Protein–RNA interactions for Protein: P09429

HMGB1, High mobility group protein B1, humanhuman

Known RBP Predictions only

Length 215 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HMGB1P09429 RBPJ-205ENST00000355476 5990 ntAPPRIS P3 TSL 1 (best) BASIC17.7■□□□□ 0.42
HMGB1P09429 GAL-201ENST00000265643 818 ntAPPRIS P1 TSL 1 (best) BASIC17.7■□□□□ 0.42
HMGB1P09429 NCR3-201ENST00000340027 1042 ntAPPRIS P3 TSL 1 (best) BASIC17.7■□□□□ 0.42
HMGB1P09429 SNCA-205ENST00000394991 1290 ntAPPRIS P1 TSL 1 (best) BASIC17.7■□□□□ 0.42
HMGB1P09429 AC104135.1-201ENST00000418001 763 ntTSL 5 BASIC17.7■□□□□ 0.42
HMGB1P09429 AC084864.1-201ENST00000496217 305 ntTSL 3 BASIC17.7■□□□□ 0.42
HMGB1P09429 CLRN2-201ENST00000511148 823 ntAPPRIS P1 TSL 1 (best) BASIC17.7■□□□□ 0.42
HMGB1P09429 AC131206.1-201ENST00000538078 1211 ntBASIC17.7■□□□□ 0.42
HMGB1P09429 JKAMP-207ENST00000554271 2137 ntTSL 2 BASIC17.7■□□□□ 0.42
HMGB1P09429 AL596325.1-201ENST00000563991 1082 ntBASIC17.7■□□□□ 0.42
HMGB1P09429 AC138696.2-201ENST00000607376 223 ntBASIC17.7■□□□□ 0.42
HMGB1P09429 OR2I1P-210ENST00000642037 4691 ntBASIC17.7■□□□□ 0.42
HMGB1P09429 SLC38A10-202ENST00000374759 4300 ntAPPRIS ALT2 TSL 5 BASIC17.7■□□□□ 0.42
HMGB1P09429 UBXN2B-201ENST00000399598 5068 ntAPPRIS P1 TSL 1 (best) BASIC17.7■□□□□ 0.42
HMGB1P09429 GPSM1-205ENST00000440944 3633 ntAPPRIS P2 TSL 5 BASIC17.7■□□□□ 0.42
HMGB1P09429 AKAP12-201ENST00000253332 6597 ntAPPRIS P4 TSL 1 (best) BASIC17.7■□□□□ 0.42
HMGB1P09429 MIR600HG-201ENST00000449175 5984 ntBASIC17.7■□□□□ 0.42
HMGB1P09429 WDTC1-202ENST00000361771 4275 ntAPPRIS P3 TSL 1 (best) BASIC17.7■□□□□ 0.42
HMGB1P09429 CU639417.3-201ENST00000624240 1404 ntBASIC17.7■□□□□ 0.42
HMGB1P09429 SLC6A20-204ENST00000456124 2662 ntTSL 1 (best) BASIC17.7■□□□□ 0.42
HMGB1P09429 ZFAND4-203ENST00000374366 3821 ntTSL 1 (best) BASIC17.7■□□□□ 0.42
HMGB1P09429 HBP1-201ENST00000222574 2829 ntAPPRIS P1 TSL 1 (best) BASIC17.7■□□□□ 0.42
HMGB1P09429 CAPN5-202ENST00000456580 2805 ntTSL 2 BASIC17.7■□□□□ 0.42
HMGB1P09429 SEPT9-244ENST00000592420 2588 ntTSL 2 BASIC17.7■□□□□ 0.42
HMGB1P09429 MAPT-206ENST00000415613 2331 ntAPPRIS ALT2 TSL 5 BASIC17.7■□□□□ 0.42
HMGB1P09429 PRSS54-201ENST00000219301 1810 ntAPPRIS P1 TSL 5 BASIC17.7■□□□□ 0.42
HMGB1P09429 NUP54-217ENST00000514987 1563 ntTSL 2 BASIC17.7■□□□□ 0.42
HMGB1P09429 CLUHP2-201ENST00000426660 1303 ntBASIC17.7■□□□□ 0.42
HMGB1P09429 ITSN1-204ENST00000381285 6107 ntTSL 5 BASIC17.7■□□□□ 0.42
HMGB1P09429 TRAPPC8-210ENST00000582513 3205 ntTSL 1 (best) BASIC17.7■□□□□ 0.42
HMGB1P09429 AC126755.1-201ENST00000525846 6405 ntBASIC17.7■□□□□ 0.42
HMGB1P09429 SCYL1-201ENST00000270176 2642 ntAPPRIS P1 TSL 1 (best) BASIC17.69■□□□□ 0.42
HMGB1P09429 RMND1-202ENST00000367303 1854 ntAPPRIS P1 TSL 1 (best) BASIC17.69■□□□□ 0.42
