Protein–RNA interactions for Protein: P35499

SCN4A, Sodium channel protein type 4 subunit alpha, humanhuman

Predictions only

Length 1,836 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SCN4AP35499 OXSM-201ENST00000280701 1519 ntAPPRIS P1 TSL 1 (best) BASIC17.18■□□□□ 0.34
SCN4AP35499 MKRN2-202ENST00000411987 1436 ntTSL 2 BASIC17.18■□□□□ 0.34
SCN4AP35499 DDX42-202ENST00000389924 3939 ntAPPRIS P1 TSL 5 BASIC17.18■□□□□ 0.34
SCN4AP35499 ZNF821-203ENST00000446827 1822 ntTSL 1 (best) BASIC17.18■□□□□ 0.34
SCN4AP35499 NBL1-211ENST00000618761 2051 ntAPPRIS P3 TSL 1 (best) BASIC17.18■□□□□ 0.34
SCN4AP35499 PLVAP-201ENST00000252590 2305 ntAPPRIS P1 TSL 1 (best) BASIC17.18■□□□□ 0.34
SCN4AP35499 LRRC14-201ENST00000292524 5328 ntAPPRIS P1 TSL 1 (best) BASIC17.17■□□□□ 0.34
SCN4AP35499 AC139712.1-201ENST00000378256 1875 ntBASIC17.17■□□□□ 0.34
SCN4AP35499 MSANTD2P1-201ENST00000445341 1368 ntBASIC17.17■□□□□ 0.34
SCN4AP35499 UBE2D1-204ENST00000615793 2621 ntTSL 2 BASIC17.17■□□□□ 0.34
SCN4AP35499 NAP1L4-201ENST00000380542 2511 ntAPPRIS P1 TSL 1 (best) BASIC17.17■□□□□ 0.34
SCN4AP35499 AC007298.2-201ENST00000551849 862 ntTSL 3 BASIC17.17■□□□□ 0.34
SCN4AP35499 SCGB1B2P-201ENST00000595013 612 ntTSL 2 BASIC17.17■□□□□ 0.34
SCN4AP35499 KRT2-201ENST00000309680 2403 ntAPPRIS P1 TSL 1 (best) BASIC17.17■□□□□ 0.34
SCN4AP35499 AC090616.6-203ENST00000579186 1945 ntBASIC17.17■□□□□ 0.34
SCN4AP35499 CARD10-202ENST00000403299 4113 ntAPPRIS P1 TSL 5 BASIC17.17■□□□□ 0.34
SCN4AP35499 ACOT7-210ENST00000608083 1403 ntAPPRIS ALT2 TSL 1 (best) BASIC17.17■□□□□ 0.34
SCN4AP35499 AC092135.3-201ENST00000624151 1846 ntBASIC17.17■□□□□ 0.34
SCN4AP35499 RCC1-201ENST00000373831 1577 ntTSL 1 (best) BASIC17.17■□□□□ 0.34
SCN4AP35499 ZNF586-202ENST00000396150 1977 ntTSL 1 (best) BASIC17.17■□□□□ 0.34
SCN4AP35499 SEL1L3-202ENST00000399878 4520 ntAPPRIS P1 TSL 1 (best) BASIC17.17■□□□□ 0.34
SCN4AP35499 NR1H3-203ENST00000405853 1480 ntTSL 1 (best) BASIC17.17■□□□□ 0.34
SCN4AP35499 CCDC120-202ENST00000496529 2415 ntAPPRIS P3 TSL 2 BASIC17.17■□□□□ 0.34
SCN4AP35499 ZCCHC17-201ENST00000344147 1605 ntAPPRIS P1 TSL 1 (best) BASIC17.17■□□□□ 0.34
SCN4AP35499 NPTX1-201ENST00000306773 5122 ntAPPRIS P1 TSL 1 (best) BASIC17.17■□□□□ 0.34
SCN4AP35499 ATRN-201ENST00000262919 8633 ntAPPRIS P4 TSL 5 BASIC17.17■□□□□ 0.34
SCN4AP35499 CD276-213ENST00000561213 2690 ntAPPRIS ALT2 TSL 2 BASIC17.17■□□□□ 0.34
SCN4AP35499 HNRNPA1-201ENST00000330752 1294 ntTSL 5 BASIC17.17■□□□□ 0.34
SCN4AP35499 AC022080.1-201ENST00000366255 781 ntBASIC17.17■□□□□ 0.34
SCN4AP35499 TRBV5-7-201ENST00000390378 343 ntAPPRIS P1 BASIC17.17■□□□□ 0.34
SCN4AP35499 MFAP3-202ENST00000439768 1186 ntTSL 2 BASIC17.17■□□□□ 0.34
SCN4AP35499 CASP3-205ENST00000517513 964 ntTSL 5 BASIC17.17■□□□□ 0.34
