 TSL 1 (best) BASIC10.68□□□□□ -0.7
RPL39P62891 AC016397.2-201ENST00000624848 1985 ntBASIC10.68□□□□□ -0.7
RPL39P62891 NFYC-205ENST00000372654 1455 ntAPPRIS P3 TSL 1 (best) BASIC10.68□□□□□ -0.7
RPL39P62891 NR1H3-203ENST00000405853 1480 ntTSL 1 (best) BASIC10.68□□□□□ -0.7
RPL39P62891 AC062028.1-203ENST00000447433 1472 ntTSL 1 (best) BASIC10.68□□□□□ -0.7
RPL39P62891 SCAMP5-202ENST00000425597 3411 ntAPPRIS P1 TSL 1 (best) BASIC10.68□□□□□ -0.7
RPL39P62891 SEPT7-202ENST00000399034 4399 ntTSL 5 BASIC10.68□□□□□ -0.7
RPL39P62891 ATG10-202ENST00000355178 1438 ntTSL 2 BASIC10.68□□□□□ -0.7
RPL39P62891 ZNF251-201ENST00000292562 2807 ntAPPRIS P1 TSL 2 BASIC10.68□□□□□ -0.7
RPL39P62891 FAM230B-201ENST00000415376 1859 ntTSL 2 BASIC10.68□□□□□ -0.7
RPL39P62891 AC008079.1-201ENST00000434390 1859 ntTSL 5 BASIC10.68□□□□□ -0.7
RPL39P62891 GOLGA8M-201ENST00000563027 1899 ntAPPRIS P1 TSL 5 BASIC10.68□□□□□ -0.7
RPL39P62891 PGLYRP2-201ENST00000292609 2758 ntAPPRIS ALT2 TSL 1 (best) BASIC10.68□□□□□ -0.7
RPL39P62891 PCMTD2-204ENST00000369758 3212 ntTSL 1 (best) BASIC10.68□□□□□ -0.7
RPL39P62891 TGFB1I1-202ENST00000394858 1803 ntAPPRIS P3 TSL 1 (best) BASIC10.68□□□□□ -0.7
RPL39P62891 SMYD1-203ENST00000444564 1816 ntTSL 5 BASIC10.68□□□□□ -0.7
RPL39P62891 PKM-220ENST00000568459 1806 ntAPPRIS ALT1 TSL 1 (best) BASIC10.68□□□□□ -0.7
RPL39P62891 AP4B1-201ENST00000256658 2742 ntAPPRIS P1 TSL 1 (best) BASIC10.68□□□□□ -0.7
RPL39P62891 ATRIP-204ENST00000412052 2721 ntTSL 1 (best) BASIC10.68□□□□□ -0.7
RPL39P62891 NUP153-203ENST00000613258 5811 ntAPPRIS ALT2 TSL 1 (best) BASIC10.68□□□□□ -0.7
RPL39P62891 PTPA-205ENST00000357197 2653 ntTSL 2 BASIC10.68□□□□□ -0.7
RPL39P62891 GOLGA8VP-201ENST00000559009 1798 ntBASIC10.68□□□□□ -0.7
RPL39P62891 BORCS5-202ENST00000314565 4840 ntAPPRIS P1 TSL 1 (best) BASIC10.68□□□□□ -0.7
RPL39P62891 ITGB4-202ENST00000449880 5689 ntAPPRIS P3 TSL 1 (best) BASIC10.68□□□□□ -0.7
RPL39P62891 ZNF79-202ENST00000543471 2194 ntTSL 2 BASIC10.68□□□□□ -0.7
RPL39P62891 ZNF79-203ENST00000612342 2192 ntTSL 2 BASIC10.68□□□□□ -0.7
RPL39P62891 TPGS2-202ENST00000383056 1726 ntAPPRIS ALT2 TSL 1 (best) BASIC10.68□□□□□ -0.7
RPL39P62891 EPHA5-204ENST00000511294 5176 ntAPPRIS ALT2 TSL 1 (best) BASIC10.68□□□□□ -0.7
RPL39P62891 FAM189A1-201ENST00000261275 4705 ntAPPRIS P1 TSL 5 BASIC10.68□□□□□ -0.7