HMGB1P09429 ZNF628-203ENST00000598519 3847 ntAPPRIS P2 TSL 1 (best) BASIC17.69■□□□□ 0.42
HMGB1P09429 LINC01285-201ENST00000412422 2289 ntTSL 2 BASIC17.69■□□□□ 0.42
HMGB1P09429 MSTO1-201ENST00000245564 2431 ntAPPRIS P1 TSL 1 (best) BASIC17.69■□□□□ 0.42
HMGB1P09429 DMTN-206ENST00000443491 2415 ntAPPRIS P1 TSL 5 BASIC17.69■□□□□ 0.42
HMGB1P09429 DEPDC7-201ENST00000241051 1755 ntAPPRIS P1 TSL 1 (best) BASIC17.69■□□□□ 0.42
HMGB1P09429 AAMP-202ENST00000420660 1761 ntTSL 2 BASIC17.69■□□□□ 0.42
HMGB1P09429 BRD2-202ENST00000374831 4807 ntAPPRIS P3 TSL 1 (best) BASIC17.69■□□□□ 0.42
HMGB1P09429 BX640514.1-201ENST00000583223 1918 ntBASIC17.69■□□□□ 0.42
HMGB1P09429 SUCO-204ENST00000608151 5790 ntTSL 5 BASIC17.69■□□□□ 0.42
HMGB1P09429 PMM2-201ENST00000268261 2313 ntAPPRIS P1 TSL 1 (best) BASIC17.69■□□□□ 0.42
HMGB1P09429 SLC24A3-201ENST00000328041 3929 ntAPPRIS P1 TSL 1 (best) BASIC17.69■□□□□ 0.42
HMGB1P09429 STUM-202ENST00000366789 4093 ntAPPRIS ALT1 TSL 5 BASIC17.69■□□□□ 0.42
HMGB1P09429 ZFP41-203ENST00000520584 3284 ntAPPRIS P1 TSL 1 (best) BASIC17.69■□□□□ 0.42
HMGB1P09429 SYTL3-205ENST00000611299 2896 ntAPPRIS ALT1 TSL 5 BASIC17.69■□□□□ 0.42
HMGB1P09429 IL32-202ENST00000325568 1105 ntAPPRIS P4 TSL 1 (best) BASIC17.69■□□□□ 0.42
HMGB1P09429 GUK1-206ENST00000366723 845 ntTSL 5 BASIC17.69■□□□□ 0.42
HMGB1P09429 WDR38-201ENST00000373574 1252 ntAPPRIS P3 TSL 1 (best) BASIC17.69■□□□□ 0.42
HMGB1P09429 EIF1AX-201ENST00000379593 765 ntTSL 3 BASIC17.69■□□□□ 0.42
HMGB1P09429 IL32-203ENST00000382213 880 ntAPPRIS ALT2 TSL 3 BASIC17.69■□□□□ 0.42
HMGB1P09429 CYB5R3-203ENST00000402438 1050 ntTSL 5 BASIC17.69■□□□□ 0.42
HMGB1P09429 NGDN-202ENST00000408901 1143 ntAPPRIS ALT2 TSL 1 (best) BASIC17.69■□□□□ 0.42
HMGB1P09429 PTPA-220ENST00000436883 532 ntTSL 4 BASIC17.69■□□□□ 0.42
HMGB1P09429 AC073130.2-202ENST00000444244 842 ntTSL 3 BASIC17.69■□□□□ 0.42
HMGB1P09429 AC139713.2-206ENST00000499587 566 ntTSL 4 BASIC17.69■□□□□ 0.42
HMGB1P09429 FUZ-207ENST00000526575 482 ntTSL 4 BASIC17.69■□□□□ 0.42
HMGB1P09429 SLC8B1-206ENST00000549069 1058 ntTSL 2 BASIC17.69■□□□□ 0.42
HMGB1P09429 VPS18-202ENST00000558474 873 ntTSL 3 BASIC17.69■□□□□ 0.42
HMGB1P09429 FXYD6-216ENST00000584230 566 ntAPPRIS ALT1 TSL 3 BASIC17.69■□□□□ 0.42
HMGB1P09429 CCL5-202ENST00000605140 1244 ntAPPRIS P1 TSL 5 BASIC17.69■□□□□ 0.42
HMGB1P09429 AC092135.3-201ENST00000624151 1846 ntBASIC17.69■□□□□ 0.42
HMGB1P09429 GRK6-203ENST00000393576 2792 ntTSL 5 BASIC17.69■□□□□ 0.42
HMGB1P09429 DLGAP1-213ENST00000534970 2365 ntTSL 2 BASIC17.69■□□□□ 0.42
HMGB1P09429 LATS2-201ENST00000382592 5511 ntAPPRIS P1 TSL 1 (best) BASIC17.69■□□□□ 0.42
HMGB1P09429 ALDH8A1-204ENST00000367847 1587 ntTSL 2 BASIC17.69■□□□□ 0.42
