Protein–RNA interactions for Protein: P28370

SMARCA1, Probable global transcription activator SNF2L1, humanhuman

Predictions only

Length 1,054 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SMARCA1P28370 FAM189A2-201ENST00000257515 2423 ntAPPRIS P1 TSL 1 (best) BASIC17.12■□□□□ 0.33
SMARCA1P28370 EPS8L2-231ENST00000614442 3188 ntAPPRIS ALT2 TSL 5 BASIC17.12■□□□□ 0.33
SMARCA1P28370 LBHD1-201ENST00000354588 1320 ntAPPRIS P2 TSL 1 (best) BASIC17.12■□□□□ 0.33
SMARCA1P28370 ASB3-202ENST00000394717 1734 ntTSL 2 BASIC17.12■□□□□ 0.33
SMARCA1P28370 CALCR-203ENST00000394441 1774 ntAPPRIS P3 TSL 1 (best) BASIC17.12■□□□□ 0.33
SMARCA1P28370 ZNF644-201ENST00000337393 5763 ntAPPRIS P1 TSL 1 (best) BASIC17.12■□□□□ 0.33
SMARCA1P28370 ITSN1-209ENST00000399352 5408 ntTSL 1 (best) BASIC17.12■□□□□ 0.33
SMARCA1P28370 GPN1-212ENST00000616939 1832 ntAPPRIS P2 TSL 1 (best) BASIC17.12■□□□□ 0.33
SMARCA1P28370 PTOV1-214ENST00000600603 1443 ntTSL 1 (best) BASIC17.12■□□□□ 0.33
SMARCA1P28370 HIST1H2AG-201ENST00000359193 2250 ntAPPRIS P1 BASIC17.12■□□□□ 0.33
SMARCA1P28370 SLC29A1-204ENST00000371731 2258 ntAPPRIS P1 TSL 5 BASIC17.12■□□□□ 0.33
SMARCA1P28370 ACSF2-202ENST00000427954 2251 ntTSL 2 BASIC17.12■□□□□ 0.33
SMARCA1P28370 LDLR-202ENST00000455727 2333 ntTSL 2 BASIC17.12■□□□□ 0.33
SMARCA1P28370 TMPRSS13-203ENST00000524993 1950 ntAPPRIS P3 TSL 1 (best) BASIC17.11■□□□□ 0.33
SMARCA1P28370 RPARP-AS1-202ENST00000492465 1556 ntTSL 1 (best) BASIC17.11■□□□□ 0.33
SMARCA1P28370 ARHGEF28-211ENST00000512883 2936 ntTSL 2 BASIC17.11■□□□□ 0.33
SMARCA1P28370 GSTCD-206ENST00000507281 2091 ntTSL 5 BASIC17.11■□□□□ 0.33
SMARCA1P28370 HSPA12B-201ENST00000254963 3151 ntAPPRIS P1 TSL 1 (best) BASIC17.11■□□□□ 0.33
SMARCA1P28370 INSC-208ENST00000530161 1702 ntAPPRIS ALT2 TSL 1 (best) BASIC17.11■□□□□ 0.33
SMARCA1P28370 ADAM15-205ENST00000360674 2732 ntAPPRIS ALT2 TSL 1 (best) BASIC17.11■□□□□ 0.33
SMARCA1P28370 CNOT8-204ENST00000517876 2708 ntAPPRIS P1 TSL 5 BASIC17.11■□□□□ 0.33
SMARCA1P28370 TRPC4AP-201ENST00000252015 3226 ntAPPRIS P1 TSL 1 (best) BASIC17.11■□□□□ 0.33
SMARCA1P28370 MRPL34-201ENST00000252602 968 ntAPPRIS P2 TSL 1 (best) BASIC17.11■□□□□ 0.33
SMARCA1P28370 RUFY2-202ENST00000342616 983 ntTSL 2 BASIC17.11■□□□□ 0.33
SMARCA1P28370 SKA2-202ENST00000437036 625 ntTSL 2 BASIC17.11■□□□□ 0.33
SMARCA1P28370 HNRNPA1P36-201ENST00000521313 955 ntBASIC17.11■□□□□ 0.33
SMARCA1P28370 AC113192.2-201ENST00000525320 308 ntTSL 3 BASIC17.11■□□□□ 0.33
SMARCA1P28370 AC084859.1-201ENST00000533002 670 ntTSL 4 BASIC17.11■□□□□ 0.33
SMARCA1P28370 MT1H-202ENST00000569155 697 ntTSL 1 (best) BASIC17.11■□□□□ 0.33
SMARCA1P28370 AC008537.4-201ENST00000595728 1103 ntTSL 5 BASIC17.11■□□□□ 0.33
SMARCA1P28370 NCR1-206ENST00000598576 996 ntAPPRIS ALT2 TSL 5 BASIC17.11■□□□□ 0.33
SMARCA1P28370 AL023803.2-201ENST00000620080 638 ntBASIC17.11■□□□□ 0.33