RPL39P62891 PAGE5-201ENST00000289619 741 ntAPPRIS P3 TSL 1 (best) BASIC10.68□□□□□ -0.7
RPL39P62891 EXOSC4-201ENST00000316052 887 ntAPPRIS P1 TSL 1 (best) BASIC10.68□□□□□ -0.7
RPL39P62891 AMACR-204ENST00000382085 1195 ntTSL 1 (best) BASIC10.68□□□□□ -0.7
RPL39P62891 MAPK15-202ENST00000395107 834 ntTSL 1 (best) BASIC10.68□□□□□ -0.7
RPL39P62891 NDUFAF3-203ENST00000395458 808 ntTSL 2 BASIC10.68□□□□□ -0.7
RPL39P62891 YWHAZ-204ENST00000395953 994 ntAPPRIS P1 TSL 5 BASIC10.68□□□□□ -0.7
RPL39P62891 AL133267.1-201ENST00000398220 340 ntBASIC10.68□□□□□ -0.7
RPL39P62891 HRAS-204ENST00000417302 1233 ntTSL 5 BASIC10.68□□□□□ -0.7
RPL39P62891 PRSS42-201ENST00000429665 882 ntAPPRIS P1 TSL 1 (best) BASIC10.68□□□□□ -0.7
RPL39P62891 ADH5P3-201ENST00000433842 1137 ntBASIC10.68□□□□□ -0.7
RPL39P62891 KRT18P64-201ENST00000434946 1219 ntBASIC10.68□□□□□ -0.7
RPL39P62891 TMEM91-205ENST00000436170 864 ntTSL 5 BASIC10.68□□□□□ -0.7
RPL39P62891 DNAJB6-209ENST00000443280 1159 ntTSL 2 BASIC10.68□□□□□ -0.7
RPL39P62891 PQLC2L-205ENST00000461040 563 ntAPPRIS ALT2 TSL 3 BASIC10.68□□□□□ -0.7
RPL39P62891 DUSP13-205ENST00000464872 684 ntTSL 3 BASIC10.68□□□□□ -0.7
RPL39P62891 AL391335.1-201ENST00000504583 535 ntTSL 4 BASIC10.68□□□□□ -0.7
RPL39P62891 MRFAP1-203ENST00000507420 563 ntAPPRIS P1 TSL 4 BASIC10.68□□□□□ -0.7
RPL39P62891 LINC01485-205ENST00000523617 586 ntTSL 2 BASIC10.68□□□□□ -0.7
RPL39P62891 BANF1P1-201ENST00000553684 263 ntBASIC10.68□□□□□ -0.7
RPL39P62891 DUSP13-212ENST00000605915 1015 ntTSL 5 BASIC10.68□□□□□ -0.7
RPL39P62891 AC026120.1-201ENST00000611536 926 ntBASIC10.68□□□□□ -0.7
RPL39P62891 HOXA11-AS1_5.1-201ENST00000620211 203 ntBASIC10.68□□□□□ -0.7
RPL39P62891 AC092634.8-201ENST00000639687 773 ntTSL 5 BASIC10.68□□□□□ -0.7
RPL39P62891 AP002851.1-201ENST00000640504 2130 ntTSL 5 BASIC10.68□□□□□ -0.7
RPL39P62891 AL645728.2-202ENST00000641679 227 ntBASIC10.68□□□□□ -0.7
RPL39P62891 AC092902.6-201ENST00000641783 218 ntBASIC10.68□□□□□ -0.7
RPL39P62891 FOXM1-203ENST00000361953 3370 ntAPPRIS ALT1 TSL 1 (best) BASIC10.68□□□□□ -0.7
RPL39P62891 ZNF202-206ENST00000529691 3384 ntAPPRIS P1 TSL 2 BASIC10.68□□□□□ -0.7
RPL39P62891 CCT4-201ENST00000394440 2520 ntAPPRIS P1 TSL 1 (best) BASIC10.68□□□□□ -0.7
RPL39P62891 NFYA-202ENST00000353205 1660 ntTSL 5 BASIC10.68□□□□□ -0.7
