Protein–RNA interactions for Protein: P12111

COL6A3, Collagen alpha-3(VI) chain, humanhuman

Predictions only

Length 3,177 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL6A3P12111 SSBP1-201ENST00000265304 687 ntAPPRIS P1 TSL 1 (best) BASIC15.08■□□□□ 0
COL6A3P12111 AC095040.1-201ENST00000513286 675 ntBASIC15.08■□□□□ 0
COL6A3P12111 HMOX2-213ENST00000575120 1027 ntTSL 3 BASIC15.08■□□□□ 0
COL6A3P12111 CYP1B1-AS1-221ENST00000627172 995 ntTSL 5 BASIC15.08■□□□□ 0
COL6A3P12111 AC003102.2-201ENST00000589195 1469 ntBASIC15.08■□□□□ 0
COL6A3P12111 CHRNA2-201ENST00000240132 1735 ntAPPRIS ALT2 TSL 2 BASIC15.08■□□□□ 0
COL6A3P12111 MOB3A-201ENST00000357066 3391 ntAPPRIS P1 TSL 1 (best) BASIC15.08■□□□□ 0
COL6A3P12111 AL121845.3-201ENST00000490623 3119 ntTSL 5 BASIC15.08■□□□□ 0
COL6A3P12111 IL11-201ENST00000264563 2281 ntAPPRIS P1 TSL 1 (best) BASIC15.08■□□□□ 0
COL6A3P12111 LINC00665-203ENST00000438368 1863 ntTSL 5 BASIC15.08■□□□□ 0
COL6A3P12111 AC237221.1-201ENST00000561575 1881 ntTSL 1 (best) BASIC15.08■□□□□ 0
COL6A3P12111 TRMT44-201ENST00000389737 2799 ntAPPRIS P2 TSL 5 BASIC15.08■□□□□ 0
COL6A3P12111 PLCL2-204ENST00000615277 4147 ntAPPRIS ALT2 TSL 1 (best) BASIC15.08■□□□□ 0
COL6A3P12111 DDX42-202ENST00000389924 3939 ntAPPRIS P1 TSL 5 BASIC15.08■□□□□ 0
COL6A3P12111 ABCB7-201ENST00000253577 2377 ntAPPRIS P3 TSL 1 (best) BASIC15.08■□□□□ 0
COL6A3P12111 C11orf52-201ENST00000278601 1141 ntAPPRIS P1 TSL 1 (best) BASIC15.08■□□□□ 0
COL6A3P12111 AC000077.1-201ENST00000420012 953 ntBASIC15.08■□□□□ 0
COL6A3P12111 RPL18AP16-201ENST00000424057 531 ntBASIC15.08■□□□□ 0
COL6A3P12111 CU639417.1-201ENST00000464664 460 ntAPPRIS P1 BASIC15.08■□□□□ 0
COL6A3P12111 C21orf62-204ENST00000490358 1155 ntAPPRIS P1 TSL 1 (best) BASIC15.08■□□□□ 0
COL6A3P12111 AL512356.1-201ENST00000548203 535 ntTSL 3 BASIC15.08■□□□□ 0
COL6A3P12111 SMAD7-208ENST00000591805 1152 ntTSL 2 BASIC15.08■□□□□ 0
COL6A3P12111 H2BFS-201ENST00000599962 460 ntAPPRIS P1 BASIC15.08■□□□□ 0
COL6A3P12111 Metazoa_SRP.200-201ENST00000622073 282 ntBASIC15.08■□□□□ 0
COL6A3P12111 BCL11A-203ENST00000358510 2697 ntAPPRIS P1 TSL 1 (best) BASIC15.08■□□□□ 0
COL6A3P12111 PSME3-202ENST00000441946 2944 ntTSL 2 BASIC15.07■□□□□ 0
COL6A3P12111 TMEM101-201ENST00000206380 1536 ntAPPRIS P1 TSL 1 (best) BASIC15.07■□□□□ 0
COL6A3P12111 PRSS16-201ENST00000230582 2716 ntAPPRIS P1 TSL 1 (best) BASIC15.07■□□□□ 0
COL6A3P12111 KRT76-201ENST00000332411 2529 ntAPPRIS P1 TSL 1 (best) BASIC15.07■□□□□ 0
COL6A3P12111 METTL22-203ENST00000561758 1312 ntAPPRIS ALT2 TSL 5 BASIC15.07■□□□□ 0
COL6A3P12111 ASB10-201ENST00000275838 1820 ntTSL 1 (best) BASIC15.07■□□□□ 0
