Protein–RNA interactions for Protein: Q9UPM8

AP4E1, AP-4 complex subunit epsilon-1, humanhuman

Predictions only

Length 1,137 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
AP4E1Q9UPM8 AC132938.2-201ENST00000579188 680 ntBASIC15.62■□□□□ 0.09
AP4E1Q9UPM8 COX6B1-204ENST00000592141 660 ntAPPRIS P1 TSL 3 BASIC15.62■□□□□ 0.09
AP4E1Q9UPM8 AC015936.2-201ENST00000593177 259 ntBASIC15.62■□□□□ 0.09
AP4E1Q9UPM8 CECR7-204ENST00000609932 568 ntTSL 2 BASIC15.62■□□□□ 0.09
AP4E1Q9UPM8 PDLIM3-213ENST00000629667 1016 ntTSL 5 BASIC15.62■□□□□ 0.09
AP4E1Q9UPM8 AL591163.1-201ENST00000641757 987 ntBASIC15.62■□□□□ 0.09
AP4E1Q9UPM8 IL32-201ENST00000008180 1056 ntAPPRIS ALT2 TSL 2 BASIC15.62■□□□□ 0.09
AP4E1Q9UPM8 RPP40-202ENST00000380051 1483 ntAPPRIS P1 TSL 5 BASIC15.62■□□□□ 0.09
AP4E1Q9UPM8 NEK2-201ENST00000366998 1865 ntTSL 1 (best) BASIC15.62■□□□□ 0.09
AP4E1Q9UPM8 CFLAR-204ENST00000341582 2056 ntAPPRIS ALT2 TSL 1 (best) BASIC15.62■□□□□ 0.09
AP4E1Q9UPM8 SLC29A1-204ENST00000371731 2258 ntAPPRIS P1 TSL 5 BASIC15.62■□□□□ 0.09
AP4E1Q9UPM8 RBBP8-201ENST00000327155 3288 ntAPPRIS P1 TSL 1 (best) BASIC15.62■□□□□ 0.09
AP4E1Q9UPM8 ANKRD46-205ENST00000520311 3270 ntAPPRIS P1 TSL 2 BASIC15.62■□□□□ 0.09
AP4E1Q9UPM8 AMPD2-218ENST00000528454 2728 ntTSL 2 BASIC15.62■□□□□ 0.09
AP4E1Q9UPM8 ANO1-201ENST00000316296 2118 ntTSL 2 BASIC15.62■□□□□ 0.09
AP4E1Q9UPM8 GPANK1-203ENST00000375896 1910 ntAPPRIS P1 TSL 1 (best) BASIC15.62■□□□□ 0.09
AP4E1Q9UPM8 PPP2R1B-203ENST00000393055 1525 ntTSL 2 BASIC15.62■□□□□ 0.09
AP4E1Q9UPM8 ZNF84-202ENST00000392319 7020 ntAPPRIS P2 TSL 1 (best) BASIC15.62■□□□□ 0.09
AP4E1Q9UPM8 COMT-205ENST00000406520 1339 ntAPPRIS P3 TSL 1 (best) BASIC15.62■□□□□ 0.09
AP4E1Q9UPM8 PNMA1-201ENST00000316836 2590 ntAPPRIS P1 BASIC15.62■□□□□ 0.09
AP4E1Q9UPM8 TPD52-201ENST00000379096 4041 ntAPPRIS ALT1 TSL 1 (best) BASIC15.62■□□□□ 0.09
AP4E1Q9UPM8 OR2I1P-209ENST00000641730 5365 ntBASIC15.62■□□□□ 0.09
AP4E1Q9UPM8 ARHGEF16-201ENST00000378371 2219 ntTSL 1 (best) BASIC15.62■□□□□ 0.09
AP4E1Q9UPM8 UBE4B-201ENST00000253251 4772 ntAPPRIS P1 TSL 1 (best) BASIC15.62■□□□□ 0.09