RPL39P62891 HARS2-201ENST00000230771 2483 ntAPPRIS P1 TSL 1 (best) BASIC10.68□□□□□ -0.7
RPL39P62891 TONSL-201ENST00000409379 4502 ntAPPRIS P1 TSL 1 (best) BASIC10.68□□□□□ -0.7
RPL39P62891 MED12L-202ENST00000309237 2862 ntAPPRIS ALT2 TSL 2 BASIC10.68□□□□□ -0.7
RPL39P62891 PHLDB2-204ENST00000431670 6127 ntAPPRIS P1 TSL 1 (best) BASIC10.68□□□□□ -0.7
RPL39P62891 CELF1-214ENST00000531165 3650 ntTSL 2 BASIC10.68□□□□□ -0.7
RPL39P62891 FKBP9-214ENST00000538336 3621 ntTSL 2 BASIC10.68□□□□□ -0.7
RPL39P62891 KCNG4-201ENST00000308251 5179 ntAPPRIS P1 TSL 1 (best) BASIC10.68□□□□□ -0.7
RPL39P62891 EPS8L3-202ENST00000361965 1971 ntAPPRIS ALT1 TSL 1 (best) BASIC10.68□□□□□ -0.7
RPL39P62891 DDX55-203ENST00000421670 1574 ntTSL 1 (best) BASIC10.68□□□□□ -0.7
RPL39P62891 MEX3B-202ENST00000558133 4333 ntBASIC10.68□□□□□ -0.7
RPL39P62891 AC012617.1-204ENST00000586340 2305 ntBASIC10.68□□□□□ -0.7
RPL39P62891 ZNF541-202ENST00000314121 4631 ntAPPRIS ALT2 TSL 5 BASIC10.68□□□□□ -0.7
RPL39P62891 ATL3-203ENST00000538786 1920 ntAPPRIS ALT2 TSL 2 BASIC10.68□□□□□ -0.7
RPL39P62891 ASH2L-201ENST00000343823 3090 ntAPPRIS P1 TSL 1 (best) BASIC10.68□□□□□ -0.7
RPL39P62891 FGF12-207ENST00000454309 3058 ntAPPRIS P1 TSL 1 (best) BASIC10.68□□□□□ -0.7
RPL39P62891 IMPDH1P4-201ENST00000445028 1534 ntBASIC10.68□□□□□ -0.7
RPL39P62891 ZFP82-201ENST00000392161 2623 ntAPPRIS P1 TSL 1 (best) BASIC10.68□□□□□ -0.7
RPL39P62891 FRMD8-201ENST00000317568 3723 ntAPPRIS P1 TSL 1 (best) BASIC10.68□□□□□ -0.7
RPL39P62891 AC051649.2-201ENST00000640310 3319 ntAPPRIS P1 BASIC10.68□□□□□ -0.7
RPL39P62891 INTS1-201ENST00000404767 6959 ntAPPRIS P1 TSL 5 BASIC10.68□□□□□ -0.7
RPL39P62891 VRK3-207ENST00000594092 1831 ntAPPRIS ALT2 TSL 1 (best) BASIC10.68□□□□□ -0.7
RPL39P62891 DEK-201ENST00000244776 1441 ntTSL 2 BASIC10.67□□□□□ -0.7
RPL39P62891 HEPN1-201ENST00000408930 1434 ntAPPRIS P1 BASIC10.67□□□□□ -0.7
RPL39P62891 RIPOR1-204ENST00000428437 4152 ntAPPRIS ALT2 TSL 2 BASIC10.67□□□□□ -0.7
RPL39P62891 PDE2A-206ENST00000444035 4193 ntAPPRIS ALT1 TSL 5 BASIC10.67□□□□□ -0.7
RPL39P62891 HSPH1-202ENST00000380405 3480 ntTSL 1 (best) BASIC10.67□□□□□ -0.7
RPL39P62891 SYCP2L-201ENST00000283141 3130 ntAPPRIS P2 TSL 1 (best) BASIC10.67□□□□□ -0.7
RPL39P62891 MCRIP1-207ENST00000574190 2775 ntAPPRIS P1 TSL 2 BASIC10.67□□□□□ -0.7
Retrieved 100 of 98,524 protein–RNA pairs in 58.6 ms