Protein–RNA interactions for Protein: O00635

TRIM38, E3 ubiquitin-protein ligase TRIM38, humanhuman

Predictions only

Length 465 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM38O00635 AL354718.3-201ENST00000616414 581 ntBASIC15.2■□□□□ 0.02
TRIM38O00635 CR382287.1-201ENST00000623954 586 ntBASIC15.2■□□□□ 0.02
TRIM38O00635 DIS3-202ENST00000377780 5232 ntTSL 1 (best) BASIC15.2■□□□□ 0.02
TRIM38O00635 SMYD3-214ENST00000490107 1548 ntAPPRIS P1 TSL 1 (best) BASIC15.2■□□□□ 0.02
TRIM38O00635 SPATC1-202ENST00000447830 1795 ntAPPRIS ALT2 TSL 1 (best) BASIC15.2■□□□□ 0.02
TRIM38O00635 ALOX12B-201ENST00000319144 2502 ntAPPRIS P1 TSL 1 (best) BASIC15.2■□□□□ 0.02
TRIM38O00635 TMEM41B-204ENST00000528080 3968 ntAPPRIS P1 TSL 1 (best) BASIC15.2■□□□□ 0.02
TRIM38O00635 KCNT1-207ENST00000487664 3845 ntAPPRIS ALT2 TSL 5 BASIC15.2■□□□□ 0.02
TRIM38O00635 MAPK7-204ENST00000395604 3077 ntAPPRIS P1 TSL 1 (best) BASIC15.2■□□□□ 0.02
TRIM38O00635 CD209-207ENST00000593660 1497 ntAPPRIS ALT2 TSL 1 (best) BASIC15.2■□□□□ 0.02
TRIM38O00635 SHROOM2-201ENST00000380913 7447 ntAPPRIS P1 TSL 1 (best) BASIC15.2■□□□□ 0.02
TRIM38O00635 AC127383.1-201ENST00000444697 1800 ntBASIC15.2■□□□□ 0.02
TRIM38O00635 WSCD1-201ENST00000317744 5819 ntAPPRIS P1 TSL 1 (best) BASIC15.19■□□□□ 0.02
TRIM38O00635 HNRNPDL-208ENST00000621267 4139 ntAPPRIS P2 TSL 1 (best) BASIC15.19■□□□□ 0.02
TRIM38O00635 AC097376.2-205ENST00000610159 5334 ntBASIC15.19■□□□□ 0.02
TRIM38O00635 CHST10-203ENST00000409701 1338 ntAPPRIS P1 TSL 1 (best) BASIC15.19■□□□□ 0.02
TRIM38O00635 KCNC1-201ENST00000265969 4295 ntAPPRIS P1 TSL 5 BASIC15.19■□□□□ 0.02
TRIM38O00635 MLKL-201ENST00000306247 1781 ntTSL 1 (best) BASIC15.19■□□□□ 0.02
TRIM38O00635 FAM214B-202ENST00000378557 3070 ntAPPRIS P1 TSL 1 (best) BASIC15.19■□□□□ 0.02
TRIM38O00635 KRAS-202ENST00000311936 5765 ntAPPRIS ALT1 TSL 1 (best) BASIC15.19■□□□□ 0.02
TRIM38O00635 CHN2-201ENST00000222792 3530 ntAPPRIS P1 TSL 1 (best) BASIC15.19■□□□□ 0.02
TRIM38O00635 PPP2R1B-203ENST00000393055 1525 ntTSL 2 BASIC15.19■□□□□ 0.02
TRIM38O00635 SLC52A3-205ENST00000632431 2694 ntAPPRIS P1 TSL 1 (best) BASIC15.19■□□□□ 0.02
TRIM38O00635 AC023024.2-201ENST00000623561 1993 ntBASIC15.19■□□□□ 0.02
TRIM38O00635 CGB5-201ENST00000301408 841 ntAPPRIS P1 TSL 1 (best) BASIC15.19■□□□□ 0.02
TRIM38O00635 GTSF1-201ENST00000305879 804 ntAPPRIS P1 TSL 1 (best) BASIC15.19■□□□□ 0.02
TRIM38O00635 PDGFB-202ENST00000381551 1125 ntTSL 5 BASIC15.19■□□□□ 0.02
TRIM38O00635 BCYRN1-201ENST00000418539 200 ntBASIC15.19■□□□□ 0.02
TRIM38O00635 RFPL4A-201ENST00000434937 1035 ntAPPRIS P1 TSL 5 BASIC15.19■□□□□ 0.02
TRIM38O00635 AC008808.1-201ENST00000508923 432 ntTSL 3 BASIC15.19■□□□□ 0.02
TRIM38O00635 AC080188.2-201ENST00000508985 552 ntTSL 4 BASIC15.19■□□□□ 0.02
TRIM38O00635 AC126768.2-201ENST00000511693 718 ntTSL 3 BASIC15.19■□□□□ 0.02