SMARCA1P28370 FP565260.5-201ENST00000623188 479 ntTSL 3 BASIC17.11■□□□□ 0.33
SMARCA1P28370 AC114737.3-201ENST00000636708 570 ntTSL 4 BASIC17.11■□□□□ 0.33
SMARCA1P28370 ASH2L-212ENST00000545394 2808 ntTSL 2 BASIC17.11■□□□□ 0.33
SMARCA1P28370 MAP4K5-201ENST00000013125 4354 ntAPPRIS P1 TSL 1 (best) BASIC17.11■□□□□ 0.33
SMARCA1P28370 SCAMP4-202ENST00000409472 2394 ntTSL 2 BASIC17.11■□□□□ 0.33
SMARCA1P28370 AC009053.1-204ENST00000429810 2355 ntTSL 2 BASIC17.11■□□□□ 0.33
SMARCA1P28370 STK35-201ENST00000381482 6685 ntAPPRIS P1 TSL 5 BASIC17.11■□□□□ 0.33
SMARCA1P28370 RHOH-218ENST00000613272 1865 ntAPPRIS P1 TSL 3 BASIC17.11■□□□□ 0.33
SMARCA1P28370 ANKRD24-206ENST00000600132 4026 ntAPPRIS P2 TSL 5 BASIC17.11■□□□□ 0.33
SMARCA1P28370 MAP4-202ENST00000360240 5142 ntAPPRIS P3 TSL 1 (best) BASIC17.11■□□□□ 0.33
SMARCA1P28370 BRCC3-201ENST00000330045 2496 ntTSL 1 (best) BASIC17.11■□□□□ 0.33
SMARCA1P28370 PSMC3-212ENST00000602866 1373 ntAPPRIS ALT1 TSL 1 (best) BASIC17.11■□□□□ 0.33
SMARCA1P28370 SUGP2-202ENST00000337018 3640 ntAPPRIS P3 TSL 1 (best) BASIC17.11■□□□□ 0.33
SMARCA1P28370 UBAC2-202ENST00000376440 2525 ntTSL 2 BASIC17.11■□□□□ 0.33
SMARCA1P28370 TMTC1-206ENST00000551659 4228 ntAPPRIS ALT2 TSL 5 BASIC17.11■□□□□ 0.33
SMARCA1P28370 SHANK1-204ENST00000391814 6622 ntAPPRIS ALT2 TSL 5 BASIC17.11■□□□□ 0.33
SMARCA1P28370 PLAT-205ENST00000519510 2030 ntTSL 5 BASIC17.11■□□□□ 0.33
SMARCA1P28370 AL390755.1-201ENST00000623716 2027 ntBASIC17.11■□□□□ 0.33
SMARCA1P28370 RMND1-205ENST00000622845 1484 ntTSL 5 BASIC17.11■□□□□ 0.33
SMARCA1P28370 ZBTB32-202ENST00000392197 2068 ntAPPRIS P1 TSL 5 BASIC17.11■□□□□ 0.33
SMARCA1P28370 RGS9-202ENST00000443584 2078 ntTSL 1 (best) BASIC17.11■□□□□ 0.33
SMARCA1P28370 TRIM3-215ENST00000639856 2137 ntTSL 5 BASIC17.11■□□□□ 0.33
SMARCA1P28370 CD48-203ENST00000613788 1500 ntTSL 1 (best) BASIC17.11■□□□□ 0.33
SMARCA1P28370 TM4SF19-203ENST00000446879 1582 ntTSL 1 (best) BASIC17.11■□□□□ 0.33
SMARCA1P28370 LMNB1-201ENST00000261366 2878 ntAPPRIS P1 TSL 1 (best) BASIC17.11■□□□□ 0.33
SMARCA1P28370 TLL1-204ENST00000507499 4818 ntTSL 1 (best) BASIC17.1■□□□□ 0.33
SMARCA1P28370 GIGYF1-201ENST00000275732 6530 ntAPPRIS P1 TSL 1 (best) BASIC17.1■□□□□ 0.33
SMARCA1P28370 WASHC2C-202ENST00000359860 4471 ntAPPRIS ALT2 TSL 5 BASIC17.1■□□□□ 0.33
SMARCA1P28370 CD68-202ENST00000380498 1771 ntAPPRIS ALT2 TSL 1 (best) BASIC17.1■□□□□ 0.33
SMARCA1P28370 KHSRPP1-201ENST00000427983 1768 ntBASIC17.1■□□□□ 0.33
SMARCA1P28370 RGS3-201ENST00000317613 2542 ntTSL 2 BASIC17.1■□□□□ 0.33
SMARCA1P28370 NR4A1-204ENST00000394825 2528 ntAPPRIS P1 TSL 1 (best) BASIC17.1■□□□□ 0.33
SMARCA1P28370 WDR20-205ENST00000424963 2695 ntTSL 5 BASIC17.1■□□□□ 0.33
SMARCA1P28370 EXOG-201ENST00000287675 2792 ntAPPRIS P1 TSL 1 (best) BASIC17.1■□□□□ 0.33