AP4E1Q9UPM8 TRAF7-201ENST00000326181 3700 ntAPPRIS P1 TSL 1 (best) BASIC15.61■□□□□ 0.09
AP4E1Q9UPM8 SCAMP2-201ENST00000268099 2453 ntAPPRIS P1 TSL 1 (best) BASIC15.61■□□□□ 0.09
AP4E1Q9UPM8 ZNF557-201ENST00000252840 2268 ntAPPRIS P3 TSL 1 (best) BASIC15.61■□□□□ 0.09
AP4E1Q9UPM8 GCK-204ENST00000403799 2729 ntAPPRIS P1 TSL 1 (best) BASIC15.61■□□□□ 0.09
AP4E1Q9UPM8 TBC1D8-202ENST00000409318 3803 ntTSL 5 BASIC15.61■□□□□ 0.09
AP4E1Q9UPM8 GLG1-203ENST00000447066 3626 ntAPPRIS ALT2 TSL 2 BASIC15.61■□□□□ 0.09
AP4E1Q9UPM8 KCNT1-211ENST00000491806 3678 ntAPPRIS ALT2 TSL 5 BASIC15.61■□□□□ 0.09
AP4E1Q9UPM8 AL354714.1-201ENST00000356006 2136 ntTSL 1 (best) BASIC15.61■□□□□ 0.09
AP4E1Q9UPM8 ADD1-204ENST00000398123 2361 ntTSL 1 (best) BASIC15.61■□□□□ 0.09
AP4E1Q9UPM8 ARMC8-220ENST00000489213 1714 ntTSL 5 BASIC15.61■□□□□ 0.09
AP4E1Q9UPM8 TBP-206ENST00000540980 1701 ntAPPRIS ALT2 TSL 2 BASIC15.61■□□□□ 0.09
AP4E1Q9UPM8 CMA1-202ENST00000250378 937 ntAPPRIS P1 TSL 1 (best) BASIC15.61■□□□□ 0.09
AP4E1Q9UPM8 UEVLD-201ENST00000300038 995 ntTSL 1 (best) BASIC15.61■□□□□ 0.09
AP4E1Q9UPM8 TOMM5-201ENST00000321301 751 ntAPPRIS P1 TSL 1 (best) BASIC15.61■□□□□ 0.09
AP4E1Q9UPM8 ZNRD1-201ENST00000332435 864 ntAPPRIS P1 TSL 1 (best) BASIC15.61■□□□□ 0.09
AP4E1Q9UPM8 CPLX2-202ENST00000393745 826 ntAPPRIS P1 TSL 1 (best) BASIC15.61■□□□□ 0.09
AP4E1Q9UPM8 CYB5R3-203ENST00000402438 1050 ntTSL 5 BASIC15.61■□□□□ 0.09
AP4E1Q9UPM8 TPM1-207ENST00000403994 1049 ntAPPRIS ALT1 TSL 1 (best) BASIC15.61■□□□□ 0.09
AP4E1Q9UPM8 AL133456.1-201ENST00000415655 577 ntTSL 4 BASIC15.61■□□□□ 0.09
AP4E1Q9UPM8 COX5BP8-201ENST00000416911 349 ntBASIC15.61■□□□□ 0.09
AP4E1Q9UPM8 TMEM14DP-201ENST00000422205 345 ntBASIC15.61■□□□□ 0.09
AP4E1Q9UPM8 AL157832.1-201ENST00000428273 495 ntTSL 2 BASIC15.61■□□□□ 0.09
AP4E1Q9UPM8 UFL1-AS1-201ENST00000430796 548 ntTSL 3 BASIC15.61■□□□□ 0.09
AP4E1Q9UPM8 AC128709.1-201ENST00000445908 600 ntTSL 3 BASIC15.61■□□□□ 0.09
AP4E1Q9UPM8 FDPS-203ENST00000447866 1256 ntAPPRIS ALT1 TSL 5 BASIC15.61■□□□□ 0.09