HMGB1P09429 RPARP-AS1-202ENST00000492465 1556 ntTSL 1 (best) BASIC17.69■□□□□ 0.42
HMGB1P09429 MVK-214ENST00000629016 1591 ntTSL 5 BASIC17.69■□□□□ 0.42
HMGB1P09429 ZNF777-201ENST00000247930 3233 ntAPPRIS P1 TSL 1 (best) BASIC17.69■□□□□ 0.42
HMGB1P09429 TACR3-201ENST00000304883 5190 ntAPPRIS P1 TSL 1 (best) BASIC17.69■□□□□ 0.42
HMGB1P09429 KCNMA1-219ENST00000480683 2963 ntTSL 1 (best) BASIC17.69■□□□□ 0.42
HMGB1P09429 COL5A1-201ENST00000371817 8471 ntAPPRIS P3 TSL 1 (best) BASIC17.69■□□□□ 0.42
HMGB1P09429 VWA7-201ENST00000375688 2881 ntAPPRIS P1 TSL 5 BASIC17.69■□□□□ 0.42
HMGB1P09429 AVL9-201ENST00000318709 6982 ntAPPRIS P1 TSL 2 BASIC17.69■□□□□ 0.42
HMGB1P09429 HCRTR1-202ENST00000373706 1642 ntAPPRIS P1 TSL 1 (best) BASIC17.69■□□□□ 0.42
HMGB1P09429 AC006262.1-203ENST00000598170 1634 ntTSL 1 (best) BASIC17.69■□□□□ 0.42
HMGB1P09429 TP73-213ENST00000604479 1623 ntTSL 5 BASIC17.69■□□□□ 0.42
HMGB1P09429 DCUN1D2-201ENST00000332592 2626 ntTSL 2 BASIC17.68■□□□□ 0.42
HMGB1P09429 LPAR1-203ENST00000374431 3637 ntAPPRIS P2 TSL 1 (best) BASIC17.68■□□□□ 0.42
HMGB1P09429 PIK3CD-206ENST00000536656 5483 ntTSL 5 BASIC17.68■□□□□ 0.42
HMGB1P09429 PIK3CD-208ENST00000628140 5483 ntTSL 5 BASIC17.68■□□□□ 0.42
HMGB1P09429 STIP1-207ENST00000538945 1900 ntTSL 2 BASIC17.68■□□□□ 0.42
HMGB1P09429 TSFM-207ENST00000540550 1935 ntTSL 2 BASIC17.68■□□□□ 0.42
HMGB1P09429 SLC35E2-202ENST00000355439 2078 ntAPPRIS ALT2 TSL 1 (best) BASIC17.68■□□□□ 0.42
HMGB1P09429 AC004754.1-201ENST00000600536 2242 ntAPPRIS P1 TSL 5 BASIC17.68■□□□□ 0.42
HMGB1P09429 IFNAR1-201ENST00000270139 6139 ntAPPRIS P1 TSL 1 (best) BASIC17.68■□□□□ 0.42
HMGB1P09429 COCH-202ENST00000396618 2536 ntAPPRIS P1 TSL 1 (best) BASIC17.68■□□□□ 0.42
HMGB1P09429 SAP130-201ENST00000259234 4140 ntAPPRIS P1 TSL 5 BASIC17.68■□□□□ 0.42
HMGB1P09429 PRR19-201ENST00000341747 1530 ntAPPRIS P2 TSL 5 BASIC17.68■□□□□ 0.42
HMGB1P09429 CTCFL-210ENST00000481655 1512 ntTSL 1 (best) BASIC17.68■□□□□ 0.42
HMGB1P09429 UHRF1BP1-202ENST00000452449 4706 ntAPPRIS ALT2 TSL 5 BASIC17.68■□□□□ 0.42
HMGB1P09429 PATZ1-204ENST00000405309 3711 ntTSL 1 (best) BASIC17.68■□□□□ 0.42
HMGB1P09429 BARHL2-201ENST00000370445 1979 ntAPPRIS P1 TSL 1 (best) BASIC17.68■□□□□ 0.42
HMGB1P09429 VAT1-201ENST00000355653 2734 ntAPPRIS P1 TSL 1 (best) BASIC17.68■□□□□ 0.42
HMGB1P09429 MIIP-201ENST00000235332 1573 ntAPPRIS P1 TSL 1 (best) BASIC17.68■□□□□ 0.42
HMGB1P09429 SLC35G3-201ENST00000297307 2004 ntAPPRIS P1 BASIC17.68■□□□□ 0.42
HMGB1P09429 VCX2-201ENST00000317103 815 ntAPPRIS P1 TSL 1 (best) BASIC17.68■□□□□ 0.42
HMGB1P09429 PRKN-201ENST00000338468 1276 ntTSL 1 (best) BASIC17.68■□□□□ 0.42
HMGB1P09429 S100A16-201ENST00000368703 946 ntAPPRIS P1 TSL 3 BASIC17.68■□□□□ 0.42
Retrieved 100 of 98,524 protein–RNA pairs in 69.1 ms