SMARCA1P28370 SERINC2-206ENST00000536859 2072 ntTSL 2 BASIC17.1■□□□□ 0.33
SMARCA1P28370 NTRK3-202ENST00000355254 2938 ntAPPRIS ALT2 TSL 5 BASIC17.1■□□□□ 0.33
SMARCA1P28370 SMS-201ENST00000379404 1174 ntTSL 3 BASIC17.1■□□□□ 0.33
SMARCA1P28370 DYNC1I1-203ENST00000413338 958 ntTSL 2 BASIC17.1■□□□□ 0.33
SMARCA1P28370 SNHG12-210ENST00000483436 682 ntTSL 3 BASIC17.1■□□□□ 0.33
SMARCA1P28370 GTF2H2C-215ENST00000514162 610 ntTSL 5 BASIC17.1■□□□□ 0.33
SMARCA1P28370 C19orf70-204ENST00000587950 655 ntTSL 2 BASIC17.1■□□□□ 0.33
SMARCA1P28370 AC005324.6-201ENST00000587972 613 ntBASIC17.1■□□□□ 0.33
SMARCA1P28370 PRKN-211ENST00000615065 261 ntTSL 5 BASIC17.1■□□□□ 0.33
SMARCA1P28370 MIR6869-201ENST00000619434 62 ntBASIC17.1■□□□□ 0.33
SMARCA1P28370 LINC01672-205ENST00000635092 633 ntTSL 5 BASIC17.1■□□□□ 0.33
SMARCA1P28370 CTNNBIP1-203ENST00000377263 3000 ntAPPRIS P1 TSL 1 (best) BASIC17.1■□□□□ 0.33
SMARCA1P28370 MON2-201ENST00000393629 5612 ntTSL 1 (best) BASIC17.1■□□□□ 0.33
SMARCA1P28370 DNAH14-204ENST00000366849 2215 ntTSL 1 (best) BASIC17.1■□□□□ 0.33
SMARCA1P28370 SP2-201ENST00000376741 3112 ntAPPRIS P1 TSL 1 (best) BASIC17.1■□□□□ 0.33
SMARCA1P28370 TUBGCP2-203ENST00000368563 4218 ntAPPRIS P1 TSL 1 (best) BASIC17.1■□□□□ 0.33
SMARCA1P28370 SUOX-204ENST00000394115 2394 ntAPPRIS P1 TSL 2 BASIC17.1■□□□□ 0.33
SMARCA1P28370 RABEPK-206ENST00000628863 1537 ntTSL 5 BASIC17.1■□□□□ 0.33
SMARCA1P28370 GABRB3-215ENST00000622697 5876 ntTSL 5 BASIC17.1■□□□□ 0.33
SMARCA1P28370 ZNF683-201ENST00000349618 1610 ntAPPRIS P3 TSL 1 (best) BASIC17.1■□□□□ 0.33
SMARCA1P28370 IL12RB2-205ENST00000541374 3849 ntTSL 1 (best) BASIC17.1■□□□□ 0.33
SMARCA1P28370 HCG27-201ENST00000383331 1720 ntTSL 1 (best) BASIC17.1■□□□□ 0.33
SMARCA1P28370 EDEM2-202ENST00000374492 1919 ntAPPRIS P1 TSL 1 (best) BASIC17.09■□□□□ 0.33
SMARCA1P28370 CSRP1-201ENST00000340006 1952 ntAPPRIS P1 TSL 1 (best) BASIC17.09■□□□□ 0.33
SMARCA1P28370 GRB7-203ENST00000394209 1955 ntAPPRIS P1 TSL 2 BASIC17.09■□□□□ 0.33
SMARCA1P28370 ZNF587-203ENST00000423137 1974 ntAPPRIS ALT2 TSL 1 (best) BASIC17.09■□□□□ 0.33
SMARCA1P28370 DCAF5-201ENST00000341516 5953 ntAPPRIS P3 TSL 1 (best) BASIC17.09■□□□□ 0.33
SMARCA1P28370 SENP6-205ENST00000447266 6501 ntAPPRIS ALT2 TSL 1 (best) BASIC17.09■□□□□ 0.33
SMARCA1P28370 MLF1-201ENST00000355893 2203 ntAPPRIS P1 TSL 1 (best) BASIC17.09■□□□□ 0.33
SMARCA1P28370 HDAC5-201ENST00000225983 5326 ntAPPRIS P3 TSL 5 BASIC17.09■□□□□ 0.33
SMARCA1P28370 SERPINA3-203ENST00000467132 2660 ntAPPRIS P1 TSL 2 BASIC17.09■□□□□ 0.33
SMARCA1P28370 NUP93-201ENST00000308159 2741 ntAPPRIS P1 TSL 1 (best) BASIC17.09■□□□□ 0.33
SMARCA1P28370 MFSD13A-201ENST00000238936 2852 ntAPPRIS P1 TSL 5 BASIC17.09■□□□□ 0.33
SMARCA1P28370 ACSS2-202ENST00000360596 3065 ntAPPRIS P1 TSL 1 (best) BASIC17.09■□□□□ 0.33
Retrieved 100 of 98,524 protein–RNA pairs in 45.9 ms