SCN4AP35499 AC090152.1-203ENST00000517898 1106 ntTSL 2 BASIC17.17■□□□□ 0.34
SCN4AP35499 PPCDC-206ENST00000564923 757 ntTSL 5 BASIC17.17■□□□□ 0.34
SCN4AP35499 KLKP1-202ENST00000597246 1125 ntTSL 1 (best) BASIC17.17■□□□□ 0.34
SCN4AP35499 AC092073.1-202ENST00000606020 653 ntTSL 3 BASIC17.17■□□□□ 0.34
SCN4AP35499 SGK3-211ENST00000522398 3106 ntAPPRIS P1 TSL 5 BASIC17.17■□□□□ 0.34
SCN4AP35499 SSR4P1-203ENST00000599569 2260 ntBASIC17.17■□□□□ 0.34
SCN4AP35499 UIMC1-201ENST00000377227 2570 ntAPPRIS P1 TSL 1 (best) BASIC17.16■□□□□ 0.34
SCN4AP35499 HYOU1-218ENST00000614668 1569 ntTSL 1 (best) BASIC17.16■□□□□ 0.34
SCN4AP35499 KCNQ2-207ENST00000370224 3004 ntTSL 5 BASIC17.16■□□□□ 0.34
SCN4AP35499 GRM6-201ENST00000231188 6143 ntAPPRIS P1 TSL 2 BASIC17.16■□□□□ 0.34
SCN4AP35499 DTX2-201ENST00000324432 2769 ntAPPRIS P3 TSL 1 (best) BASIC17.16■□□□□ 0.34
SCN4AP35499 KLK4-201ENST00000324041 1347 ntAPPRIS P1 TSL 1 (best) BASIC17.16■□□□□ 0.34
SCN4AP35499 TAGLN2-202ENST00000368096 1603 ntTSL 1 (best) BASIC17.16■□□□□ 0.34
SCN4AP35499 TAGLN2-203ENST00000368097 1604 ntAPPRIS P1 TSL 1 (best) BASIC17.16■□□□□ 0.34
SCN4AP35499 SGK2-206ENST00000423407 1915 ntAPPRIS P1 TSL 1 (best) BASIC17.16■□□□□ 0.34
SCN4AP35499 FIGNL2-201ENST00000564840 4693 ntAPPRIS P1 TSL 5 BASIC17.16■□□□□ 0.34
SCN4AP35499 NPRL3-211ENST00000611875 2881 ntAPPRIS P1 TSL 5 BASIC17.16■□□□□ 0.34
SCN4AP35499 SUPT20HL2-201ENST00000486479 2409 ntBASIC17.16■□□□□ 0.34
SCN4AP35499 NECTIN1-203ENST00000341398 1377 ntTSL 1 (best) BASIC17.16■□□□□ 0.34
SCN4AP35499 CICP13-201ENST00000422015 2789 ntBASIC17.16■□□□□ 0.34
SCN4AP35499 CTSB-228ENST00000533455 2009 ntAPPRIS P1 TSL 1 (best) BASIC17.16■□□□□ 0.34
SCN4AP35499 PCSK4-201ENST00000300954 2661 ntAPPRIS P1 TSL 1 (best) BASIC17.16■□□□□ 0.34
SCN4AP35499 PLSCR1-214ENST00000487389 1443 ntAPPRIS ALT2 TSL 5 BASIC17.16■□□□□ 0.34
SCN4AP35499 OSBPL6-203ENST00000357080 2217 ntTSL 1 (best) BASIC17.16■□□□□ 0.34
SCN4AP35499 FAM163B-201ENST00000356873 1131 ntAPPRIS P1 TSL 1 (best) BASIC17.16■□□□□ 0.34
SCN4AP35499 MRPL18-201ENST00000367034 978 ntAPPRIS P1 TSL 1 (best) BASIC17.16■□□□□ 0.34
SCN4AP35499 Z95624.1-201ENST00000413528 628 ntTSL 5 BASIC17.16■□□□□ 0.34
SCN4AP35499 AC006987.1-201ENST00000413610 527 ntBASIC17.16■□□□□ 0.34
SCN4AP35499 AC136604.1-202ENST00000425471 771 ntBASIC17.16■□□□□ 0.34
SCN4AP35499 AC117945.1-201ENST00000451375 463 ntTSL 3 BASIC17.16■□□□□ 0.34
SCN4AP35499 HOXB-AS3-206ENST00000474040 741 ntTSL 3 BASIC17.16■□□□□ 0.34
SCN4AP35499 HOXC-AS3-203ENST00000514702 368 ntTSL 3 BASIC17.16■□□□□ 0.34
SCN4AP35499 DLK1-205ENST00000556051 469 ntTSL 2 BASIC17.16■□□□□ 0.34
SCN4AP35499 AC092756.1-201ENST00000560248 448 ntTSL 3 BASIC17.16■□□□□ 0.34