TRIM38O00635 SNHG9-201ENST00000531523 275 ntTSL 1 (best) BASIC15.19■□□□□ 0.02
TRIM38O00635 AC125603.2-201ENST00000546835 876 ntTSL 3 BASIC15.19■□□□□ 0.02
TRIM38O00635 DYNLRB2-205ENST00000568035 409 ntTSL 5 BASIC15.19■□□□□ 0.02
TRIM38O00635 MIR22HG-212ENST00000577164 931 ntTSL 4 BASIC15.19■□□□□ 0.02
TRIM38O00635 KSR1-207ENST00000578981 748 ntTSL 4 BASIC15.19■□□□□ 0.02
TRIM38O00635 AC008687.7-202ENST00000637404 953 ntBASIC15.19■□□□□ 0.02
TRIM38O00635 SGK3-211ENST00000522398 3106 ntAPPRIS P1 TSL 5 BASIC15.19■□□□□ 0.02
TRIM38O00635 HNF4G-201ENST00000354370 1728 ntAPPRIS ALT2 TSL 1 (best) BASIC15.19■□□□□ 0.02
TRIM38O00635 MBD1-212ENST00000585672 2532 ntTSL 1 (best) BASIC15.19■□□□□ 0.02
TRIM38O00635 STAM-202ENST00000377524 2972 ntAPPRIS P1 TSL 1 (best) BASIC15.19■□□□□ 0.02
TRIM38O00635 ZFPM2-206ENST00000520492 3960 ntTSL 2 BASIC15.19■□□□□ 0.02
TRIM38O00635 PPP1R16A-201ENST00000292539 2722 ntAPPRIS P1 TSL 2 BASIC15.19■□□□□ 0.02
TRIM38O00635 FLII-221ENST00000578558 2377 ntTSL 5 BASIC15.19■□□□□ 0.02
TRIM38O00635 MYH6-201ENST00000356287 5871 ntAPPRIS P1 TSL 1 (best) BASIC15.19■□□□□ 0.02
TRIM38O00635 TIFA-201ENST00000361717 4157 ntAPPRIS P1 TSL 1 (best) BASIC15.19■□□□□ 0.02
TRIM38O00635 SLC22A15-202ENST00000369503 4720 ntAPPRIS P1 TSL 1 (best) BASIC15.19■□□□□ 0.02
TRIM38O00635 TK1-203ENST00000588734 1681 ntTSL 2 BASIC15.19■□□□□ 0.02
TRIM38O00635 AEN-201ENST00000332810 3117 ntAPPRIS P1 TSL 1 (best) BASIC15.19■□□□□ 0.02
TRIM38O00635 CSDC2-201ENST00000306149 2777 ntAPPRIS P1 TSL 1 (best) BASIC15.19■□□□□ 0.02
TRIM38O00635 TMCC2-202ENST00000330675 2780 ntTSL 1 (best) BASIC15.19■□□□□ 0.02
TRIM38O00635 EIF4A1-201ENST00000293831 1756 ntAPPRIS P1 TSL 1 (best) BASIC15.19■□□□□ 0.02
TRIM38O00635 GPR137C-201ENST00000321662 3888 ntAPPRIS P1 TSL 1 (best) BASIC15.18■□□□□ 0.02
TRIM38O00635 GREB1-205ENST00000389825 1315 ntTSL 1 (best) BASIC15.18■□□□□ 0.02
TRIM38O00635 AC099850.1-201ENST00000451775 1338 ntTSL 2 BASIC15.18■□□□□ 0.02
TRIM38O00635 B4GALNT3-201ENST00000266383 5068 ntAPPRIS P1 TSL 1 (best) BASIC15.18■□□□□ 0.02
TRIM38O00635 FAM118B-210ENST00000627851 1862 ntTSL 5 BASIC15.18■□□□□ 0.02
TRIM38O00635 BANP-203ENST00000393207 2438 ntTSL 2 BASIC15.18■□□□□ 0.02
TRIM38O00635 CRYBG2-210ENST00000527815 2523 ntAPPRIS ALT2 TSL 2 BASIC15.18■□□□□ 0.02
TRIM38O00635 CHEK2-204ENST00000382580 1971 ntAPPRIS ALT2 TSL 1 (best) BASIC15.18■□□□□ 0.02
TRIM38O00635 C12orf73-207ENST00000549478 1446 ntAPPRIS P1 TSL 1 (best) BASIC15.18■□□□□ 0.02
TRIM38O00635 KAT8-201ENST00000219797 1525 ntAPPRIS P1 TSL 1 (best) BASIC15.18■□□□□ 0.02
TRIM38O00635 TEKT4-201ENST00000295201 1505 ntAPPRIS P1 TSL 1 (best) BASIC15.18■□□□□ 0.02
TRIM38O00635 ZNF575-202ENST00000458714 2285 ntTSL 2 BASIC15.18■□□□□ 0.02
TRIM38O00635 RPTOR-203ENST00000570891 2286 ntTSL 1 (best) BASIC15.18■□□□□ 0.02