AP4E1Q9UPM8 SNHG11-212ENST00000449351 954 ntTSL 5 BASIC15.61■□□□□ 0.09
AP4E1Q9UPM8 FO681548.1-201ENST00000455617 1132 ntBASIC15.61■□□□□ 0.09
AP4E1Q9UPM8 SEPT7P9-202ENST00000489259 743 ntTSL 3 BASIC15.61■□□□□ 0.09
AP4E1Q9UPM8 USP32P1-208ENST00000506594 1164 ntBASIC15.61■□□□□ 0.09
AP4E1Q9UPM8 LACTB2-203ENST00000522447 1034 ntAPPRIS P1 TSL 2 BASIC15.61■□□□□ 0.09
AP4E1Q9UPM8 CCKBR-202ENST00000525014 792 ntTSL 4 BASIC15.61■□□□□ 0.09
AP4E1Q9UPM8 ZSCAN30-208ENST00000592278 731 ntTSL 4 BASIC15.61■□□□□ 0.09
AP4E1Q9UPM8 AC008735.3-201ENST00000596646 500 ntBASIC15.61■□□□□ 0.09
AP4E1Q9UPM8 IGHV3-72-202ENST00000621503 303 ntBASIC15.61■□□□□ 0.09
AP4E1Q9UPM8 CPEB2-209ENST00000538197 6878 ntAPPRIS P4 TSL 5 BASIC15.61■□□□□ 0.09
AP4E1Q9UPM8 FBXO5-202ENST00000367241 2221 ntTSL 1 (best) BASIC15.61■□□□□ 0.09
AP4E1Q9UPM8 SLC35C2-204ENST00000372230 2246 ntAPPRIS P1 TSL 1 (best) BASIC15.61■□□□□ 0.09
AP4E1Q9UPM8 SGCZ-201ENST00000382080 2234 ntAPPRIS P1 TSL 5 BASIC15.61■□□□□ 0.09
AP4E1Q9UPM8 WDR97-201ENST00000323662 6916 ntAPPRIS P1 TSL 5 BASIC15.61■□□□□ 0.09
AP4E1Q9UPM8 PVR-202ENST00000344956 3166 ntAPPRIS ALT2 TSL 5 BASIC15.61■□□□□ 0.09
AP4E1Q9UPM8 AP001627.1-201ENST00000437426 1754 ntTSL 1 (best) BASIC15.61■□□□□ 0.09
AP4E1Q9UPM8 OR2I1P-210ENST00000642037 4691 ntBASIC15.61■□□□□ 0.09
AP4E1Q9UPM8 LIMS2-205ENST00000409455 2500 ntAPPRIS ALT1 TSL 1 (best) BASIC15.61■□□□□ 0.09
AP4E1Q9UPM8 EIF3K-203ENST00000545173 1327 ntAPPRIS ALT1 TSL 2 BASIC15.61■□□□□ 0.09
AP4E1Q9UPM8 C15orf52-206ENST00000559313 3022 ntAPPRIS P2 TSL 5 BASIC15.61■□□□□ 0.09
AP4E1Q9UPM8 RSPO1-202ENST00000401068 2320 ntAPPRIS P1 TSL 1 (best) BASIC15.61■□□□□ 0.09
AP4E1Q9UPM8 ADGRG2-207ENST00000379869 4768 ntAPPRIS ALT2 TSL 1 (best) BASIC15.61■□□□□ 0.09
AP4E1Q9UPM8 MYH11-211ENST00000576790 6272 ntTSL 1 (best) BASIC15.61■□□□□ 0.09
AP4E1Q9UPM8 RALGDS-201ENST00000372047 3598 ntAPPRIS ALT2 TSL 1 (best) BASIC15.61■□□□□ 0.09
AP4E1Q9UPM8 FDFT1-202ENST00000443614 1393 ntTSL 2 BASIC15.61■□□□□ 0.09
AP4E1Q9UPM8 FAM172A-204ENST00000505869 1387 ntTSL 2 BASIC15.61■□□□□ 0.09