COL6A3P12111 TSPAN5-201ENST00000305798 3365 ntAPPRIS P1 TSL 1 (best) BASIC15.07■□□□□ 0
COL6A3P12111 AC093525.2-201ENST00000564543 1944 ntAPPRIS P1 TSL 2 BASIC15.07■□□□□ 0
COL6A3P12111 MCRS1-203ENST00000546244 1686 ntTSL 1 (best) BASIC15.07■□□□□ 0
COL6A3P12111 SLC1A6-210ENST00000600144 1735 ntTSL 1 (best) BASIC15.07■□□□□ 0
COL6A3P12111 DIABLO-206ENST00000443649 2250 ntAPPRIS P1 TSL 2 BASIC15.07■□□□□ 0
COL6A3P12111 OPRM1-201ENST00000229768 1465 ntTSL 1 (best) BASIC15.07■□□□□ 0
COL6A3P12111 OPRM1-207ENST00000428397 1481 ntAPPRIS P3 TSL 1 (best) BASIC15.07■□□□□ 0
COL6A3P12111 HORMAD1-201ENST00000322343 1771 ntTSL 1 (best) BASIC15.07■□□□□ 0
COL6A3P12111 RABL2B-204ENST00000395593 2341 ntAPPRIS ALT2 TSL 1 (best) BASIC15.07■□□□□ 0
COL6A3P12111 IQCA1L-203ENST00000615129 2606 ntAPPRIS P1 TSL 5 BASIC15.07■□□□□ 0
COL6A3P12111 CDK2AP1-205ENST00000542174 1812 ntTSL 2 BASIC15.07■□□□□ 0
COL6A3P12111 AL365181.1-201ENST00000564032 1828 ntBASIC15.07■□□□□ 0
COL6A3P12111 OR7E12P-201ENST00000344740 973 ntBASIC15.07■□□□□ 0
COL6A3P12111 GSTT2-201ENST00000402588 937 ntTSL 1 (best) BASIC15.07■□□□□ 0
COL6A3P12111 AC073869.2-201ENST00000417338 1026 ntBASIC15.07■□□□□ 0
COL6A3P12111 AL139125.1-201ENST00000420395 557 ntTSL 3 BASIC15.07■□□□□ 0
COL6A3P12111 AL590399.1-204ENST00000430302 781 ntTSL 5 BASIC15.07■□□□□ 0
COL6A3P12111 HNRNPA1P10-201ENST00000444945 962 ntBASIC15.07■□□□□ 0
COL6A3P12111 RNU1-80P-201ENST00000459500 161 ntBASIC15.07■□□□□ 0
COL6A3P12111 HNRNPA3P6-201ENST00000472163 1006 ntBASIC15.07■□□□□ 0
COL6A3P12111 AC087442.1-201ENST00000525563 249 ntTSL 2 BASIC15.07■□□□□ 0
COL6A3P12111 AC009120.2-205ENST00000561921 490 ntTSL 3 BASIC15.07■□□□□ 0
COL6A3P12111 MED25-209ENST00000612791 881 ntTSL 5 BASIC15.07■□□□□ 0
COL6A3P12111 CMKLR1-204ENST00000550402 1893 ntAPPRIS ALT2 TSL 1 (best) BASIC15.07■□□□□ 0
COL6A3P12111 ZC3H8-201ENST00000272570 1601 ntAPPRIS ALT2 TSL 1 (best) BASIC15.07■□□□□ 0
COL6A3P12111 SEPT2-245ENST00000616972 3446 ntTSL 2 BASIC15.07■□□□□ 0
COL6A3P12111 HSP90B1-201ENST00000299767 2858 ntAPPRIS P1 TSL 1 (best) BASIC15.07■□□□□ 0
COL6A3P12111 GCK-209ENST00000616242 2260 ntTSL 5 BASIC15.07■□□□□ 0
COL6A3P12111 HSD3B7-201ENST00000262520 2200 ntTSL 2 BASIC15.07■□□□□ 0
COL6A3P12111 INPP5K-204ENST00000421807 2988 ntAPPRIS P1 TSL 1 (best) BASIC15.07■□□□□ 0
COL6A3P12111 KCNQ2-236ENST00000637193 2983 ntTSL 5 BASIC15.07■□□□□ 0
COL6A3P12111 DDOST-206ENST00000602624 1963 ntAPPRIS P1 TSL 1 (best) BASIC15.07■□□□□ 0
COL6A3P12111 FGGY-203ENST00000371212 1640 ntTSL 2 BASIC15.07■□□□□ 0
COL6A3P12111 OR52M2P-201ENST00000414298 959 ntBASIC15.07■□□□□ 0