SCN4AP35499 PNPT1-207ENST00000625249 216 ntTSL 5 BASIC17.16■□□□□ 0.34
SCN4AP35499 AC110057.1-201ENST00000636031 898 ntBASIC17.16■□□□□ 0.34
SCN4AP35499 PAK4-202ENST00000358301 2739 ntAPPRIS P1 TSL 1 (best) BASIC17.16■□□□□ 0.34
SCN4AP35499 PIPOX-201ENST00000323372 2414 ntAPPRIS P1 TSL 1 (best) BASIC17.16■□□□□ 0.34
SCN4AP35499 MLF1-216ENST00000618075 2116 ntTSL 5 BASIC17.16■□□□□ 0.34
SCN4AP35499 SYBU-219ENST00000528647 2995 ntAPPRIS P4 TSL 2 BASIC17.16■□□□□ 0.34
SCN4AP35499 C12orf65-204ENST00000429587 1326 ntAPPRIS P2 TSL 2 BASIC17.16■□□□□ 0.34
SCN4AP35499 RAB43-201ENST00000315150 4467 ntAPPRIS P1 TSL 1 (best) BASIC17.16■□□□□ 0.34
SCN4AP35499 PROSER2-201ENST00000277570 3333 ntAPPRIS P2 TSL 1 (best) BASIC17.16■□□□□ 0.34
SCN4AP35499 PUS1-208ENST00000542167 2151 ntTSL 5 BASIC17.16■□□□□ 0.34
SCN4AP35499 SVOPL-203ENST00000421622 1653 ntTSL 5 BASIC17.16■□□□□ 0.34
SCN4AP35499 AC067931.2-201ENST00000623655 2003 ntBASIC17.16■□□□□ 0.34
SCN4AP35499 PIGP-207ENST00000464265 3437 ntTSL 1 (best) BASIC17.15■□□□□ 0.34
SCN4AP35499 MAGEA2B-202ENST00000370293 1714 ntAPPRIS P1 TSL 2 BASIC17.15■□□□□ 0.34
SCN4AP35499 LINC00668-206ENST00000581725 1902 ntTSL 2 BASIC17.15■□□□□ 0.34
SCN4AP35499 HNRNPUL2-201ENST00000301785 5106 ntAPPRIS P1 TSL 1 (best) BASIC17.15■□□□□ 0.34
SCN4AP35499 ASCL1-201ENST00000266744 2472 ntAPPRIS P1 TSL 1 (best) BASIC17.15■□□□□ 0.34
SCN4AP35499 TOM1-209ENST00000447733 2317 ntTSL 2 BASIC17.15■□□□□ 0.34
SCN4AP35499 PGLYRP3-201ENST00000290722 1173 ntAPPRIS P1 TSL 1 (best) BASIC17.15■□□□□ 0.34
SCN4AP35499 TREM2-202ENST00000373113 1044 ntAPPRIS P3 TSL 1 (best) BASIC17.15■□□□□ 0.34
SCN4AP35499 CST1-202ENST00000398402 655 ntAPPRIS P1 TSL 5 BASIC17.15■□□□□ 0.34
SCN4AP35499 AL157823.1-201ENST00000403727 628 ntBASIC17.15■□□□□ 0.34
SCN4AP35499 LRRC3-AS1-201ENST00000426578 784 ntTSL 3 BASIC17.15■□□□□ 0.34
SCN4AP35499 AC093609.1-201ENST00000434020 952 ntTSL 2 BASIC17.15■□□□□ 0.34
SCN4AP35499 FOXP4-AS1-205ENST00000454812 575 ntTSL 2 BASIC17.15■□□□□ 0.34
SCN4AP35499 RN7SL788P-201ENST00000460504 316 ntBASIC17.15■□□□□ 0.34
SCN4AP35499 AC009163.5-202ENST00000571737 466 ntTSL 3 BASIC17.15■□□□□ 0.34
SCN4AP35499 GAS7-216ENST00000583882 553 ntTSL 5 BASIC17.15■□□□□ 0.34
SCN4AP35499 MCM8-AS1-201ENST00000613522 983 ntTSL 2 BASIC17.15■□□□□ 0.34
SCN4AP35499 ARHGAP5-203ENST00000396582 5786 ntTSL 1 (best) BASIC17.15■□□□□ 0.34
SCN4AP35499 AC087481.3-201ENST00000602886 1894 ntBASIC17.15■□□□□ 0.34
SCN4AP35499 ADAMTS19-205ENST00000638972 5089 ntAPPRIS P1 TSL 1 (best) BASIC17.15■□□□□ 0.34
SCN4AP35499 HDAC8-206ENST00000373571 2133 ntTSL 5 BASIC17.15■□□□□ 0.34
SCN4AP35499 RBCK1-201ENST00000353660 2511 ntTSL 1 (best) BASIC17.15■□□□□ 0.34
Retrieved 100 of 98,524 protein–RNA pairs in 64 ms