TRIM38O00635 PDE7A-203ENST00000401827 3673 ntAPPRIS ALT1 TSL 1 (best) BASIC15.18■□□□□ 0.02
TRIM38O00635 PHTF1-202ENST00000369598 3000 ntTSL 5 BASIC15.18■□□□□ 0.02
TRIM38O00635 TOMM70-201ENST00000284320 4409 ntAPPRIS P1 TSL 1 (best) BASIC15.18■□□□□ 0.02
TRIM38O00635 RNASEH2B-202ENST00000422660 4830 ntTSL 5 BASIC15.18■□□□□ 0.02
TRIM38O00635 WRAP53-202ENST00000396463 1905 ntAPPRIS P1 TSL 1 (best) BASIC15.18■□□□□ 0.02
TRIM38O00635 SPEG-201ENST00000312358 10782 ntAPPRIS P1 TSL 5 BASIC15.18■□□□□ 0.02
TRIM38O00635 TAF15-205ENST00000603777 2011 ntAPPRIS ALT2 TSL 5 BASIC15.18■□□□□ 0.02
TRIM38O00635 GSPT1-202ENST00000434724 7105 ntAPPRIS P4 TSL 1 (best) BASIC15.18■□□□□ 0.02
TRIM38O00635 CCDC88B-201ENST00000301897 870 ntTSL 1 (best) BASIC15.18■□□□□ 0.02
TRIM38O00635 TPO-206ENST00000382269 1155 ntTSL 5 BASIC15.18■□□□□ 0.02
TRIM38O00635 LATS2-201ENST00000382592 5511 ntAPPRIS P1 TSL 1 (best) BASIC15.18■□□□□ 0.02
TRIM38O00635 BLVRA-202ENST00000402924 1161 ntAPPRIS P1 TSL 2 BASIC15.18■□□□□ 0.02
TRIM38O00635 HTR3E-202ENST00000415389 2139 ntAPPRIS ALT2 TSL 1 (best) BASIC15.18■□□□□ 0.02
TRIM38O00635 CNN2P8-201ENST00000421872 913 ntBASIC15.18■□□□□ 0.02
TRIM38O00635 DRGX-202ENST00000434016 955 ntAPPRIS P1 TSL 5 BASIC15.18■□□□□ 0.02
TRIM38O00635 LINC01248-201ENST00000458264 468 ntTSL 3 BASIC15.18■□□□□ 0.02
TRIM38O00635 PCBP4-205ENST00000461554 2147 ntAPPRIS P1 TSL 1 (best) BASIC15.18■□□□□ 0.02
TRIM38O00635 PAFAH1B3-202ENST00000538771 1098 ntAPPRIS P1 TSL 2 BASIC15.18■□□□□ 0.02
TRIM38O00635 RIT1-205ENST00000539040 919 ntTSL 2 BASIC15.18■□□□□ 0.02
TRIM38O00635 AL583722.2-201ENST00000557223 663 ntTSL 3 BASIC15.18■□□□□ 0.02
TRIM38O00635 TRAPPC2L-206ENST00000564365 1060 ntTSL 1 (best) BASIC15.18■□□□□ 0.02
TRIM38O00635 DERL2-202ENST00000570848 657 ntTSL 5 BASIC15.18■□□□□ 0.02
TRIM38O00635 RN7SL560P-201ENST00000577943 264 ntBASIC15.18■□□□□ 0.02
TRIM38O00635 AC015910.1-201ENST00000579400 975 ntBASIC15.18■□□□□ 0.02
TRIM38O00635 AC103810.3-201ENST00000583567 96 ntBASIC15.18■□□□□ 0.02
TRIM38O00635 EBAG9-209ENST00000614147 1179 ntTSL 5 BASIC15.18■□□□□ 0.02
TRIM38O00635 LARP4-220ENST00000615080 856 ntTSL 5 BASIC15.18■□□□□ 0.02
TRIM38O00635 AC233723.1-201ENST00000635921 386 ntAPPRIS P1 TSL 5 BASIC15.18■□□□□ 0.02
TRIM38O00635 ITSN1-204ENST00000381285 6107 ntTSL 5 BASIC15.18■□□□□ 0.02
TRIM38O00635 PRDM6-201ENST00000407847 9267 ntAPPRIS P1 TSL 5 BASIC15.18■□□□□ 0.02
TRIM38O00635 PDGFB-201ENST00000331163 3497 ntAPPRIS P1 TSL 1 (best) BASIC15.18■□□□□ 0.02
TRIM38O00635 BTBD11-204ENST00000420571 3478 ntTSL 5 BASIC15.18■□□□□ 0.02
TRIM38O00635 SCLY-202ENST00000409736 1774 ntTSL 1 (best) BASIC15.18■□□□□ 0.02
TRIM38O00635 CTBP1-AS2-205ENST00000578730 2757 ntTSL 2 BASIC15.18■□□□□ 0.02
Retrieved 100 of 98,524 protein–RNA pairs in 29.7 ms