Protein–RNA interactions for Protein: P61968

LMO4, LIM domain transcription factor LMO4, humanhuman

Predictions only

Length 165 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LMO4P61968 GLT1D1-201ENST00000281703 2725 ntTSL 2 BASIC12.22□□□□□ -0.45
LMO4P61968 WASF1-207ENST00000392589 3220 ntAPPRIS P1 TSL 5 BASIC12.22□□□□□ -0.45
LMO4P61968 MAGED4-211ENST00000599522 2669 ntTSL 1 (best) BASIC12.22□□□□□ -0.45
LMO4P61968 NEK11-210ENST00000510769 2149 ntTSL 2 BASIC12.22□□□□□ -0.45
LMO4P61968 TRMT11-201ENST00000334379 1565 ntAPPRIS P2 TSL 1 (best) BASIC12.22□□□□□ -0.45
LMO4P61968 ZNF385C-205ENST00000618554 2596 ntTSL 5 BASIC12.22□□□□□ -0.45
LMO4P61968 CLN5-208ENST00000636183 6664 ntAPPRIS P2 TSL 1 (best) BASIC12.22□□□□□ -0.45
LMO4P61968 COL2A1-202ENST00000380518 5071 ntAPPRIS ALT1 TSL 1 (best) BASIC12.21□□□□□ -0.45
LMO4P61968 AL589740.1-203ENST00000433637 1984 ntTSL 2 BASIC12.21□□□□□ -0.45
LMO4P61968 MYADM-202ENST00000391768 1492 ntAPPRIS P1 TSL 1 (best) BASIC12.21□□□□□ -0.45
LMO4P61968 APBB1-217ENST00000608645 1925 ntTSL 5 BASIC12.21□□□□□ -0.45
LMO4P61968 PITPNM1-202ENST00000436757 4216 ntAPPRIS ALT1 TSL 1 (best) BASIC12.21□□□□□ -0.45
LMO4P61968 MAP2K3-202ENST00000342679 2303 ntAPPRIS P1 TSL 1 (best) BASIC12.21□□□□□ -0.45
LMO4P61968 RNF157-AS1-204ENST00000590137 1812 ntTSL 2 BASIC12.21□□□□□ -0.45
LMO4P61968 AC112484.1-201ENST00000508239 2291 ntAPPRIS P5 TSL 2 BASIC12.21□□□□□ -0.45
LMO4P61968 ARVCF-204ENST00000406522 2682 ntTSL 5 BASIC12.21□□□□□ -0.45
LMO4P61968 MRPL37P1-201ENST00000592451 1337 ntBASIC12.21□□□□□ -0.45
LMO4P61968 FKBP9-201ENST00000242209 3462 ntAPPRIS P1 TSL 1 (best) BASIC12.21□□□□□ -0.45
LMO4P61968 MIB2-202ENST00000378708 3012 ntAPPRIS ALT2 TSL 5 BASIC12.21□□□□□ -0.45
LMO4P61968 PSD4-201ENST00000245796 5188 ntAPPRIS P2 TSL 1 (best) BASIC12.21□□□□□ -0.45
LMO4P61968 KNSTRN-201ENST00000249776 1714 ntAPPRIS P1 TSL 1 (best) BASIC12.21□□□□□ -0.45
LMO4P61968 AC022532.1-201ENST00000624563 1728 ntBASIC12.21□□□□□ -0.45
LMO4P61968 RAP2C-201ENST00000342983 3896 ntAPPRIS P1 TSL 1 (best) BASIC12.21□□□□□ -0.45
LMO4P61968 MAP2K3-201ENST00000316920 1246 ntTSL 5 BASIC12.21□□□□□ -0.45
LMO4P61968 ALG1L-201ENST00000340333 805 ntAPPRIS P3 TSL 1 (best) BASIC12.21□□□□□ -0.45
LMO4P61968 ELK2AP-201ENST00000392510 1007 ntBASIC12.21□□□□□ -0.45
LMO4P61968 ISCA2P1-201ENST00000425548 448 ntBASIC12.21□□□□□ -0.45
LMO4P61968 HLA-DPB2-205ENST00000435074 1188 ntBASIC12.21□□□□□ -0.45
LMO4P61968 AL596276.2-201ENST00000447525 331 ntBASIC12.21□□□□□ -0.45
LMO4P61968 AL160290.2-202ENST00000448671 574 ntTSL 3 BASIC12.21□□□□□ -0.45
LMO4P61968 SNHG14-209ENST00000456576 544 ntTSL 1 (best) BASIC12.21□□□□□ -0.45
LMO4P61968 AP000696.1-201ENST00000457669 1133 ntTSL 3 BASIC12.21□□□□□ -0.45