COL6A3P12111 RIBC1-203ENST00000414955 1281 ntTSL 2 BASIC15.07■□□□□ 0
COL6A3P12111 AL022332.1-202ENST00000432495 426 ntTSL 3 BASIC15.07■□□□□ 0
COL6A3P12111 CNBP-202ENST00000441626 1040 ntTSL 2 BASIC15.07■□□□□ 0
COL6A3P12111 MARK2P17-201ENST00000498560 841 ntBASIC15.07■□□□□ 0
COL6A3P12111 FAM60A-207ENST00000542983 738 ntTSL 4 BASIC15.07■□□□□ 0
COL6A3P12111 AP003170.2-201ENST00000544730 786 ntBASIC15.07■□□□□ 0
COL6A3P12111 SLC13A2-205ENST00000545060 1276 ntTSL 5 BASIC15.07■□□□□ 0
COL6A3P12111 SRP54-AS1-204ENST00000556705 580 ntTSL 2 BASIC15.07■□□□□ 0
COL6A3P12111 GRAMD4P6-201ENST00000556999 244 ntBASIC15.07■□□□□ 0
COL6A3P12111 AC008764.4-207ENST00000600705 956 ntTSL 2 BASIC15.07■□□□□ 0
COL6A3P12111 AC069061.4-201ENST00000581294 1347 ntBASIC15.07■□□□□ 0
COL6A3P12111 ARL8B-208ENST00000611208 2981 ntAPPRIS P1 TSL 1 (best) BASIC15.07■□□□□ 0
COL6A3P12111 UBE2D2-202ENST00000398733 2702 ntAPPRIS P2 TSL 1 (best) BASIC15.07■□□□□ 0
COL6A3P12111 TBC1D3P2-201ENST00000339120 1513 ntTSL 2 BASIC15.06■□□□□ 0
COL6A3P12111 TMPRSS13-203ENST00000524993 1950 ntAPPRIS P3 TSL 1 (best) BASIC15.06■□□□□ 0
COL6A3P12111 TTYH2-206ENST00000529107 2015 ntTSL 2 BASIC15.06■□□□□ 0
COL6A3P12111 LFNG-204ENST00000402045 2058 ntTSL 1 (best) BASIC15.06■□□□□ 0
COL6A3P12111 SEC14L4-204ENST00000381982 1603 ntTSL 1 (best) BASIC15.06■□□□□ 0
COL6A3P12111 RARG-202ENST00000394426 2640 ntTSL 1 (best) BASIC15.06■□□□□ 0
COL6A3P12111 AL354893.2-201ENST00000423075 529 ntTSL 5 BASIC15.06■□□□□ 0
COL6A3P12111 ZNF877P-201ENST00000437614 612 ntBASIC15.06■□□□□ 0
COL6A3P12111 CICP12-201ENST00000455801 843 ntBASIC15.06■□□□□ 0
COL6A3P12111 AC139887.2-201ENST00000503571 531 ntTSL 4 BASIC15.06■□□□□ 0
COL6A3P12111 NACA-221ENST00000552540 1074 ntAPPRIS P1 TSL 1 (best) BASIC15.06■□□□□ 0
COL6A3P12111 AC009163.3-201ENST00000563554 852 ntTSL 3 BASIC15.06■□□□□ 0
COL6A3P12111 TIMM23-201ENST00000580018 1222 ntAPPRIS P1 TSL 1 (best) BASIC15.06■□□□□ 0
COL6A3P12111 GAS7-216ENST00000583882 553 ntTSL 5 BASIC15.06■□□□□ 0
COL6A3P12111 FAM69A-204ENST00000615519 865 ntTSL 1 (best) BASIC15.06■□□□□ 0
COL6A3P12111 SNHG5-213ENST00000622963 753 ntTSL 5 BASIC15.06■□□□□ 0
COL6A3P12111 MOCS1-206ENST00000425303 1920 ntTSL 2 BASIC15.06■□□□□ 0
COL6A3P12111 KLF10-201ENST00000285407 3097 ntAPPRIS P1 TSL 1 (best) BASIC15.06■□□□□ 0
COL6A3P12111 SAMD11-202ENST00000342066 2551 ntAPPRIS P2 TSL 5 BASIC15.06■□□□□ 0
COL6A3P12111 ZCCHC17-201ENST00000344147 1605 ntAPPRIS P1 TSL 1 (best) BASIC15.06■□□□□ 0
COL6A3P12111 AC026471.1-201ENST00000564629 3026 ntBASIC15.06■□□□□ 0
COL6A3P12111 LPCAT4-209ENST00000617710 1719 ntTSL 5 BASIC15.06■□□□□ 0
Retrieved 100 of 98,524 protein–RNA pairs in 63.1 ms