AP4E1Q9UPM8 FAM114A2-215ENST00000522858 3379 ntAPPRIS P1 TSL 1 (best) BASIC15.61■□□□□ 0.09
AP4E1Q9UPM8 AL138709.1-201ENST00000614840 1693 ntBASIC15.6■□□□□ 0.09
AP4E1Q9UPM8 FOS-202ENST00000535987 1402 ntTSL 2 BASIC15.6■□□□□ 0.09
AP4E1Q9UPM8 TNFSF13-201ENST00000338784 1971 ntAPPRIS P3 TSL 1 (best) BASIC15.6■□□□□ 0.09
AP4E1Q9UPM8 ZNF587-203ENST00000423137 1974 ntAPPRIS ALT2 TSL 1 (best) BASIC15.6■□□□□ 0.09
AP4E1Q9UPM8 AL589740.1-203ENST00000433637 1984 ntTSL 2 BASIC15.6■□□□□ 0.09
AP4E1Q9UPM8 PIK3R1-211ENST00000521381 7011 ntAPPRIS P1 TSL 1 (best) BASIC15.6■□□□□ 0.09
AP4E1Q9UPM8 FAM160A2-203ENST00000524416 3327 ntTSL 2 BASIC15.6■□□□□ 0.09
AP4E1Q9UPM8 SYBU-208ENST00000440310 3072 ntAPPRIS ALT2 TSL 5 BASIC15.6■□□□□ 0.09
AP4E1Q9UPM8 CCDC116-201ENST00000292779 2260 ntAPPRIS P2 TSL 1 (best) BASIC15.6■□□□□ 0.09
AP4E1Q9UPM8 RNF145-212ENST00000611185 3624 ntAPPRIS P1 TSL 5 BASIC15.6■□□□□ 0.09
AP4E1Q9UPM8 ZC3H14-204ENST00000336693 2007 ntTSL 1 (best) BASIC15.6■□□□□ 0.09
AP4E1Q9UPM8 CYP4F3-203ENST00000586182 2338 ntAPPRIS ALT1 TSL 2 BASIC15.6■□□□□ 0.09
AP4E1Q9UPM8 RGS9-202ENST00000443584 2078 ntTSL 1 (best) BASIC15.6■□□□□ 0.09
AP4E1Q9UPM8 CPD-201ENST00000225719 9394 ntAPPRIS P1 TSL 1 (best) BASIC15.6■□□□□ 0.09
AP4E1Q9UPM8 SAFB-202ENST00000454510 2650 ntAPPRIS ALT2 TSL 2 BASIC15.6■□□□□ 0.09
AP4E1Q9UPM8 GABARAPL2-201ENST00000037243 1002 ntAPPRIS P1 TSL 1 (best) BASIC15.6■□□□□ 0.09
AP4E1Q9UPM8 NGDN-202ENST00000408901 1143 ntAPPRIS ALT2 TSL 1 (best) BASIC15.6■□□□□ 0.09
AP4E1Q9UPM8 AL513303.2-201ENST00000413339 536 ntTSL 2 BASIC15.6■□□□□ 0.09
AP4E1Q9UPM8 AC084864.1-201ENST00000496217 305 ntTSL 3 BASIC15.6■□□□□ 0.09
AP4E1Q9UPM8 FUZ-207ENST00000526575 482 ntTSL 4 BASIC15.6■□□□□ 0.09
AP4E1Q9UPM8 AC005865.1-202ENST00000543036 641 ntTSL 2 BASIC15.6■□□□□ 0.09
AP4E1Q9UPM8 LINC01595-201ENST00000555406 639 ntTSL 3 BASIC15.6■□□□□ 0.09
AP4E1Q9UPM8 SPATA8-AS1-201ENST00000558722 465 ntTSL 3 BASIC15.6■□□□□ 0.09
AP4E1Q9UPM8 HIRIP3-204ENST00000564026 988 ntTSL 2 BASIC15.6■□□□□ 0.09
Retrieved 100 of 98,524 protein–RNA pairs in 168.8 ms