LMO4P61968 AC018680.1-202ENST00000500324 525 ntTSL 3 BASIC12.21□□□□□ -0.45
LMO4P61968 AL355310.3-201ENST00000526411 582 ntTSL 3 BASIC12.21□□□□□ -0.45
LMO4P61968 IFITM3-202ENST00000526811 543 ntAPPRIS ALT1 TSL 5 BASIC12.21□□□□□ -0.45
LMO4P61968 CCNB2-203ENST00000559622 1064 ntTSL 5 BASIC12.21□□□□□ -0.45
LMO4P61968 AC015660.1-201ENST00000560103 395 ntTSL 3 BASIC12.21□□□□□ -0.45
LMO4P61968 COG4-212ENST00000564653 590 ntTSL 5 BASIC12.21□□□□□ -0.45
LMO4P61968 TBC1D16-203ENST00000570373 961 ntTSL 5 BASIC12.21□□□□□ -0.45
LMO4P61968 ALG1L-202ENST00000611639 701 ntAPPRIS ALT2 TSL 3 BASIC12.21□□□□□ -0.45
LMO4P61968 ARL16-215ENST00000622299 1053 ntAPPRIS P1 TSL 1 (best) BASIC12.21□□□□□ -0.45
LMO4P61968 AC079336.7-201ENST00000623428 1078 ntBASIC12.21□□□□□ -0.45
LMO4P61968 CYP1B1-AS1-221ENST00000627172 995 ntTSL 5 BASIC12.21□□□□□ -0.45
LMO4P61968 NEDD4-202ENST00000435532 5869 ntAPPRIS P1 TSL 1 (best) BASIC12.21□□□□□ -0.45
LMO4P61968 DUSP11-201ENST00000272444 1653 ntAPPRIS P1 TSL 1 (best) BASIC12.21□□□□□ -0.45
LMO4P61968 BRF1-203ENST00000379937 3314 ntTSL 1 (best) BASIC12.21□□□□□ -0.45
LMO4P61968 TM9SF1-202ENST00000396854 2055 ntTSL 1 (best) BASIC12.21□□□□□ -0.45
LMO4P61968 MAGEA8-205ENST00000542674 2084 ntAPPRIS P1 TSL 3 BASIC12.21□□□□□ -0.45
LMO4P61968 FAM189A2-201ENST00000257515 2423 ntAPPRIS P1 TSL 1 (best) BASIC12.21□□□□□ -0.46
LMO4P61968 PPP3CA-207ENST00000512215 4007 ntTSL 1 (best) BASIC12.21□□□□□ -0.46
LMO4P61968 PHRF1-203ENST00000416188 5227 ntAPPRIS P3 TSL 1 (best) BASIC12.21□□□□□ -0.46
LMO4P61968 PIAS4-201ENST00000262971 3159 ntAPPRIS P1 TSL 1 (best) BASIC12.21□□□□□ -0.46
LMO4P61968 ZNF197-203ENST00000383744 1989 ntTSL 1 (best) BASIC12.21□□□□□ -0.46
LMO4P61968 TMEM132D-202ENST00000422113 5776 ntAPPRIS P1 TSL 1 (best) BASIC12.21□□□□□ -0.46
LMO4P61968 HGNC:18790-202ENST00000421177 4172 ntAPPRIS P1 TSL 5 BASIC12.21□□□□□ -0.46
LMO4P61968 PRR5-203ENST00000403581 2279 ntTSL 2 BASIC12.21□□□□□ -0.46
LMO4P61968 SPATS2L-218ENST00000451764 2250 ntAPPRIS P1 TSL 5 BASIC12.21□□□□□ -0.46
LMO4P61968 ARMC5-204ENST00000538189 3017 ntAPPRIS ALT2 TSL 2 BASIC12.21□□□□□ -0.46
LMO4P61968 BACE1-211ENST00000528053 4083 ntTSL 5 BASIC12.21□□□□□ -0.46
LMO4P61968 F10-203ENST00000409306 1450 ntTSL 3 BASIC12.21□□□□□ -0.46
LMO4P61968 GOSR2-203ENST00000415811 2171 ntTSL 5 BASIC12.2□□□□□ -0.46
LMO4P61968 ANKK1-201ENST00000303941 2543 ntAPPRIS P1 TSL 1 (best) BASIC12.2□□□□□ -0.46
LMO4P61968 SGCE-204ENST00000428696 1409 ntTSL 1 (best) BASIC12.2□□□□□ -0.46
LMO4P61968 RABL6-211ENST00000629216 1416 ntAPPRIS ALT2 TSL 5 BASIC12.2□□□□□ -0.46
LMO4P61968 ANKRD17-201ENST00000330838 7734 ntAPPRIS ALT2 TSL 2 BASIC12.2□□□□□ -0.46
LMO4P61968 PLCB1-203ENST00000378641 7323 ntTSL 1 (best) BASIC12.2□□□□□ -0.46
LMO4P61968 PELI2-201ENST00000267460 5909 ntAPPRIS P1 TSL 1 (best) BASIC12.2□□□□□ -0.46
LMO4P61968 MICALL2-201ENST00000297508 3121 ntAPPRIS P1 TSL 1 (best) BASIC12.2□□□□□ -0.46
LMO4P61968 CACFD1-202ENST00000316948 2794 ntAPPRIS P3 TSL 1 (best) BASIC12.2□□□□□ -0.46
LMO4P61968 TLDC2-201ENST00000217320 2083 ntAPPRIS P1 TSL 1 (best) BASIC12.2□□□□□ -0.46
LMO4P61968 BCAS4-201ENST00000358791 1378 ntAPPRIS ALT2 TSL 1 (best) BASIC12.2□□□□□ -0.46
LMO4P61968 MAPK13-203ENST00000373766 6196 ntTSL 1 (best) BASIC12.2□□□□□ -0.46
LMO4P61968 CBX7-201ENST00000216133 4081 ntAPPRIS P1 TSL 1 (best) BASIC12.2□□□□□ -0.46
LMO4P61968 SLITRK4-201ENST00000338017 3357 ntAPPRIS P1 TSL 1 (best) BASIC12.2□□□□□ -0.46
LMO4P61968 CADPS2-204ENST00000412584 4308 ntAPPRIS P2 TSL 1 (best) BASIC12.2□□□□□ -0.46
LMO4P61968 GUCD1-206ENST00000435822 3613 ntAPPRIS ALT1 TSL 1 (best) BASIC12.2□□□□□ -0.46
LMO4P61968 CRHBP-201ENST00000274368 1980 ntAPPRIS P1 TSL 1 (best) BASIC12.2□□□□□ -0.46
LMO4P61968 FRS2-206ENST00000549921 1952 ntAPPRIS P1 TSL 1 (best) BASIC12.2□□□□□ -0.46
LMO4P61968 LRCH3-202ENST00000414675 2299 ntAPPRIS ALT2 TSL 2 BASIC12.2□□□□□ -0.46
LMO4P61968 AC011270.2-201ENST00000624293 2550 ntBASIC12.2□□□□□ -0.46
LMO4P61968 TLL1-204ENST00000507499 4818 ntTSL 1 (best) BASIC12.2□□□□□ -0.46
LMO4P61968 GP5-201ENST00000401815 3534 ntAPPRIS P1 BASIC12.2□□□□□ -0.46
LMO4P61968 LARP6-201ENST00000299213 4469 ntAPPRIS P1 TSL 1 (best) BASIC12.2□□□□□ -0.46
LMO4P61968 OR1J1-201ENST00000259357 969 ntAPPRIS P1 BASIC12.2□□□□□ -0.46
LMO4P61968 HIST1H1B-201ENST00000331442 681 ntAPPRIS P1 BASIC12.2□□□□□ -0.46
LMO4P61968 PSMB5-202ENST00000361611 1294 ntAPPRIS P1 TSL 1 (best) BASIC12.2□□□□□ -0.46
LMO4P61968 AL391119.1-201ENST00000416563 271 ntTSL 5 BASIC12.2□□□□□ -0.46
LMO4P61968 PSMB5-203ENST00000425762 900 ntTSL 1 (best) BASIC12.2□□□□□ -0.46
LMO4P61968 PTPA-215ENST00000432124 567 ntTSL 4 BASIC12.2□□□□□ -0.46
LMO4P61968 BX324167.1-201ENST00000451118 805 ntTSL 5 BASIC12.2□□□□□ -0.46
LMO4P61968 AC006122.1-201ENST00000493323 440 ntBASIC12.2□□□□□ -0.46
LMO4P61968 EEF1D-218ENST00000526838 926 ntAPPRIS ALT2 TSL 2 BASIC12.2□□□□□ -0.46
LMO4P61968 NDUFC2-204ENST00000528164 561 ntTSL 2 BASIC12.2□□□□□ -0.46
LMO4P61968 AL132639.2-202ENST00000553520 467 ntTSL 2 BASIC12.2□□□□□ -0.46
LMO4P61968 NAT9-212ENST00000581136 1011 ntAPPRIS P1 TSL 2 BASIC12.2□□□□□ -0.46
LMO4P61968 LINC01517-203ENST00000616194 908 ntTSL 5 BASIC12.2□□□□□ -0.46
LMO4P61968 CDK18-201ENST00000360066 3141 ntAPPRIS P1 TSL 1 (best) BASIC12.2□□□□□ -0.46
LMO4P61968 CIAPIN1-201ENST00000394391 2182 ntAPPRIS P1 TSL 1 (best) BASIC12.2□□□□□ -0.46
LMO4P61968 MBD1-211ENST00000585595 2179 ntAPPRIS ALT2 TSL 2 BASIC12.2□□□□□ -0.46
LMO4P61968 ZMYND15-204ENST00000573751 2409 ntTSL 2 BASIC12.2□□□□□ -0.46
Retrieved 100 of 98,524 protein–RNA pairs in 87.1 ms